Wall clock time and date at job start Mon Mar 30 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38239 * 119.99397 * 179.74382 * 4 3 2 6 6 C 1.38235 * 120.00172 * 0.55065 * 5 4 3 7 7 C 1.50701 * 119.99779 * 179.72823 * 6 5 4 8 8 H 1.08999 * 109.47389 * 204.97906 * 7 6 5 9 9 C 1.53086 * 109.48186 * 84.95545 * 7 6 5 10 10 C 1.53180 * 109.16036 * 182.41765 * 9 7 6 11 11 C 1.53183 * 109.04690 * 56.96232 * 10 9 7 12 12 C 1.53087 * 109.16206 * 303.02832 * 11 10 9 13 13 H 1.09003 * 109.49359 * 177.59888 * 12 11 10 14 14 C 1.50706 * 109.47707 * 297.62303 * 12 11 10 15 15 H 1.07999 * 120.00356 * 359.94522 * 14 12 11 16 16 C 1.37878 * 119.99825 * 179.97438 * 14 12 11 17 17 N 1.31521 * 120.00036 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 120.00103 * 359.97438 * 16 14 12 19 19 H 1.48499 * 109.46732 * 90.00604 * 18 16 14 20 20 H 1.48497 * 109.47354 * 210.00145 * 18 16 14 21 21 H 1.48495 * 109.47070 * 330.00344 * 18 16 14 22 22 O 1.42900 * 109.47930 * 324.99403 * 7 6 5 23 23 C 1.38232 * 119.99913 * 359.70277 * 6 5 4 24 24 C 1.38233 * 119.99928 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 30 30 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.99418 * 180.27454 * 5 4 3 32 32 H 1.09002 * 109.52378 * 302.31007 * 9 7 6 33 33 H 1.08994 * 109.52338 * 62.49908 * 9 7 6 34 34 H 1.08991 * 109.53938 * 297.09670 * 10 9 7 35 35 H 1.08998 * 109.54664 * 176.83209 * 10 9 7 36 36 H 1.08996 * 109.52125 * 183.11861 * 11 10 9 37 37 H 1.09000 * 109.57080 * 62.96270 * 11 10 9 38 38 H 0.97001 * 119.99727 * 179.97438 * 17 16 14 39 39 H 1.08002 * 119.99819 * 180.02562 * 23 6 5 40 40 H 1.08003 * 119.99863 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7238 3.3757 -1.1970 6 6 2.9547 4.0272 0.0002 7 6 3.4573 5.4479 0.0001 8 1 3.9879 5.6456 0.9315 9 6 2.2723 6.4087 -0.1264 10 6 2.7955 7.8471 -0.1865 11 6 3.7750 7.9743 -1.3574 12 6 4.9019 6.9529 -1.1830 13 1 5.5792 7.0094 -2.0352 14 6 5.6615 7.2539 0.0833 15 1 5.3707 8.0903 0.7016 16 6 6.7281 6.4619 0.4522 17 7 7.3906 6.7242 1.5576 18 14 7.2312 5.0152 -0.6172 19 1 8.2313 5.4645 -1.6189 20 1 7.8257 3.9535 0.2339 21 1 6.0367 4.4779 -1.3169 22 8 4.3446 5.6394 -1.1036 23 6 2.7239 3.3756 1.1972 24 6 2.2628 2.0724 1.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0926 1.5599 -2.1324 31 1 2.9038 3.8848 -2.1324 32 1 1.7174 6.1848 -1.0375 33 1 1.6173 6.2950 0.7373 34 1 3.3077 8.0879 0.7450 35 1 1.9611 8.5329 -0.3331 36 1 4.1944 8.9802 -1.3738 37 1 3.2513 7.7826 -2.2939 38 1 8.1408 6.1668 1.8173 39 1 2.9039 3.8847 2.1326 40 1 2.0829 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383662920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:23 Heat of formation + Delta-G solvation = -57.154607 kcal Electronic energy + Delta-G solvation = -19926.510354 eV Core-core repulsion = 17090.521706 eV Total energy + Delta-G solvation = -2835.988648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88676 -39.57763 -35.49168 -34.48523 -34.26562 -32.42885 -31.77836 -29.76046 -27.69449 -25.55779 -24.01979 -23.55367 -23.27381 -21.38060 -20.61598 -18.78139 -17.64879 -16.88643 -16.64791 -16.23814 -15.71860 -15.58502 -15.48987 -14.82988 -14.62895 -14.46130 -14.31812 -14.06709 -14.06204 -13.51926 -13.46626 -13.03458 -12.78522 -12.54361 -12.36856 -12.11174 -11.93588 -11.85918 -11.75378 -11.60123 -11.56769 -11.28482 -10.80676 -10.64879 -9.86505 -9.77677 -9.27334 -8.33660 -6.42971 0.44405 0.54871 1.33233 1.39482 1.68812 2.41412 2.82733 3.00334 3.35112 3.87227 3.99026 4.01700 4.14306 4.20991 4.22191 4.34747 4.43824 4.48046 4.56846 4.63865 4.68773 4.76499 4.77161 4.90575 4.91747 5.09822 5.11789 5.14440 5.19884 5.22637 5.26814 5.29981 5.41233 5.42557 5.46868 5.60062 5.67971 5.74995 5.84169 6.11913 6.17072 6.66139 6.83937 7.33346 8.80376 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.006706 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.586224 B = 4174.648931 C = 4770.999995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.124 4.124 5 C -0.107 4.107 6 C -0.093 4.093 7 C 0.135 3.865 8 H 0.039 0.961 9 C -0.124 4.124 10 C -0.109 4.109 11 C -0.127 4.127 12 C 0.171 3.829 13 H 0.060 0.940 14 C -0.539 4.539 15 H 0.041 0.959 16 C 0.035 3.965 17 N -0.939 5.939 18 Si 0.915 3.085 19 H -0.280 1.280 20 H -0.303 1.303 21 H -0.206 1.206 22 O -0.392 6.392 23 C -0.127 4.127 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.263 0.737 39 H 0.118 0.882 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 -11.350 -4.815 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.142 4.142 5 C -0.125 4.125 6 C -0.093 4.093 7 C 0.077 3.923 8 H 0.057 0.943 9 C -0.162 4.162 10 C -0.146 4.146 11 C -0.165 4.165 12 C 0.115 3.885 13 H 0.077 0.923 14 C -0.576 4.576 15 H 0.060 0.940 16 C -0.165 4.165 17 N -0.579 5.579 18 Si 0.740 3.260 19 H -0.206 1.206 20 H -0.230 1.230 21 H -0.128 1.128 22 O -0.313 6.313 23 C -0.145 4.145 24 C -0.140 4.140 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.562 -11.535 -4.856 19.202 hybrid contribution 1.105 0.253 0.361 1.190 sum -13.458 -11.282 -4.495 18.127 Atomic orbital electron populations 1.21723 0.93901 1.02451 1.01912 1.20572 0.96764 0.90828 1.03620 1.20217 0.98743 0.97482 0.92640 1.21265 1.00030 0.94195 0.98721 1.21080 0.98379 0.95372 0.97629 1.19903 0.99680 0.95253 0.94428 1.20498 0.89849 0.91005 0.90962 0.94333 1.21981 0.96951 0.94922 1.02336 1.21448 0.98317 0.96362 0.98504 1.21915 0.96978 0.99316 0.98314 1.20106 0.91807 0.81130 0.95470 0.92254 1.21657 1.13723 1.13922 1.08308 0.94029 1.25683 0.95551 0.99652 0.95578 1.70072 1.21602 1.40896 1.25336 0.86316 0.79966 0.79956 0.79785 1.20605 1.23021 1.12771 1.87967 1.61605 1.33516 1.48208 1.21115 1.00408 0.95800 0.97180 1.21183 1.00056 0.93910 0.98822 0.92965 0.90855 0.92906 0.90274 0.90193 0.84131 0.86187 0.90975 0.91008 0.93808 0.90398 0.92010 0.91231 0.92775 0.86435 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.08 -1.41 6.07 29.85 0.18 -1.23 16 3 C -0.09 -2.26 5.13 -19.86 -0.10 -2.36 16 4 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 5 C -0.11 -3.54 9.35 22.27 0.21 -3.33 16 6 C -0.09 -3.41 5.01 -19.87 -0.10 -3.51 16 7 C 0.13 5.62 2.58 29.88 0.08 5.70 16 8 H 0.04 1.92 7.00 -2.39 -0.02 1.90 16 9 C -0.12 -4.36 5.40 30.68 0.17 -4.19 16 10 C -0.11 -3.95 5.78 30.72 0.18 -3.78 16 11 C -0.13 -4.91 5.59 30.68 0.17 -4.74 16 12 C 0.17 7.99 2.65 29.88 0.08 8.07 16 13 H 0.06 2.77 7.57 -2.39 -0.02 2.75 16 14 C -0.54 -30.22 7.17 25.60 0.18 -30.04 16 15 H 0.04 2.56 7.12 -2.91 -0.02 2.54 16 16 C 0.03 2.03 5.47 84.65 0.46 2.50 16 17 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 18 Si 0.91 46.25 26.99 68.60 1.85 48.11 16 19 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 20 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 21 H -0.21 -10.01 5.31 99.48 0.53 -9.48 16 22 O -0.39 -17.87 6.19 -148.98 -0.92 -18.79 16 23 C -0.13 -4.23 9.68 22.27 0.22 -4.01 16 24 C -0.12 -3.31 9.70 22.27 0.22 -3.10 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 29 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.12 4.02 7.63 -2.91 -0.02 4.00 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 1.84 6.85 -2.39 -0.02 1.82 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 38 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -66.17 315.79 4.91 -61.27 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.81 Total: 16.82 kcal Atomic # 6 Polarization: -51.45 SS G_CDS: 2.87 Total: -48.58 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.30 Total: -58.82 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.92 Total: -18.79 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.85 Total: 48.11 kcal Total: -66.17 4.91 -61.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383662920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.112 kcal (2) G-P(sol) polarization free energy of solvation -66.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds