Wall clock time and date at job start Mon Mar 30 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 112.84758 * 2 1 4 4 C 1.53776 * 113.61366 * 228.69477 * 2 1 3 5 5 C 1.53783 * 87.08083 * 220.01439 * 4 2 1 6 6 C 1.53777 * 113.61757 * 131.19549 * 2 1 3 7 7 H 1.09000 * 113.61168 * 25.35129 * 6 2 1 8 8 N 1.46502 * 113.61881 * 254.53153 * 6 2 1 9 9 C 1.39852 * 120.00348 * 154.99864 * 8 6 2 10 10 C 1.39597 * 119.83692 * 359.97438 * 9 8 6 11 11 C 1.38063 * 120.54948 * 180.27803 * 10 9 8 12 12 C 1.38732 * 120.21768 * 359.44663 * 11 10 9 13 13 N 1.38864 * 120.16310 * 180.25554 * 12 11 10 14 14 C 1.41570 * 119.67389 * 0.52651 * 12 11 10 15 15 C 1.41022 * 120.26927 * 179.77458 * 14 12 11 16 16 H 1.08002 * 120.00245 * 25.52990 * 15 14 12 17 17 C 1.39891 * 119.99795 * 205.53971 * 15 14 12 18 18 N 1.30892 * 119.99930 * 15.35269 * 17 15 14 19 19 Si 1.86802 * 119.99497 * 195.35363 * 17 15 14 20 20 H 1.48503 * 109.47232 * 90.00080 * 19 17 15 21 21 H 1.48498 * 109.46738 * 209.99779 * 19 17 15 22 22 H 1.48492 * 109.47458 * 329.99755 * 19 17 15 23 23 C 1.37995 * 119.84113 * 179.97438 * 9 8 6 24 24 H 1.09005 * 109.46694 * 288.79971 * 1 2 3 25 25 H 1.08998 * 109.47466 * 48.79867 * 1 2 3 26 26 H 1.09001 * 109.47169 * 168.80370 * 1 2 3 27 27 H 1.08998 * 109.47108 * 191.19480 * 3 2 1 28 28 H 1.09005 * 109.47143 * 311.19939 * 3 2 1 29 29 H 1.09001 * 109.47028 * 71.20332 * 3 2 1 30 30 H 1.09000 * 113.61549 * 334.56740 * 4 2 1 31 31 H 1.09005 * 113.61183 * 105.38559 * 4 2 1 32 32 H 1.08996 * 113.61403 * 270.88360 * 5 4 2 33 33 H 1.09001 * 113.60849 * 139.97995 * 5 4 2 34 34 H 0.97001 * 119.99786 * 334.99663 * 8 6 2 35 35 H 1.08006 * 119.73121 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.89008 * 179.72611 * 11 10 9 37 37 H 0.97001 * 119.99902 * 180.27326 * 13 12 11 38 38 H 0.96987 * 120.00149 * 0.27117 * 13 12 11 39 39 H 0.97008 * 119.99687 * 179.97438 * 18 17 15 40 40 H 1.08007 * 120.11519 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9300 -1.0584 5 6 3.1924 -1.3135 0.0012 6 6 2.1461 -0.9280 1.0602 7 1 1.4940 -1.7514 1.3516 8 7 2.7092 -0.2143 2.2090 9 6 2.8215 -0.8578 3.4456 10 6 2.3954 -2.1802 3.5816 11 6 2.4941 -2.8278 4.7969 12 6 3.0301 -2.1723 5.8959 13 7 3.1337 -2.8265 7.1164 14 6 3.4656 -0.8313 5.7684 15 6 4.0080 -0.1515 6.8785 16 1 4.4729 -0.7085 7.6785 17 6 3.9438 1.2445 6.9435 18 7 3.1348 1.9000 6.1503 19 14 5.0126 2.1728 8.1623 20 1 6.3110 2.5102 7.5254 21 1 4.3235 3.4222 8.5735 22 1 5.2530 1.3240 9.3567 23 6 3.3530 -0.1825 4.5253 24 1 -0.3633 0.3312 0.9729 25 1 -0.3634 0.6769 -0.7732 26 1 -0.3633 -1.0081 -0.1995 27 1 3.1941 1.3534 -0.1995 28 1 1.6413 2.0077 -0.7733 29 1 1.9600 1.8734 0.9729 30 1 1.4945 -1.7548 -1.3473 31 1 2.5637 -0.4006 -1.9149 32 1 4.0711 -0.6686 0.0006 33 1 3.4443 -2.3740 0.0022 34 1 3.0043 0.7047 2.1119 35 1 1.9805 -2.6995 2.7303 36 1 2.1571 -3.8495 4.8913 37 1 3.5052 -2.3646 7.8842 38 1 2.8346 -3.7452 7.2011 39 1 3.0901 2.8680 6.1957 40 1 3.6820 0.8404 4.4162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383433400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:57 Heat of formation + Delta-G solvation = 18.966315 kcal Electronic energy + Delta-G solvation = -19538.544203 eV Core-core repulsion = 16738.149157 eV Total energy + Delta-G solvation = -2800.395046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92956 -39.37449 -35.99199 -35.30381 -32.73288 -31.48244 -31.23697 -28.47275 -28.25681 -26.60688 -24.97770 -23.31096 -22.93077 -21.41170 -19.30680 -18.88083 -17.68036 -17.30635 -16.76011 -16.52055 -16.31886 -15.69417 -15.05959 -14.54723 -14.27863 -14.13250 -14.04861 -13.78991 -13.40713 -13.20099 -13.10219 -13.03923 -12.84866 -12.68267 -12.67754 -12.31914 -12.06472 -11.82197 -11.62450 -11.43426 -11.09453 -10.94877 -10.93109 -10.85432 -9.32184 -9.12575 -8.48243 -7.25903 -5.99231 1.13265 1.40987 1.52230 1.52797 1.67178 2.27413 2.92074 3.05688 3.57842 3.74123 3.78498 3.91566 3.97799 4.14788 4.37808 4.59049 4.63047 4.70241 4.76499 4.82307 4.92704 4.95343 5.00659 5.11550 5.14288 5.22077 5.24772 5.29974 5.37312 5.44628 5.54412 5.60179 5.71651 5.92780 6.08683 6.19797 6.32778 6.59234 6.98852 7.09314 7.17593 7.30966 7.49953 7.68240 8.51916 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.005769 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.112794 B = 4852.515653 C = 5745.556951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.158 4.158 6 C 0.136 3.864 7 H 0.089 0.911 8 N -0.745 5.745 9 C 0.175 3.825 10 C -0.260 4.260 11 C -0.157 4.157 12 C 0.067 3.933 13 N -0.879 5.879 14 C 0.060 3.940 15 C -0.491 4.491 16 H 0.073 0.927 17 C 0.032 3.968 18 N -0.833 5.833 19 Si 0.975 3.025 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.228 4.228 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.388 0.612 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 -2.291 -10.614 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.096 4.096 3 C -0.185 4.185 4 C -0.152 4.152 5 C -0.197 4.197 6 C 0.029 3.971 7 H 0.107 0.893 8 N -0.377 5.377 9 C 0.074 3.926 10 C -0.283 4.283 11 C -0.182 4.182 12 C -0.035 4.035 13 N -0.423 5.423 14 C 0.054 3.946 15 C -0.523 4.523 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.461 5.461 19 Si 0.798 3.202 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.252 4.252 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.223 0.777 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.217 0.783 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.253 -2.153 -10.813 11.253 hybrid contribution 0.521 0.733 1.088 1.412 sum -1.732 -1.419 -9.725 9.979 Atomic orbital electron populations 1.21710 0.93673 1.02366 1.01226 1.22284 0.95836 0.95405 0.96036 1.21519 1.00745 0.94671 1.01576 1.22838 0.97425 0.98978 0.95955 1.23461 0.98012 1.01202 0.97042 1.22503 0.95226 0.95319 0.84019 0.89270 1.44498 1.71479 1.14879 1.06845 1.17674 0.96993 0.92063 0.85851 1.19942 1.16098 0.94559 0.97738 1.20050 1.06662 0.98919 0.92532 1.18024 1.04219 0.93713 0.87548 1.41668 1.75689 1.15567 1.09408 1.17379 0.93427 0.90509 0.93245 1.19396 1.35506 0.92053 1.05314 0.90853 1.26570 0.94857 0.98696 0.97903 1.69971 1.30533 1.09297 1.36302 0.85307 0.78553 0.77647 0.78721 1.19443 1.19998 1.18186 1.20494 1.12478 1.00414 0.91849 0.94398 0.91186 0.91748 0.92353 0.90660 0.93793 0.88836 0.89911 0.90888 0.91766 0.77739 0.87549 0.87229 0.78265 0.78244 0.91149 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.09 -2.30 1.37 -51.66 -0.07 -2.37 16 3 C -0.13 -3.06 8.05 71.98 0.58 -2.48 16 4 C -0.11 -2.33 7.20 31.12 0.22 -2.10 16 5 C -0.16 -4.15 7.53 31.12 0.23 -3.91 16 6 C 0.14 4.22 3.50 45.52 0.16 4.38 16 7 H 0.09 2.92 6.07 -2.39 -0.01 2.90 16 8 N -0.74 -29.25 5.40 -316.50 -1.71 -30.96 16 9 C 0.17 8.37 6.64 38.13 0.25 8.62 16 10 C -0.26 -11.82 9.26 22.56 0.21 -11.62 16 11 C -0.16 -7.21 9.86 22.35 0.22 -6.99 16 12 C 0.07 3.30 6.79 38.97 0.26 3.57 16 13 N -0.88 -36.20 8.98 -50.31 -0.45 -36.65 16 14 C 0.06 3.29 5.58 -21.18 -0.12 3.17 16 15 C -0.49 -26.74 8.50 23.35 0.20 -26.54 16 16 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 17 C 0.03 1.67 5.18 85.23 0.44 2.12 16 18 N -0.83 -45.30 10.88 21.82 0.24 -45.06 16 19 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C -0.23 -12.41 8.50 22.81 0.19 -12.22 16 24 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.31 7.94 -2.39 -0.02 1.29 16 27 H 0.06 1.37 7.35 -2.39 -0.02 1.35 16 28 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.04 1.22 7.10 -2.39 -0.02 1.21 16 30 H 0.09 1.65 7.96 -2.39 -0.02 1.63 16 31 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 32 H 0.07 2.01 7.66 -2.39 -0.02 1.99 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.39 15.06 6.66 -92.71 -0.62 14.44 16 35 H 0.11 4.30 6.02 -2.91 -0.02 4.29 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.39 15.88 7.04 -92.71 -0.65 15.23 16 38 H 0.39 13.25 8.83 -92.72 -0.82 12.43 16 39 H 0.28 13.90 8.30 -92.70 -0.77 13.13 16 40 H 0.10 5.60 6.14 -2.91 -0.02 5.58 16 Total: -1.00 -61.35 315.80 2.54 -58.81 By element: Atomic # 1 Polarization: 61.79 SS G_CDS: -1.02 Total: 60.78 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 3.45 Total: -48.72 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -1.92 Total: -112.68 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -61.35 2.54 -58.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383433400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.775 kcal (2) G-P(sol) polarization free energy of solvation -61.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds