Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.90863 * 2 1 4 4 C 1.53960 * 113.60953 * 228.67330 * 2 1 3 5 5 C 1.53779 * 87.11346 * 270.84092 * 4 2 1 6 6 C 1.53778 * 87.08337 * 334.64104 * 5 4 2 7 7 H 1.09003 * 113.61440 * 270.79888 * 6 5 4 8 8 N 1.46504 * 113.61484 * 139.97673 * 6 5 4 9 9 C 1.39857 * 119.99806 * 105.86624 * 8 6 5 10 10 C 1.39606 * 119.83766 * 0.24860 * 9 8 6 11 11 C 1.38061 * 120.54429 * 180.26146 * 10 9 8 12 12 C 1.38737 * 120.22074 * 359.48846 * 11 10 9 13 13 N 1.38863 * 120.15918 * 180.28014 * 12 11 10 14 14 C 1.41563 * 119.67180 * 0.25404 * 12 11 10 15 15 C 1.41027 * 120.26413 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00153 * 333.62661 * 15 14 12 17 17 C 1.39888 * 120.00179 * 153.62110 * 15 14 12 18 18 N 1.30904 * 119.99638 * 343.97991 * 17 15 14 19 19 Si 1.86794 * 120.00249 * 163.97422 * 17 15 14 20 20 H 1.48509 * 109.47069 * 60.00248 * 19 17 15 21 21 H 1.48494 * 109.47521 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47411 * 300.00674 * 19 17 15 23 23 C 1.38002 * 119.83825 * 180.02562 * 9 8 6 24 24 H 1.09001 * 109.47061 * 288.74542 * 1 2 3 25 25 H 1.09000 * 109.47290 * 48.74374 * 1 2 3 26 26 H 1.09002 * 109.47315 * 168.74923 * 1 2 3 27 27 H 1.09006 * 109.47163 * 191.24895 * 3 2 1 28 28 H 1.08988 * 109.47076 * 311.25131 * 3 2 1 29 29 H 1.09004 * 109.46803 * 71.25629 * 3 2 1 30 30 H 1.08997 * 113.53288 * 156.29366 * 4 2 1 31 31 H 1.08996 * 113.74304 * 25.42742 * 4 2 1 32 32 H 1.08994 * 113.61619 * 220.09048 * 5 4 2 33 33 H 1.09005 * 113.60938 * 89.18857 * 5 4 2 34 34 H 0.96998 * 120.00205 * 285.85833 * 8 6 5 35 35 H 1.07999 * 119.72767 * 0.02562 * 10 9 8 36 36 H 1.07994 * 119.88815 * 179.76898 * 11 10 9 37 37 H 0.97001 * 120.00364 * 359.97438 * 13 12 11 38 38 H 0.97005 * 119.99566 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99760 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.11566 * 359.97230 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1466 -0.9316 -1.0594 5 6 2.0949 -2.0439 0.0012 6 6 2.1460 -0.9292 1.0593 7 1 3.1586 -0.6492 1.3500 8 7 1.2703 -1.1705 2.2088 9 6 1.8182 -1.5560 3.4364 10 6 3.2005 -1.7048 3.5642 11 6 3.7565 -2.0899 4.7678 12 6 2.9453 -2.3234 5.8688 13 7 3.5064 -2.7051 7.0803 14 6 1.5429 -2.1702 5.7511 15 6 0.7066 -2.4038 6.8624 16 1 1.0232 -3.0786 7.6441 17 6 -0.5328 -1.7615 6.9524 18 7 -0.7895 -0.7253 6.1948 19 14 -1.8216 -2.3827 8.1533 20 1 -1.2826 -2.3173 9.5356 21 1 -3.0381 -1.5367 8.0555 22 1 -2.1690 -3.7884 7.8236 23 6 0.9903 -1.7830 4.5169 24 1 -0.3633 0.3303 0.9732 25 1 -0.3634 0.6777 -0.7726 26 1 -0.3634 -1.0079 -0.2005 27 1 3.1955 1.3516 -0.2005 28 1 1.6429 2.0077 -0.7725 29 1 1.9628 1.8725 0.9732 30 1 3.1593 -0.6512 -1.3490 31 1 1.4967 -1.1137 -1.9153 32 1 2.9746 -2.6875 0.0022 33 1 1.1596 -2.6037 0.0015 34 1 0.3106 -1.0629 2.1184 35 1 3.8398 -1.5208 2.7134 36 1 4.8268 -2.2053 4.8537 37 1 4.4676 -2.8094 7.1582 38 1 2.9369 -2.8681 7.8485 39 1 -1.6490 -0.2802 6.2570 40 1 -0.0783 -1.6630 4.4154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383433410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = 34.458938 kcal Electronic energy + Delta-G solvation = -19534.448981 eV Core-core repulsion = 16734.725745 eV Total energy + Delta-G solvation = -2799.723236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71191 -37.59965 -34.31203 -33.41268 -31.12074 -30.36325 -29.36950 -27.37971 -26.60855 -24.75356 -23.64195 -22.17403 -21.12356 -19.62999 -18.04020 -17.06866 -16.07296 -15.57108 -15.17510 -15.01126 -14.69837 -14.45180 -13.81879 -13.05438 -12.99409 -12.52069 -12.41089 -12.11668 -12.07520 -11.96118 -11.77139 -11.49424 -11.34043 -11.22913 -11.06038 -10.98215 -10.55025 -10.36093 -10.14958 -10.00846 -9.67143 -9.51755 -9.26207 -9.01921 -7.68575 -7.18940 -6.58563 -5.48551 -4.03530 2.94645 3.13885 3.16913 3.34142 3.50993 4.05456 4.50145 4.66386 4.77891 4.87136 5.03139 5.22454 5.42652 5.45638 5.67074 5.76399 5.79021 5.87138 5.92034 5.98437 6.00154 6.10473 6.21768 6.24381 6.33631 6.40476 6.61417 6.62556 6.72910 7.15982 7.20218 7.35349 7.53076 7.75850 7.91921 8.03859 8.16876 8.49649 8.80211 8.94971 8.98708 9.03848 9.29251 9.37939 10.40578 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.005768 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.847376 B = 4852.998171 C = 5748.046882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C -0.134 4.134 4 C -0.133 4.133 5 C -0.160 4.160 6 C 0.155 3.845 7 H 0.097 0.903 8 N -0.748 5.748 9 C 0.177 3.823 10 C -0.255 4.255 11 C -0.152 4.152 12 C 0.084 3.916 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.801 5.801 19 Si 0.901 3.099 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.200 4.200 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.388 0.612 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.275 0.725 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 1.057 -9.461 9.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.171 4.171 5 C -0.199 4.199 6 C 0.047 3.953 7 H 0.115 0.885 8 N -0.381 5.381 9 C 0.079 3.921 10 C -0.279 4.279 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.496 4.496 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.428 5.428 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.225 4.225 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.223 0.777 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.229 1.283 -9.633 9.971 hybrid contribution -0.788 -0.222 0.805 1.148 sum 1.442 1.061 -8.829 9.008 Atomic orbital electron populations 1.21521 0.93467 1.01646 1.01986 1.22309 0.95894 0.94795 0.96955 1.21709 1.00060 0.95596 1.01754 1.22926 1.00558 0.97150 0.96455 1.23516 1.01993 0.97404 0.97024 1.22143 0.95220 0.93433 0.84467 0.88485 1.44404 1.07167 1.78780 1.07777 1.17553 0.92073 0.97408 0.85104 1.19630 0.92396 1.18570 0.97291 1.19706 0.96134 1.08822 0.93007 1.17859 0.92331 1.05448 0.86088 1.41804 1.07506 1.82675 1.11200 1.16962 0.88610 0.92677 0.92703 1.19089 1.00743 1.24158 1.05658 0.91204 1.25734 0.98787 0.93390 0.95971 1.69876 1.22790 1.14759 1.35339 0.86497 0.79980 0.79744 0.81108 1.19383 1.20650 1.19197 1.20475 0.98439 1.12842 0.90734 0.91783 0.92750 0.92436 0.92773 0.93091 0.92265 0.90450 0.91722 0.91864 0.90289 0.77704 0.89700 0.89871 0.80153 0.78375 0.91462 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.07 37.16 0.30 -1.32 16 2 C -0.10 -1.29 1.37 -153.60 -0.21 -1.50 16 3 C -0.13 -1.65 9.20 37.16 0.34 -1.30 16 4 C -0.13 -1.57 7.20 -25.83 -0.19 -1.75 16 5 C -0.16 -2.24 7.53 -25.92 -0.20 -2.44 16 6 C 0.16 2.48 3.46 -67.11 -0.23 2.25 16 7 H 0.10 1.64 6.13 -51.93 -0.32 1.32 16 8 N -0.75 -14.48 5.42 -51.38 -0.28 -14.76 16 9 C 0.18 4.16 6.64 -83.77 -0.56 3.60 16 10 C -0.26 -5.86 9.26 -39.14 -0.36 -6.22 16 11 C -0.15 -3.54 9.86 -39.46 -0.39 -3.93 16 12 C 0.08 2.05 6.79 -83.23 -0.56 1.49 16 13 N -0.89 -18.48 8.98 32.75 0.29 -18.19 16 14 C 0.10 2.57 5.57 -106.66 -0.59 1.97 16 15 C -0.47 -12.33 8.48 -37.91 -0.32 -12.65 16 16 H 0.07 1.76 6.71 -52.48 -0.35 1.41 16 17 C 0.08 1.96 5.16 -17.33 -0.09 1.87 16 18 N -0.80 -21.10 10.97 55.55 0.61 -20.49 16 19 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.20 -5.25 8.49 -38.75 -0.33 -5.58 16 24 H 0.06 0.89 7.07 -51.93 -0.37 0.52 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.71 7.35 -51.93 -0.38 0.33 16 27 H 0.05 0.62 7.95 -51.93 -0.41 0.20 16 28 H 0.05 0.55 8.14 -51.94 -0.42 0.13 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.14 7.66 -51.93 -0.40 0.74 16 34 H 0.39 7.29 6.62 -40.82 -0.27 7.02 16 35 H 0.08 1.77 6.04 -52.49 -0.32 1.46 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 38 H 0.39 7.92 7.06 -40.82 -0.29 7.63 16 39 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.12 3.15 6.23 -52.48 -0.33 2.82 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -27.97 316.01 -8.91 -36.87 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -5.88 Total: 23.26 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -3.39 Total: -25.53 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.63 Total: -53.44 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.97 -8.91 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383433410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.333 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds