Wall clock time and date at job start Mon Mar 30 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47551 * 2 1 4 4 C 1.50700 * 109.82215 * 305.88647 * 3 2 1 5 5 C 1.38234 * 119.99589 * 118.70811 * 4 3 2 6 6 C 1.38235 * 119.99672 * 179.78539 * 5 4 3 7 7 C 1.38233 * 120.00108 * 0.46548 * 6 5 4 8 8 C 1.38241 * 119.99869 * 359.76932 * 7 6 5 9 9 C 1.38233 * 119.99941 * 298.98349 * 4 3 2 10 10 C 1.54376 * 109.83151 * 184.99918 * 3 2 1 11 11 C 1.55307 * 102.25396 * 219.13355 * 10 3 2 12 12 C 1.54941 * 100.94302 * 34.13242 * 11 10 3 13 13 C 1.53002 * 110.31068 * 82.47139 * 12 11 10 14 14 C 1.50696 * 110.31208 * 204.54559 * 12 11 10 15 15 H 1.08004 * 119.99834 * 358.60859 * 14 12 11 16 16 C 1.37876 * 120.00415 * 178.61046 * 14 12 11 17 17 N 1.31512 * 120.00301 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 119.99584 * 359.97438 * 16 14 12 19 19 H 1.48500 * 109.47273 * 90.00050 * 18 16 14 20 20 H 1.48506 * 109.46958 * 209.99890 * 18 16 14 21 21 H 1.48502 * 109.47397 * 329.99496 * 18 16 14 22 22 O 1.43471 * 109.81596 * 66.83199 * 3 2 1 23 23 H 1.09000 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47187 * 299.99940 * 1 2 3 25 25 H 1.09006 * 109.47085 * 59.99570 * 1 2 3 26 26 H 1.08999 * 109.47187 * 240.00060 * 2 1 3 27 27 H 1.09006 * 109.47085 * 120.00429 * 2 1 3 28 28 H 1.08000 * 120.00378 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.99809 * 180.25500 * 6 5 4 30 30 H 1.07999 * 120.00354 * 179.78607 * 7 6 5 31 31 H 1.07998 * 119.99968 * 179.97438 * 8 7 6 32 32 H 1.07995 * 120.00094 * 359.97438 * 9 4 3 33 33 H 1.09000 * 110.84988 * 100.93975 * 10 3 2 34 34 H 1.09003 * 110.85054 * 337.32506 * 10 3 2 35 35 H 1.09005 * 111.12142 * 276.21435 * 11 10 3 36 36 H 1.08993 * 111.12620 * 152.05421 * 11 10 3 37 37 H 1.08996 * 109.47250 * 181.38875 * 13 12 11 38 38 H 1.08997 * 109.46451 * 61.38824 * 13 12 11 39 39 H 1.09003 * 109.46859 * 301.39388 * 13 12 11 40 40 H 0.97005 * 120.00083 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4270 2.2013 -1.1486 5 6 0.6319 3.3049 -0.9018 6 6 0.0731 4.0037 -1.9556 7 6 0.3015 3.5931 -3.2556 8 6 1.0927 2.4866 -3.5022 9 6 1.6550 1.7905 -2.4486 10 6 3.5786 1.4539 -0.1265 11 6 3.9799 2.6052 0.8354 12 6 2.8995 2.4588 1.9363 13 6 3.3023 1.3714 2.9344 14 6 2.6964 3.7715 2.6479 15 1 3.2884 4.6320 2.3730 16 6 1.7551 3.8741 3.6501 17 7 1.5782 5.0196 4.2714 18 14 0.7308 2.3859 4.1252 19 1 1.4260 1.6280 5.1964 20 1 -0.5961 2.8352 4.6180 21 1 0.5480 1.5115 2.9389 22 8 1.7016 2.0781 1.2409 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4498 3.6230 0.1141 29 1 -0.5447 4.8683 -1.7630 30 1 -0.1378 4.1370 -4.0788 31 1 1.2708 2.1656 -4.5178 32 1 2.2729 0.9259 -2.6412 33 1 3.8821 1.6791 -1.1489 34 1 4.0022 0.5059 0.2051 35 1 3.9078 3.5738 0.3405 36 1 4.9788 2.4474 1.2419 37 1 2.5223 1.2628 3.6879 38 1 4.2383 1.6509 3.4181 39 1 3.4335 0.4258 2.4083 40 1 0.9156 5.0919 4.9762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383286227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:16 Heat of formation + Delta-G solvation = -20.936599 kcal Electronic energy + Delta-G solvation = -20847.009945 eV Core-core repulsion = 18012.591828 eV Total energy + Delta-G solvation = -2834.418118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97622 -37.93450 -34.21079 -32.23778 -31.51648 -30.45652 -30.31466 -29.16135 -25.79934 -24.78499 -22.58292 -21.97859 -21.85453 -19.64114 -19.05502 -16.87167 -16.55978 -15.44394 -15.01850 -14.69391 -14.42724 -14.01936 -13.61941 -13.31755 -13.02213 -12.75415 -12.66552 -12.41722 -12.35840 -12.10803 -11.86069 -11.48030 -11.34323 -10.94232 -10.85326 -10.66905 -10.51906 -10.27824 -10.17391 -10.01845 -9.93213 -9.50648 -8.97266 -8.55581 -8.51306 -8.30805 -8.18062 -6.10084 -4.17748 1.73646 1.82877 3.36239 3.46902 3.67919 4.17939 4.51578 4.66147 5.07728 5.17574 5.26425 5.33912 5.37270 5.38989 5.53132 5.61058 5.74811 5.80666 5.85865 6.01659 6.07612 6.13402 6.22232 6.25169 6.27890 6.35141 6.39851 6.46229 6.51215 6.57412 6.62432 6.69806 6.76053 6.83161 6.84425 7.00786 7.15053 7.31021 7.44311 7.69067 8.35524 8.47026 8.91816 9.54572 11.00527 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.008607 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.203683 B = 3252.486320 C = 3502.422059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.138 3.862 4 C -0.066 4.066 5 C -0.087 4.087 6 C -0.125 4.125 7 C -0.133 4.133 8 C -0.131 4.131 9 C -0.122 4.122 10 C -0.144 4.144 11 C -0.127 4.127 12 C 0.196 3.804 13 C -0.156 4.156 14 C -0.511 4.511 15 H 0.078 0.922 16 C 0.085 3.915 17 N -0.893 5.893 18 Si 0.876 3.124 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.221 1.221 22 O -0.353 6.353 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.033 0.967 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -8.329 -12.081 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.097 3.903 4 C -0.066 4.066 5 C -0.105 4.105 6 C -0.143 4.143 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.140 4.140 10 C -0.182 4.182 11 C -0.165 4.165 12 C 0.158 3.842 13 C -0.213 4.213 14 C -0.548 4.548 15 H 0.096 0.904 16 C -0.119 4.119 17 N -0.530 5.530 18 Si 0.706 3.294 19 H -0.217 1.217 20 H -0.232 1.232 21 H -0.144 1.144 22 O -0.274 6.274 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.393 -8.201 -11.882 14.443 hybrid contribution -0.360 -0.634 0.320 0.796 sum -0.753 -8.836 -11.562 14.571 Atomic orbital electron populations 1.21713 0.95700 1.00367 1.02630 1.21825 0.96794 0.95533 1.01260 1.20752 0.92686 0.90927 0.85934 1.20115 0.96934 0.95796 0.93765 1.21333 0.94843 0.93967 1.00387 1.21200 1.00427 0.99941 0.92765 1.21035 0.99864 0.97551 0.96641 1.20947 0.99065 0.96575 0.98293 1.20862 1.00838 1.00070 0.92210 1.23185 0.94732 0.99811 1.00424 1.23084 0.99500 0.97514 0.96382 1.20304 0.81689 0.93233 0.88954 1.22417 1.01114 0.97891 0.99896 1.20874 1.22174 0.94944 1.16767 0.90392 1.25027 0.95831 0.95990 0.95081 1.69916 1.34128 1.25016 1.23912 0.87095 0.78401 0.84058 0.79819 1.21713 1.23198 1.14446 1.88905 1.32545 1.77009 1.28898 0.93831 0.91785 0.92895 0.92209 0.91652 0.84164 0.86512 0.86939 0.86877 0.86783 0.91300 0.91305 0.91116 0.91577 0.93520 0.92276 0.94846 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.50 37.16 0.35 -1.97 16 2 C -0.12 -1.84 4.86 -26.73 -0.13 -1.97 16 3 C 0.14 2.47 0.76 -91.05 -0.07 2.40 16 4 C -0.07 -1.14 3.25 -104.63 -0.34 -1.48 16 5 C -0.09 -1.62 9.39 -39.58 -0.37 -1.99 16 6 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 7 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 8 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 9 C -0.12 -1.79 8.40 -39.58 -0.33 -2.12 16 10 C -0.14 -2.38 5.60 -24.79 -0.14 -2.52 16 11 C -0.13 -2.48 6.01 -24.48 -0.15 -2.63 16 12 C 0.20 4.45 0.67 -90.75 -0.06 4.39 16 13 C -0.16 -3.32 8.33 37.16 0.31 -3.01 16 14 C -0.51 -14.06 8.90 -34.44 -0.31 -14.36 16 15 H 0.08 2.33 8.01 -52.48 -0.42 1.91 16 16 C 0.08 2.43 5.45 -17.82 -0.10 2.33 16 17 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 18 Si 0.88 22.09 23.95 -169.99 -4.07 18.02 16 19 H -0.29 -7.19 6.88 56.52 0.39 -6.80 16 20 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 21 H -0.22 -5.34 5.43 56.52 0.31 -5.03 16 22 O -0.35 -7.81 5.39 -35.23 -0.19 -8.00 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.16 7.89 -51.93 -0.41 0.75 16 25 H 0.05 0.83 7.05 -51.93 -0.37 0.47 16 26 H 0.06 0.80 7.69 -51.93 -0.40 0.41 16 27 H 0.06 1.05 7.98 -51.93 -0.41 0.64 16 28 H 0.14 3.00 7.03 -52.49 -0.37 2.63 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.11 1.46 7.65 -52.49 -0.40 1.06 16 33 H 0.07 1.03 7.10 -51.93 -0.37 0.66 16 34 H 0.07 1.03 7.50 -51.93 -0.39 0.64 16 35 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.07 1.19 8.03 -51.93 -0.42 0.77 16 37 H 0.05 1.06 3.26 -51.93 -0.17 0.89 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.03 0.61 7.33 -51.93 -0.38 0.23 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -29.84 307.32 -7.66 -37.50 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.28 Total: 3.95 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -2.52 Total: -29.75 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.19 Total: -8.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.07 Total: 18.02 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.84 -7.66 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383286227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.565 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds