Wall clock time and date at job start Mon Mar 30 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 112.84758 * 2 1 4 4 C 1.53776 * 113.61366 * 228.69477 * 2 1 3 5 5 C 1.53783 * 87.08083 * 220.01439 * 4 2 1 6 6 C 1.53777 * 113.61757 * 131.19549 * 2 1 3 7 7 H 1.09000 * 113.61168 * 25.35129 * 6 2 1 8 8 N 1.46502 * 113.61881 * 254.53153 * 6 2 1 9 9 C 1.39852 * 120.00348 * 154.99864 * 8 6 2 10 10 C 1.39597 * 119.83692 * 359.97438 * 9 8 6 11 11 C 1.38063 * 120.54948 * 180.27803 * 10 9 8 12 12 C 1.38732 * 120.21768 * 359.44663 * 11 10 9 13 13 N 1.38864 * 120.16310 * 180.25554 * 12 11 10 14 14 C 1.41570 * 119.67389 * 0.52651 * 12 11 10 15 15 C 1.41022 * 120.26927 * 179.77458 * 14 12 11 16 16 H 1.08002 * 120.00245 * 25.52990 * 15 14 12 17 17 C 1.39891 * 119.99795 * 205.53971 * 15 14 12 18 18 N 1.30892 * 119.99930 * 15.35269 * 17 15 14 19 19 Si 1.86802 * 119.99497 * 195.35363 * 17 15 14 20 20 H 1.48503 * 109.47232 * 90.00080 * 19 17 15 21 21 H 1.48498 * 109.46738 * 209.99779 * 19 17 15 22 22 H 1.48492 * 109.47458 * 329.99755 * 19 17 15 23 23 C 1.37995 * 119.84113 * 179.97438 * 9 8 6 24 24 H 1.09005 * 109.46694 * 288.79971 * 1 2 3 25 25 H 1.08998 * 109.47466 * 48.79867 * 1 2 3 26 26 H 1.09001 * 109.47169 * 168.80370 * 1 2 3 27 27 H 1.08998 * 109.47108 * 191.19480 * 3 2 1 28 28 H 1.09005 * 109.47143 * 311.19939 * 3 2 1 29 29 H 1.09001 * 109.47028 * 71.20332 * 3 2 1 30 30 H 1.09000 * 113.61549 * 334.56740 * 4 2 1 31 31 H 1.09005 * 113.61183 * 105.38559 * 4 2 1 32 32 H 1.08996 * 113.61403 * 270.88360 * 5 4 2 33 33 H 1.09001 * 113.60849 * 139.97995 * 5 4 2 34 34 H 0.97001 * 119.99786 * 334.99663 * 8 6 2 35 35 H 1.08006 * 119.73121 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.89008 * 179.72611 * 11 10 9 37 37 H 0.97001 * 119.99902 * 180.27326 * 13 12 11 38 38 H 0.96987 * 120.00149 * 0.27117 * 13 12 11 39 39 H 0.97008 * 119.99687 * 179.97438 * 18 17 15 40 40 H 1.08007 * 120.11519 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9300 -1.0584 5 6 3.1924 -1.3135 0.0012 6 6 2.1461 -0.9280 1.0602 7 1 1.4940 -1.7514 1.3516 8 7 2.7092 -0.2143 2.2090 9 6 2.8215 -0.8578 3.4456 10 6 2.3954 -2.1802 3.5816 11 6 2.4941 -2.8278 4.7969 12 6 3.0301 -2.1723 5.8959 13 7 3.1337 -2.8265 7.1164 14 6 3.4656 -0.8313 5.7684 15 6 4.0080 -0.1515 6.8785 16 1 4.4729 -0.7085 7.6785 17 6 3.9438 1.2445 6.9435 18 7 3.1348 1.9000 6.1503 19 14 5.0126 2.1728 8.1623 20 1 6.3110 2.5102 7.5254 21 1 4.3235 3.4222 8.5735 22 1 5.2530 1.3240 9.3567 23 6 3.3530 -0.1825 4.5253 24 1 -0.3633 0.3312 0.9729 25 1 -0.3634 0.6769 -0.7732 26 1 -0.3633 -1.0081 -0.1995 27 1 3.1941 1.3534 -0.1995 28 1 1.6413 2.0077 -0.7733 29 1 1.9600 1.8734 0.9729 30 1 1.4945 -1.7548 -1.3473 31 1 2.5637 -0.4006 -1.9149 32 1 4.0711 -0.6686 0.0006 33 1 3.4443 -2.3740 0.0022 34 1 3.0043 0.7047 2.1119 35 1 1.9805 -2.6995 2.7303 36 1 2.1571 -3.8495 4.8913 37 1 3.5052 -2.3646 7.8842 38 1 2.8346 -3.7452 7.2011 39 1 3.0901 2.8680 6.1957 40 1 3.6820 0.8404 4.4162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383433400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:57 Heat of formation + Delta-G solvation = 34.787290 kcal Electronic energy + Delta-G solvation = -19537.858154 eV Core-core repulsion = 16738.149157 eV Total energy + Delta-G solvation = -2799.708997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72020 -37.60185 -34.31414 -33.42342 -31.12117 -30.35498 -29.36285 -27.37290 -26.61041 -24.75882 -23.64326 -22.17572 -21.11825 -19.63099 -18.04048 -17.07328 -16.07346 -15.57122 -15.17654 -15.00674 -14.68845 -14.44357 -13.82957 -13.05241 -12.99446 -12.51758 -12.41784 -12.11134 -12.07685 -11.95563 -11.76973 -11.48824 -11.33729 -11.23096 -11.05426 -10.99216 -10.55359 -10.33566 -10.14197 -10.00596 -9.66350 -9.51288 -9.26403 -9.03690 -7.68423 -7.19214 -6.58174 -5.48620 -4.03754 2.93084 3.14829 3.17292 3.34019 3.51127 4.05113 4.50474 4.67375 4.78081 4.87425 5.03281 5.22603 5.43227 5.45571 5.67400 5.76899 5.79436 5.87375 5.92315 5.98564 6.00588 6.10933 6.22034 6.24694 6.33888 6.40636 6.61775 6.62507 6.73168 7.15858 7.20417 7.36036 7.53204 7.75887 7.92354 8.04673 8.17191 8.49814 8.80539 8.95111 8.98851 9.04006 9.29343 9.37947 10.40141 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.005769 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.112794 B = 4852.515653 C = 5745.556951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.133 4.133 5 C -0.160 4.160 6 C 0.155 3.845 7 H 0.098 0.902 8 N -0.748 5.748 9 C 0.177 3.823 10 C -0.256 4.256 11 C -0.152 4.152 12 C 0.083 3.917 13 N -0.889 5.889 14 C 0.094 3.906 15 C -0.463 4.463 16 H 0.070 0.930 17 C 0.076 3.924 18 N -0.801 5.801 19 Si 0.902 3.098 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.266 1.266 23 C -0.201 4.201 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.388 0.612 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.388 0.612 38 H 0.374 0.626 39 H 0.274 0.726 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -1.793 -9.385 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.186 4.186 4 C -0.171 4.171 5 C -0.199 4.199 6 C 0.047 3.953 7 H 0.116 0.884 8 N -0.381 5.381 9 C 0.078 3.922 10 C -0.279 4.279 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.089 3.911 15 C -0.495 4.495 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.428 5.428 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.190 1.190 23 C -0.226 4.226 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.223 0.777 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.216 0.784 38 H 0.198 0.802 39 H 0.085 0.915 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.033 -1.626 -9.558 9.906 hybrid contribution 0.511 0.637 0.794 1.139 sum -1.521 -0.989 -8.764 8.950 Atomic orbital electron populations 1.21713 0.94403 1.01262 1.01747 1.22289 0.95260 0.95469 0.96992 1.21522 1.00390 0.94694 1.02006 1.22895 0.98664 0.99071 0.96462 1.23521 0.98138 1.01249 0.97030 1.22150 0.94036 0.94637 0.84469 0.88387 1.44399 1.71754 1.14805 1.07123 1.17556 0.97989 0.91661 0.84953 1.19634 1.16638 0.94731 0.96933 1.19702 1.07378 0.97733 0.92859 1.17853 1.03977 0.93996 0.85923 1.41803 1.75988 1.14887 1.10519 1.16979 0.92349 0.89019 0.92745 1.19139 1.34377 0.91048 1.04890 0.91155 1.25742 0.94035 0.98161 0.96042 1.69881 1.29303 1.08892 1.34698 0.86421 0.80692 0.79028 0.81074 1.19660 1.20653 1.18990 1.20528 1.10505 1.00927 0.90606 0.92271 0.93109 0.92789 0.92466 0.92768 0.91753 0.90436 0.91735 0.90297 0.91870 0.77702 0.89706 0.89877 0.78378 0.80157 0.91529 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.19 37.16 0.34 -1.31 16 2 C -0.10 -1.30 1.37 -153.70 -0.21 -1.51 16 3 C -0.13 -1.63 8.05 37.16 0.30 -1.33 16 4 C -0.13 -1.57 7.20 -25.92 -0.19 -1.75 16 5 C -0.16 -2.24 7.53 -25.92 -0.20 -2.44 16 6 C 0.16 2.48 3.50 -67.12 -0.23 2.25 16 7 H 0.10 1.66 6.07 -51.93 -0.32 1.35 16 8 N -0.75 -14.49 5.40 -51.39 -0.28 -14.76 16 9 C 0.18 4.15 6.64 -83.78 -0.56 3.60 16 10 C -0.26 -5.87 9.26 -39.14 -0.36 -6.24 16 11 C -0.15 -3.55 9.86 -39.46 -0.39 -3.93 16 12 C 0.08 2.05 6.79 -83.22 -0.56 1.48 16 13 N -0.89 -18.48 8.98 32.75 0.29 -18.19 16 14 C 0.09 2.53 5.58 -106.66 -0.60 1.93 16 15 C -0.46 -12.28 8.50 -37.91 -0.32 -12.60 16 16 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 17 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 18 N -0.80 -21.06 10.88 55.55 0.60 -20.46 16 19 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 23 C -0.20 -5.27 8.50 -38.75 -0.33 -5.60 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.62 7.94 -51.93 -0.41 0.21 16 27 H 0.06 0.71 7.35 -51.93 -0.38 0.32 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.90 7.10 -51.93 -0.37 0.53 16 30 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.08 1.14 7.66 -51.93 -0.40 0.74 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.39 7.30 6.66 -40.82 -0.27 7.03 16 35 H 0.08 1.77 6.02 -52.48 -0.32 1.46 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.39 7.92 7.04 -40.82 -0.29 7.64 16 38 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 39 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.22 6.14 -52.48 -0.32 2.90 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -27.94 315.80 -8.91 -36.85 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -5.87 Total: 23.33 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -3.40 Total: -25.62 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.62 Total: -53.41 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.94 -8.91 -36.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383433400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.635 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds