Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46840 * 2 1 4 4 C 1.50706 * 109.82445 * 59.29704 * 3 2 1 5 5 C 1.38234 * 120.00196 * 270.89020 * 4 3 2 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 3 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99618 * 359.97438 * 8 7 6 10 10 C 1.54378 * 109.83080 * 180.18565 * 3 2 1 11 11 C 1.55305 * 102.25547 * 98.24852 * 10 3 2 12 12 C 1.54947 * 100.94050 * 34.13173 * 11 10 3 13 13 C 1.53005 * 110.30925 * 82.47208 * 12 11 10 14 14 C 1.50699 * 110.30944 * 204.54108 * 12 11 10 15 15 H 1.07990 * 120.00058 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99714 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00440 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99676 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47177 * 60.00678 * 18 16 14 20 20 H 1.48502 * 109.47121 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47170 * 300.00304 * 18 16 14 22 22 O 1.43233 * 109.90774 * 298.36684 * 3 2 1 23 23 H 1.09004 * 109.46871 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47357 * 299.99620 * 1 2 3 25 25 H 1.08995 * 109.47083 * 60.00133 * 1 2 3 26 26 H 1.09001 * 109.47357 * 240.00380 * 2 1 3 27 27 H 1.09003 * 109.47387 * 119.99849 * 2 1 3 28 28 H 1.08000 * 119.99516 * 0.24808 * 5 4 3 29 29 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00350 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.99804 * 179.97438 * 9 8 7 33 33 H 1.09005 * 110.84500 * 216.43862 * 10 3 2 34 34 H 1.08996 * 110.85152 * 339.84979 * 10 3 2 35 35 H 1.09000 * 111.12933 * 152.04931 * 11 10 3 36 36 H 1.08997 * 111.12488 * 276.21846 * 11 10 3 37 37 H 1.08998 * 109.46709 * 60.00050 * 13 12 11 38 38 H 1.08997 * 109.47124 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.46924 * 300.00110 * 13 12 11 40 40 H 0.96995 * 120.00295 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5278 2.1657 1.2190 5 6 0.3137 2.8249 1.1724 6 6 -0.1563 3.4878 2.2907 7 6 0.5876 3.4909 3.4558 8 6 1.8012 2.8307 3.5028 9 6 2.2707 2.1670 2.3848 10 6 3.5837 1.4523 -0.0047 11 6 3.9074 1.6737 -1.5074 12 6 2.7321 2.5911 -1.9293 13 6 3.0356 4.0454 -1.5631 14 6 2.4775 2.4677 -3.4095 15 1 3.0839 1.8044 -4.0082 16 6 1.4696 3.2009 -3.9991 17 7 0.7307 4.0083 -3.2699 18 14 1.1535 3.0473 -5.8338 19 1 0.8116 1.6397 -6.1610 20 1 0.0251 3.9332 -6.2175 21 1 2.3727 3.4473 -6.5813 22 8 1.5992 2.1156 -1.1850 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 -0.2697 2.8184 0.2635 29 1 -1.1047 4.0032 2.2541 30 1 0.2206 4.0091 4.3294 31 1 2.3826 2.8335 4.4130 32 1 3.2191 1.6516 2.4214 33 1 3.9682 2.2736 0.6001 34 1 3.9787 0.4982 0.3439 35 1 4.8649 2.1793 -1.6327 36 1 3.8874 0.7323 -2.0564 37 1 3.9411 4.3680 -2.0770 38 1 2.2009 4.6779 -1.8651 39 1 3.1809 4.1260 -0.4858 40 1 0.0219 4.5244 -3.6847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383286220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -42.528944 kcal Electronic energy + Delta-G solvation = -20703.600381 eV Core-core repulsion = 17868.245949 eV Total energy + Delta-G solvation = -2835.354432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22276 -39.14545 -35.71266 -33.92185 -32.95707 -31.73379 -31.32452 -30.20008 -27.39607 -26.46514 -23.74266 -23.52248 -22.95275 -21.14457 -20.38516 -18.43777 -17.81859 -16.73802 -16.31083 -16.21767 -15.73947 -15.45254 -15.15127 -14.63797 -14.39309 -14.20149 -13.89994 -13.83705 -13.34639 -13.22796 -12.96240 -12.80031 -12.61087 -12.49510 -12.37862 -12.31451 -12.10700 -11.92928 -11.85884 -11.67713 -11.23518 -11.02782 -10.82459 -10.51706 -9.73525 -9.64675 -9.45397 -8.00347 -6.23526 0.58574 0.64505 1.41726 1.42833 1.49779 2.44086 3.01229 3.09573 3.58719 3.83473 4.02416 4.07448 4.21948 4.27750 4.36194 4.39924 4.53520 4.57479 4.63355 4.77881 4.82473 4.89750 4.96409 4.98474 5.03144 5.04979 5.15156 5.17666 5.23607 5.29560 5.30739 5.45226 5.48328 5.54401 5.68067 5.70775 5.77800 5.94458 6.18674 6.26149 6.39801 6.72166 7.23743 7.51660 8.99127 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.007180 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.436585 B = 3898.579420 C = 4065.837420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.126 3.874 4 C -0.084 4.084 5 C -0.109 4.109 6 C -0.137 4.137 7 C -0.129 4.129 8 C -0.125 4.125 9 C -0.126 4.126 10 C -0.134 4.134 11 C -0.139 4.139 12 C 0.221 3.779 13 C -0.135 4.135 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.035 3.965 17 N -0.886 5.886 18 Si 0.946 3.054 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.269 1.269 22 O -0.364 6.364 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -4.433 12.533 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.086 3.914 4 C -0.085 4.085 5 C -0.128 4.128 6 C -0.155 4.155 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.171 4.171 11 C -0.177 4.177 12 C 0.183 3.817 13 C -0.193 4.193 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.167 4.167 17 N -0.523 5.523 18 Si 0.772 3.228 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.194 1.194 22 O -0.284 6.284 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.140 -4.272 12.461 13.346 hybrid contribution -0.345 0.253 -1.439 1.502 sum 1.795 -4.018 11.022 11.868 Atomic orbital electron populations 1.21626 0.96016 1.01019 1.00901 1.21715 0.96591 0.94602 1.01816 1.20962 0.93200 0.91862 0.85407 1.20283 0.94858 0.97920 0.95403 1.20988 0.96487 0.97499 0.97777 1.21342 1.00829 0.99881 0.93436 1.21397 0.95256 0.99991 0.98002 1.21419 0.96519 0.97545 0.98763 1.21251 1.00142 1.00632 0.92409 1.23175 0.94378 1.02895 0.96696 1.23205 0.99293 0.99897 0.95279 1.19872 0.82293 0.89666 0.89824 1.21949 1.00281 1.00601 0.96476 1.21351 1.17904 1.25856 0.92964 0.92664 1.25698 0.95338 0.94268 1.01445 1.70088 1.19680 1.26171 1.36347 0.85825 0.77780 0.77901 0.81303 1.20081 1.21122 1.19367 1.88759 1.32990 1.73552 1.33058 0.91773 0.92946 0.95035 0.92529 0.89718 0.88866 0.85554 0.83652 0.83238 0.84503 0.90789 0.88640 0.91080 0.92143 0.94754 0.92187 0.96127 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.14 71.98 0.66 -4.17 16 2 C -0.11 -3.76 5.06 30.59 0.15 -3.61 16 3 C 0.13 4.87 0.77 -11.07 -0.01 4.86 16 4 C -0.08 -3.04 4.26 -19.86 -0.08 -3.12 16 5 C -0.11 -4.20 7.51 22.27 0.17 -4.03 16 6 C -0.14 -4.30 10.05 22.27 0.22 -4.08 16 7 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 8 C -0.12 -3.09 10.05 22.27 0.22 -2.86 16 9 C -0.13 -3.66 8.75 22.27 0.19 -3.47 16 10 C -0.13 -4.57 4.66 31.85 0.15 -4.42 16 11 C -0.14 -5.65 6.01 32.05 0.19 -5.46 16 12 C 0.22 11.06 0.73 -10.87 -0.01 11.06 16 13 C -0.14 -6.80 8.62 71.98 0.62 -6.17 16 14 C -0.54 -30.24 8.30 25.60 0.21 -30.02 16 15 H 0.06 3.02 7.76 -2.92 -0.02 3.00 16 16 C 0.03 1.96 5.28 84.66 0.45 2.41 16 17 N -0.89 -51.93 10.97 21.45 0.24 -51.70 16 18 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 O -0.36 -18.24 8.22 -148.98 -1.22 -19.46 16 23 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.05 1.79 6.16 -2.39 -0.01 1.77 16 25 H 0.03 1.30 7.75 -2.39 -0.02 1.29 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.09 4.24 7.48 -2.91 -0.02 4.22 16 29 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.14 3.33 6.82 -2.91 -0.02 3.31 16 33 H 0.07 2.43 6.54 -2.38 -0.02 2.41 16 34 H 0.10 2.62 7.82 -2.39 -0.02 2.60 16 35 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 36 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 37 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 3.40 5.93 -2.39 -0.01 3.39 16 39 H 0.02 0.94 7.53 -2.39 -0.02 0.92 16 40 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -64.00 314.17 5.40 -58.60 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 1.00 Total: 22.53 kcal Atomic # 6 Polarization: -59.55 SS G_CDS: 3.37 Total: -56.18 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.24 Total: -51.70 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -1.22 Total: -19.46 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.00 5.40 -58.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383286220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.066 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds