Wall clock time and date at job start Mon Mar 30 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38239 * 119.99397 * 179.74382 * 4 3 2 6 6 C 1.38235 * 120.00172 * 0.55065 * 5 4 3 7 7 C 1.50701 * 119.99779 * 179.72823 * 6 5 4 8 8 H 1.08999 * 109.47389 * 204.97906 * 7 6 5 9 9 C 1.53086 * 109.48186 * 84.95545 * 7 6 5 10 10 C 1.53180 * 109.16036 * 182.41765 * 9 7 6 11 11 C 1.53183 * 109.04690 * 56.96232 * 10 9 7 12 12 C 1.53087 * 109.16206 * 303.02832 * 11 10 9 13 13 H 1.09003 * 109.49359 * 177.59888 * 12 11 10 14 14 C 1.50706 * 109.47707 * 297.62303 * 12 11 10 15 15 H 1.07999 * 120.00356 * 359.94522 * 14 12 11 16 16 C 1.37878 * 119.99825 * 179.97438 * 14 12 11 17 17 N 1.31521 * 120.00036 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 120.00103 * 359.97438 * 16 14 12 19 19 H 1.48499 * 109.46732 * 90.00604 * 18 16 14 20 20 H 1.48497 * 109.47354 * 210.00145 * 18 16 14 21 21 H 1.48495 * 109.47070 * 330.00344 * 18 16 14 22 22 O 1.42900 * 109.47930 * 324.99403 * 7 6 5 23 23 C 1.38232 * 119.99913 * 359.70277 * 6 5 4 24 24 C 1.38233 * 119.99928 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 30 30 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.99418 * 180.27454 * 5 4 3 32 32 H 1.09002 * 109.52378 * 302.31007 * 9 7 6 33 33 H 1.08994 * 109.52338 * 62.49908 * 9 7 6 34 34 H 1.08991 * 109.53938 * 297.09670 * 10 9 7 35 35 H 1.08998 * 109.54664 * 176.83209 * 10 9 7 36 36 H 1.08996 * 109.52125 * 183.11861 * 11 10 9 37 37 H 1.09000 * 109.57080 * 62.96270 * 11 10 9 38 38 H 0.97001 * 119.99727 * 179.97438 * 17 16 14 39 39 H 1.08002 * 119.99819 * 180.02562 * 23 6 5 40 40 H 1.08003 * 119.99863 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7238 3.3757 -1.1970 6 6 2.9547 4.0272 0.0002 7 6 3.4573 5.4479 0.0001 8 1 3.9879 5.6456 0.9315 9 6 2.2723 6.4087 -0.1264 10 6 2.7955 7.8471 -0.1865 11 6 3.7750 7.9743 -1.3574 12 6 4.9019 6.9529 -1.1830 13 1 5.5792 7.0094 -2.0352 14 6 5.6615 7.2539 0.0833 15 1 5.3707 8.0903 0.7016 16 6 6.7281 6.4619 0.4522 17 7 7.3906 6.7242 1.5576 18 14 7.2312 5.0152 -0.6172 19 1 8.2313 5.4645 -1.6189 20 1 7.8257 3.9535 0.2339 21 1 6.0367 4.4779 -1.3169 22 8 4.3446 5.6394 -1.1036 23 6 2.7239 3.3756 1.1972 24 6 2.2628 2.0724 1.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0926 1.5599 -2.1324 31 1 2.9038 3.8848 -2.1324 32 1 1.7174 6.1848 -1.0375 33 1 1.6173 6.2950 0.7373 34 1 3.3077 8.0879 0.7450 35 1 1.9611 8.5329 -0.3331 36 1 4.1944 8.9802 -1.3738 37 1 3.2513 7.7826 -2.2939 38 1 8.1408 6.1668 1.8173 39 1 2.9039 3.8847 2.1326 40 1 2.0829 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383662920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:24 Heat of formation + Delta-G solvation = -41.982694 kcal Electronic energy + Delta-G solvation = -19925.852451 eV Core-core repulsion = 17090.521706 eV Total energy + Delta-G solvation = -2835.330745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48628 -38.08226 -34.30747 -32.65286 -32.43234 -30.96140 -30.56205 -28.38786 -25.85614 -24.24495 -22.50811 -22.31171 -21.86866 -20.16517 -18.82283 -16.84866 -16.17806 -15.36548 -15.21407 -14.71283 -14.28639 -14.03441 -13.79542 -13.47941 -13.44130 -13.30156 -12.92455 -12.54776 -12.41966 -12.19528 -11.90578 -11.64591 -11.42242 -11.21098 -10.83768 -10.69617 -10.61106 -10.37909 -10.24617 -9.96868 -9.77297 -9.69666 -8.78191 -8.60707 -8.55577 -8.27687 -7.79179 -6.10363 -4.18705 1.67729 1.77408 3.40042 3.50077 3.75549 4.08329 4.55346 4.79415 4.88564 4.95838 5.29017 5.30234 5.32950 5.38668 5.49900 5.56684 5.67478 5.72382 5.78645 5.79426 5.85231 6.00643 6.09141 6.11099 6.12394 6.26577 6.36404 6.39999 6.42418 6.53666 6.75677 6.76827 6.85405 6.87991 6.89822 7.01321 7.15700 7.35020 7.39104 7.65854 8.23935 8.68249 8.92408 9.54864 10.99965 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.006706 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.586224 B = 4174.648931 C = 4770.999995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.125 4.125 5 C -0.093 4.093 6 C -0.065 4.065 7 C 0.134 3.866 8 H 0.081 0.919 9 C -0.132 4.132 10 C -0.110 4.110 11 C -0.131 4.131 12 C 0.174 3.826 13 H 0.060 0.940 14 C -0.550 4.550 15 H 0.075 0.925 16 C 0.085 3.915 17 N -0.893 5.893 18 Si 0.858 3.142 19 H -0.286 1.286 20 H -0.295 1.295 21 H -0.215 1.215 22 O -0.386 6.386 23 C -0.111 4.111 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 -9.178 -3.276 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.143 4.143 5 C -0.111 4.111 6 C -0.066 4.066 7 C 0.076 3.924 8 H 0.099 0.901 9 C -0.170 4.170 10 C -0.148 4.148 11 C -0.169 4.169 12 C 0.118 3.882 13 H 0.078 0.922 14 C -0.587 4.587 15 H 0.093 0.907 16 C -0.119 4.119 17 N -0.530 5.530 18 Si 0.684 3.316 19 H -0.213 1.213 20 H -0.222 1.222 21 H -0.138 1.138 22 O -0.307 6.307 23 C -0.129 4.129 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.448 -9.371 -3.304 15.928 hybrid contribution 0.526 -0.408 -0.174 0.688 sum -11.922 -9.780 -3.478 15.807 Atomic orbital electron populations 1.21741 0.95075 1.01221 1.02199 1.20488 0.95891 0.93120 1.02400 1.19779 1.00562 0.95970 0.93386 1.20969 1.01105 0.95138 0.97090 1.21046 0.97397 0.94179 0.98505 1.20000 0.97404 0.96092 0.93062 1.20510 0.89700 0.88425 0.93765 0.90099 1.22039 0.97790 0.96197 1.00925 1.21465 0.97747 0.95096 1.00475 1.21965 0.97760 1.00540 0.96602 1.20142 0.90634 0.79618 0.97757 0.92246 1.21417 1.14067 1.15670 1.07530 0.90708 1.24971 0.95128 0.97189 0.94578 1.69954 1.20420 1.39294 1.23318 0.87194 0.80135 0.82893 0.81338 1.21310 1.22186 1.13758 1.88035 1.60901 1.34175 1.47576 1.21004 0.99534 0.94594 0.97787 1.20876 1.01101 0.94855 0.97169 0.92612 0.92788 0.92634 0.91391 0.91413 0.86731 0.85668 0.92587 0.92449 0.90764 0.93719 0.92097 0.93865 0.92682 0.86035 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.08 -0.87 6.07 -27.88 -0.17 -1.04 16 3 C -0.10 -1.35 5.13 -104.62 -0.54 -1.89 16 4 C -0.12 -1.86 9.70 -39.58 -0.38 -2.25 16 5 C -0.09 -1.62 9.35 -39.58 -0.37 -1.99 16 6 C -0.07 -1.22 5.01 -104.62 -0.52 -1.75 16 7 C 0.13 2.77 2.58 -27.84 -0.07 2.70 16 8 H 0.08 1.91 7.00 -51.93 -0.36 1.55 16 9 C -0.13 -2.37 5.40 -26.59 -0.14 -2.52 16 10 C -0.11 -2.05 5.78 -26.54 -0.15 -2.20 16 11 C -0.13 -2.59 5.59 -26.59 -0.15 -2.74 16 12 C 0.17 4.07 2.65 -27.83 -0.07 4.00 16 13 H 0.06 1.41 7.57 -51.93 -0.39 1.01 16 14 C -0.55 -14.92 7.17 -34.44 -0.25 -15.17 16 15 H 0.07 2.19 7.12 -52.49 -0.37 1.81 16 16 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 17 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 18 Si 0.86 21.90 26.99 -169.99 -4.59 17.32 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 21 H -0.22 -5.37 5.31 56.52 0.30 -5.07 16 22 O -0.39 -8.86 6.19 -35.23 -0.22 -9.07 16 23 C -0.11 -1.87 9.68 -39.59 -0.38 -2.26 16 24 C -0.12 -1.79 9.70 -39.58 -0.38 -2.17 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 2.19 7.63 -52.48 -0.40 1.79 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.52 6.85 -51.93 -0.36 1.17 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 40 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -29.89 315.79 -9.21 -39.10 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.61 Total: 2.06 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -3.32 Total: -27.93 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.77 Total: -26.24 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.22 Total: -9.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.89 -9.21 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383662920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.884 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds