Wall clock time and date at job start Mon Mar 30 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47551 * 2 1 4 4 C 1.50700 * 109.82215 * 305.88647 * 3 2 1 5 5 C 1.38234 * 119.99589 * 118.70811 * 4 3 2 6 6 C 1.38235 * 119.99672 * 179.78539 * 5 4 3 7 7 C 1.38233 * 120.00108 * 0.46548 * 6 5 4 8 8 C 1.38241 * 119.99869 * 359.76932 * 7 6 5 9 9 C 1.38233 * 119.99941 * 298.98349 * 4 3 2 10 10 C 1.54376 * 109.83151 * 184.99918 * 3 2 1 11 11 C 1.55307 * 102.25396 * 219.13355 * 10 3 2 12 12 C 1.54941 * 100.94302 * 34.13242 * 11 10 3 13 13 C 1.53002 * 110.31068 * 82.47139 * 12 11 10 14 14 C 1.50696 * 110.31208 * 204.54559 * 12 11 10 15 15 H 1.08004 * 119.99834 * 358.60859 * 14 12 11 16 16 C 1.37876 * 120.00415 * 178.61046 * 14 12 11 17 17 N 1.31512 * 120.00301 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 119.99584 * 359.97438 * 16 14 12 19 19 H 1.48500 * 109.47273 * 90.00050 * 18 16 14 20 20 H 1.48506 * 109.46958 * 209.99890 * 18 16 14 21 21 H 1.48502 * 109.47397 * 329.99496 * 18 16 14 22 22 O 1.43471 * 109.81596 * 66.83199 * 3 2 1 23 23 H 1.09000 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47187 * 299.99940 * 1 2 3 25 25 H 1.09006 * 109.47085 * 59.99570 * 1 2 3 26 26 H 1.08999 * 109.47187 * 240.00060 * 2 1 3 27 27 H 1.09006 * 109.47085 * 120.00429 * 2 1 3 28 28 H 1.08000 * 120.00378 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.99809 * 180.25500 * 6 5 4 30 30 H 1.07999 * 120.00354 * 179.78607 * 7 6 5 31 31 H 1.07998 * 119.99968 * 179.97438 * 8 7 6 32 32 H 1.07995 * 120.00094 * 359.97438 * 9 4 3 33 33 H 1.09000 * 110.84988 * 100.93975 * 10 3 2 34 34 H 1.09003 * 110.85054 * 337.32506 * 10 3 2 35 35 H 1.09005 * 111.12142 * 276.21435 * 11 10 3 36 36 H 1.08993 * 111.12620 * 152.05421 * 11 10 3 37 37 H 1.08996 * 109.47250 * 181.38875 * 13 12 11 38 38 H 1.08997 * 109.46451 * 61.38824 * 13 12 11 39 39 H 1.09003 * 109.46859 * 301.39388 * 13 12 11 40 40 H 0.97005 * 120.00083 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4270 2.2013 -1.1486 5 6 0.6319 3.3049 -0.9018 6 6 0.0731 4.0037 -1.9556 7 6 0.3015 3.5931 -3.2556 8 6 1.0927 2.4866 -3.5022 9 6 1.6550 1.7905 -2.4486 10 6 3.5786 1.4539 -0.1265 11 6 3.9799 2.6052 0.8354 12 6 2.8995 2.4588 1.9363 13 6 3.3023 1.3714 2.9344 14 6 2.6964 3.7715 2.6479 15 1 3.2884 4.6320 2.3730 16 6 1.7551 3.8741 3.6501 17 7 1.5782 5.0196 4.2714 18 14 0.7308 2.3859 4.1252 19 1 1.4260 1.6280 5.1964 20 1 -0.5961 2.8352 4.6180 21 1 0.5480 1.5115 2.9389 22 8 1.7016 2.0781 1.2409 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4498 3.6230 0.1141 29 1 -0.5447 4.8683 -1.7630 30 1 -0.1378 4.1370 -4.0788 31 1 1.2708 2.1656 -4.5178 32 1 2.2729 0.9259 -2.6412 33 1 3.8821 1.6791 -1.1489 34 1 4.0022 0.5059 0.2051 35 1 3.9078 3.5738 0.3405 36 1 4.9788 2.4474 1.2419 37 1 2.5223 1.2628 3.6879 38 1 4.2383 1.6509 3.4181 39 1 3.4335 0.4258 2.4083 40 1 0.9156 5.0919 4.9762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383286227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:16 Heat of formation + Delta-G solvation = -37.810207 kcal Electronic energy + Delta-G solvation = -20847.741640 eV Core-core repulsion = 18012.591828 eV Total energy + Delta-G solvation = -2835.149812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37886 -39.27814 -35.76815 -34.18069 -33.09524 -31.76381 -31.54488 -30.63989 -27.47412 -26.58745 -23.79984 -23.34648 -23.13244 -21.23641 -20.51526 -18.65559 -18.13537 -17.00450 -16.51739 -16.24839 -15.70740 -15.29973 -15.09926 -14.87835 -14.62248 -14.31461 -14.11752 -13.98146 -13.88021 -13.55130 -13.23705 -13.03931 -12.65753 -12.53538 -12.27183 -12.17837 -11.99865 -11.88891 -11.69719 -11.66975 -11.45687 -11.13421 -10.78952 -10.70942 -9.95703 -9.69963 -9.43423 -8.33826 -6.43398 0.56547 0.63033 1.30180 1.39248 1.64991 2.39296 2.89590 3.01215 3.42406 3.80650 3.92564 3.96798 4.18967 4.26148 4.31864 4.38944 4.40550 4.45911 4.50770 4.68773 4.74643 4.76141 4.77791 4.85420 4.95101 5.03788 5.07031 5.13957 5.15493 5.19864 5.25532 5.31397 5.38913 5.46683 5.59013 5.66147 5.69483 5.78172 5.91065 6.24499 6.27084 6.57336 6.86912 7.33345 8.80999 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.008607 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.203683 B = 3252.486320 C = 3502.422059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.125 3.875 4 C -0.078 4.078 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.130 4.130 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.130 4.130 11 C -0.127 4.127 12 C 0.191 3.809 13 C -0.154 4.154 14 C -0.511 4.511 15 H 0.034 0.966 16 C 0.031 3.969 17 N -0.944 5.944 18 Si 0.936 3.064 19 H -0.279 1.279 20 H -0.317 1.317 21 H -0.205 1.205 22 O -0.377 6.377 23 H 0.068 0.932 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 -11.857 -15.280 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C 0.085 3.915 4 C -0.079 4.079 5 C -0.141 4.141 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.139 4.139 9 C -0.137 4.137 10 C -0.167 4.167 11 C -0.165 4.165 12 C 0.153 3.847 13 C -0.211 4.211 14 C -0.549 4.549 15 H 0.053 0.947 16 C -0.168 4.168 17 N -0.584 5.584 18 Si 0.764 3.236 19 H -0.206 1.206 20 H -0.246 1.246 21 H -0.128 1.128 22 O -0.297 6.297 23 H 0.087 0.913 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.314 -11.745 -15.099 19.132 hybrid contribution -0.558 0.563 1.172 1.415 sum -0.243 -11.182 -13.927 17.862 Atomic orbital electron populations 1.21662 0.96178 1.01350 1.00841 1.21853 0.96372 0.93907 1.02972 1.21115 0.93988 0.92077 0.84272 1.20147 0.97191 0.95512 0.95021 1.21091 0.97871 0.96300 0.98868 1.21326 1.00674 1.00113 0.93511 1.21387 0.99414 0.97840 0.96135 1.21425 0.97210 0.95389 0.99873 1.21154 1.00780 1.00851 0.90933 1.23184 0.93411 0.99368 1.00751 1.22996 0.99308 0.97982 0.96223 1.20188 0.83090 0.91323 0.90113 1.22344 1.00576 0.98903 0.99250 1.21208 1.20658 0.96260 1.16764 0.94734 1.25806 0.97198 0.98399 0.95403 1.70060 1.35690 1.27309 1.25369 0.86169 0.76112 0.81203 0.80069 1.20575 1.24590 1.12770 1.88803 1.32108 1.77843 1.30992 0.91338 0.95151 0.93185 0.88642 0.91592 0.88949 0.86276 0.83907 0.83012 0.83793 0.89153 0.88576 0.93649 0.90029 0.95155 0.91905 0.91219 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.50 71.98 0.68 -3.50 16 2 C -0.11 -3.14 4.86 30.59 0.15 -2.99 16 3 C 0.13 4.21 0.76 -11.07 -0.01 4.20 16 4 C -0.08 -2.58 3.25 -19.87 -0.06 -2.65 16 5 C -0.12 -4.71 9.39 22.27 0.21 -4.50 16 6 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 7 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 8 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 9 C -0.12 -3.00 8.40 22.27 0.19 -2.82 16 10 C -0.13 -3.81 5.60 31.85 0.18 -3.64 16 11 C -0.13 -4.86 6.01 32.05 0.19 -4.67 16 12 C 0.19 8.70 0.67 -10.88 -0.01 8.69 16 13 C -0.15 -6.27 8.33 71.98 0.60 -5.67 16 14 C -0.51 -29.67 8.90 25.60 0.23 -29.44 16 15 H 0.03 2.23 8.01 -2.91 -0.02 2.20 16 16 C 0.03 1.84 5.45 84.65 0.46 2.30 16 17 N -0.94 -60.90 13.96 21.45 0.30 -60.60 16 18 Si 0.94 47.52 23.95 68.60 1.64 49.16 16 19 H -0.28 -13.50 6.88 99.48 0.68 -12.81 16 20 H -0.32 -16.52 7.11 99.48 0.71 -15.81 16 21 H -0.21 -9.80 5.43 99.48 0.54 -9.26 16 22 O -0.38 -16.67 5.39 -148.98 -0.80 -17.47 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.03 1.07 7.89 -2.39 -0.02 1.05 16 25 H 0.05 1.47 7.05 -2.38 -0.02 1.45 16 26 H 0.10 1.99 7.69 -2.39 -0.02 1.97 16 27 H 0.07 1.83 7.98 -2.38 -0.02 1.81 16 28 H 0.09 4.34 7.03 -2.91 -0.02 4.32 16 29 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.14 2.75 7.65 -2.91 -0.02 2.73 16 33 H 0.09 2.29 7.10 -2.39 -0.02 2.27 16 34 H 0.10 2.33 7.50 -2.39 -0.02 2.32 16 35 H 0.04 1.92 8.04 -2.38 -0.02 1.90 16 36 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 37 H 0.03 1.33 3.26 -2.39 -0.01 1.32 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.32 7.33 -2.39 -0.02 2.30 16 40 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 Total: -1.00 -70.39 307.32 5.43 -64.96 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.81 Total: 18.31 kcal Atomic # 6 Polarization: -57.84 SS G_CDS: 3.48 Total: -54.36 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.30 Total: -60.60 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.80 Total: -17.47 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.64 Total: 49.16 kcal Total: -70.39 5.43 -64.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383286227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.145 kcal (2) G-P(sol) polarization free energy of solvation -70.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds