Wall clock time and date at job start Mon Mar 30 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 C 1.50694 * 109.82405 * 305.88773 * 3 2 1 5 5 C 1.38241 * 120.00165 * 268.83723 * 4 3 2 6 6 C 1.38228 * 119.99910 * 179.74546 * 5 4 3 7 7 C 1.38231 * 120.00311 * 0.55217 * 6 5 4 8 8 C 1.38234 * 119.99787 * 359.70704 * 7 6 5 9 9 C 1.38235 * 120.00348 * 0.02562 * 8 7 6 10 10 C 1.54383 * 109.82555 * 184.99937 * 3 2 1 11 11 C 1.55300 * 102.25217 * 261.84229 * 10 3 2 12 12 C 1.54947 * 100.94671 * 325.86868 * 11 10 3 13 13 C 1.52993 * 110.30862 * 277.43054 * 12 11 10 14 14 C 1.50696 * 110.30803 * 155.35499 * 12 11 10 15 15 H 1.07999 * 120.00319 * 1.39810 * 14 12 11 16 16 C 1.37885 * 119.99717 * 181.39193 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.43371 * 109.88743 * 66.80660 * 3 2 1 23 23 H 1.09001 * 109.46723 * 299.99983 * 1 2 3 24 24 H 1.08995 * 109.47119 * 59.99538 * 1 2 3 25 25 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46723 * 240.00016 * 2 1 3 27 27 H 1.08995 * 109.47119 * 120.00462 * 2 1 3 28 28 H 1.08004 * 119.99626 * 0.02562 * 5 4 3 29 29 H 1.08007 * 120.00047 * 180.27788 * 6 5 4 30 30 H 1.07997 * 120.00157 * 179.72448 * 7 6 5 31 31 H 1.08002 * 120.00043 * 179.97438 * 8 7 6 32 32 H 1.07993 * 120.00454 * 179.97438 * 9 8 7 33 33 H 1.09007 * 110.84191 * 143.65571 * 10 3 2 34 34 H 1.09000 * 111.02604 * 20.11596 * 10 3 2 35 35 H 1.09008 * 111.12525 * 207.95169 * 11 10 3 36 36 H 1.09002 * 111.12476 * 83.79465 * 11 10 3 37 37 H 1.08996 * 109.47594 * 298.60448 * 13 12 11 38 38 H 1.09007 * 109.47200 * 58.61086 * 13 12 11 39 39 H 1.09007 * 109.46968 * 178.60492 * 13 12 11 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4269 2.2013 -1.1485 5 6 2.0721 2.2461 -2.3703 6 6 1.5070 2.9378 -3.4253 7 6 0.3024 3.5942 -3.2554 8 6 -0.3401 3.5539 -2.0322 9 6 0.2221 2.8577 -0.9786 10 6 3.5786 1.4539 -0.1266 11 6 4.0294 1.6280 1.3493 12 6 2.8958 2.5302 1.8988 13 6 3.1705 3.9958 1.5565 14 6 2.7665 2.3575 3.3902 15 1 3.4348 1.6924 3.9169 16 6 1.7948 3.0489 4.0825 17 7 1.6822 2.8986 5.3842 18 14 0.6386 4.1988 3.1715 19 1 1.2271 5.5616 3.1297 20 1 0.4379 3.7035 1.7860 21 1 -0.6686 4.2455 3.8747 22 8 1.7020 2.0793 1.2392 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.0154 1.7369 -2.5018 29 1 2.0089 2.9690 -4.3812 30 1 -0.1368 4.1383 -4.0785 31 1 -1.2811 4.0671 -1.8993 32 1 -0.2796 2.8265 -0.0228 33 1 3.9114 2.2945 -0.7356 34 1 3.9444 0.5121 -0.5354 35 1 4.9950 2.1305 1.4086 36 1 4.0551 0.6696 1.8679 37 1 4.1043 4.3091 2.0232 38 1 3.2492 4.1078 0.4750 39 1 2.3534 4.6148 1.9273 40 1 0.9989 3.3853 5.8712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383286223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:14 Heat of formation + Delta-G solvation = -36.617184 kcal Electronic energy + Delta-G solvation = -20876.027788 eV Core-core repulsion = 18040.929709 eV Total energy + Delta-G solvation = -2835.098079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41025 -39.28901 -35.78821 -34.17783 -33.16501 -31.89836 -31.34930 -30.77370 -27.40604 -26.58284 -23.84524 -23.55175 -23.03062 -21.17327 -20.57036 -18.66996 -18.03648 -17.08283 -16.40913 -16.28019 -15.72791 -15.52818 -15.14572 -14.77411 -14.62825 -14.41611 -14.26598 -14.10720 -13.66099 -13.37619 -13.24309 -12.88098 -12.65378 -12.60665 -12.44788 -12.31565 -11.98929 -11.85149 -11.77370 -11.61820 -11.33708 -11.12875 -10.79707 -10.71582 -9.94197 -9.70019 -9.49432 -8.34275 -6.43588 0.54597 0.60087 1.30131 1.37831 1.64110 2.38853 2.89874 2.98260 3.40122 3.75103 3.94353 4.00287 4.18604 4.25574 4.29905 4.36297 4.41584 4.46373 4.51410 4.66147 4.71096 4.73719 4.82100 4.88479 4.90950 4.98678 5.07452 5.10043 5.14165 5.18514 5.25434 5.28069 5.42632 5.44803 5.56985 5.67017 5.68749 5.73789 5.86076 6.21790 6.26689 6.57220 6.86724 7.33534 8.80202 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.008857 C = 0.008011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.393041 B = 3160.576609 C = 3494.184570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.127 3.873 4 C -0.085 4.085 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.127 4.127 8 C -0.137 4.137 9 C -0.118 4.118 10 C -0.133 4.133 11 C -0.128 4.128 12 C 0.191 3.809 13 C -0.151 4.151 14 C -0.511 4.511 15 H 0.041 0.959 16 C 0.032 3.968 17 N -0.943 5.943 18 Si 0.933 3.067 19 H -0.284 1.284 20 H -0.203 1.203 21 H -0.315 1.315 22 O -0.377 6.377 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 -1.328 -20.404 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C 0.088 3.912 4 C -0.086 4.086 5 C -0.139 4.139 6 C -0.140 4.140 7 C -0.145 4.145 8 C -0.155 4.155 9 C -0.137 4.137 10 C -0.170 4.170 11 C -0.166 4.166 12 C 0.153 3.847 13 C -0.208 4.208 14 C -0.549 4.549 15 H 0.059 0.941 16 C -0.167 4.167 17 N -0.583 5.583 18 Si 0.762 3.238 19 H -0.212 1.212 20 H -0.126 1.126 21 H -0.244 1.244 22 O -0.297 6.297 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.122 -1.275 -20.195 20.235 hybrid contribution -0.605 0.594 0.970 1.288 sum -0.727 -0.681 -19.225 19.251 Atomic orbital electron populations 1.21701 0.95952 1.01285 1.01048 1.21740 0.96620 0.94516 1.02112 1.21031 0.94025 0.91981 0.84195 1.20184 0.95150 0.97985 0.95243 1.21257 1.00474 1.00168 0.92012 1.21430 0.95908 0.97256 0.99411 1.21413 0.95933 0.99889 0.97240 1.21355 1.00758 0.99735 0.93614 1.21111 0.96207 0.97783 0.98568 1.23219 0.93383 1.03815 0.96595 1.23036 0.98747 0.99614 0.95168 1.20186 0.83279 0.90978 0.90255 1.22306 1.00565 0.97822 1.00105 1.21230 1.16668 1.25918 0.91056 0.94106 1.25782 0.98116 0.97852 0.94973 1.70052 1.35333 1.44007 1.08901 0.86229 0.76657 0.78377 0.82531 1.21198 1.12564 1.24431 1.88784 1.32469 1.75990 1.32477 0.94908 0.92417 0.91909 0.89276 0.92709 0.84144 0.83290 0.83792 0.85420 0.88346 0.89630 0.88225 0.90164 0.92368 0.91939 0.92331 0.95316 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.01 71.98 0.65 -3.82 16 2 C -0.11 -3.49 5.12 30.60 0.16 -3.33 16 3 C 0.13 4.33 0.78 -11.07 -0.01 4.32 16 4 C -0.09 -2.63 4.10 -19.87 -0.08 -2.71 16 5 C -0.12 -2.93 8.75 22.27 0.19 -2.73 16 6 C -0.12 -2.52 10.05 22.27 0.22 -2.29 16 7 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 8 C -0.14 -3.65 10.05 22.27 0.22 -3.43 16 9 C -0.12 -3.91 7.47 22.27 0.17 -3.74 16 10 C -0.13 -3.89 4.65 31.85 0.15 -3.74 16 11 C -0.13 -4.77 6.01 32.05 0.19 -4.58 16 12 C 0.19 8.75 0.67 -10.88 -0.01 8.74 16 13 C -0.15 -6.44 8.33 71.98 0.60 -5.84 16 14 C -0.51 -29.48 8.90 25.60 0.23 -29.25 16 15 H 0.04 2.58 8.01 -2.91 -0.02 2.56 16 16 C 0.03 1.90 5.45 84.66 0.46 2.36 16 17 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 18 Si 0.93 47.83 23.95 68.60 1.64 49.47 16 19 H -0.28 -14.15 6.88 99.48 0.68 -13.47 16 20 H -0.20 -9.80 4.43 99.48 0.44 -9.36 16 21 H -0.32 -16.49 7.11 99.48 0.71 -15.78 16 22 O -0.38 -16.75 5.94 -148.98 -0.88 -17.63 16 23 H 0.03 1.21 7.90 -2.39 -0.02 1.19 16 24 H 0.06 1.72 6.14 -2.39 -0.01 1.70 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.14 2.74 6.80 -2.91 -0.02 2.72 16 29 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.10 3.79 6.50 -2.91 -0.02 3.77 16 33 H 0.09 2.26 6.50 -2.38 -0.02 2.25 16 34 H 0.10 2.32 7.79 -2.39 -0.02 2.30 16 35 H 0.08 2.73 8.03 -2.38 -0.02 2.71 16 36 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 37 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.06 2.17 7.50 -2.38 -0.02 2.15 16 39 H 0.03 1.31 3.26 -2.38 -0.01 1.30 16 40 H 0.26 16.06 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -69.14 303.10 5.15 -64.00 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.72 Total: 17.02 kcal Atomic # 6 Polarization: -55.92 SS G_CDS: 3.37 Total: -52.55 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.88 Total: -17.63 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.64 Total: 49.47 kcal Total: -69.14 5.15 -64.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383286223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.380 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds