Wall clock time and date at job start Mon Mar 30 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47377 * 2 1 4 4 C 1.38228 * 120.00195 * 270.21326 * 3 2 1 5 5 C 1.38238 * 120.00114 * 180.26174 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.50218 * 5 4 3 7 7 C 1.50702 * 120.00257 * 180.25732 * 6 5 4 8 8 H 1.09002 * 109.47838 * 340.00623 * 7 6 5 9 9 C 1.53095 * 109.47690 * 100.02417 * 7 6 5 10 10 C 1.53176 * 109.16114 * 177.59477 * 9 7 6 11 11 C 1.53181 * 109.03760 * 303.02295 * 10 9 7 12 12 C 1.53088 * 109.16292 * 56.98079 * 11 10 9 13 13 H 1.08994 * 109.48467 * 62.37793 * 12 11 10 14 14 C 1.50704 * 109.47853 * 182.39935 * 12 11 10 15 15 H 1.08001 * 120.00013 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99836 * 179.97438 * 14 12 11 17 17 N 1.31514 * 119.99820 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00021 * 0.02562 * 16 14 12 19 19 H 1.48494 * 109.47420 * 89.99540 * 18 16 14 20 20 H 1.48501 * 109.47141 * 209.99872 * 18 16 14 21 21 H 1.48503 * 109.46890 * 329.99496 * 18 16 14 22 22 O 1.42895 * 109.48700 * 219.98002 * 7 6 5 23 23 C 1.38235 * 120.00220 * 0.28720 * 6 5 4 24 24 C 1.38234 * 119.99720 * 90.00111 * 3 2 1 25 25 H 1.08997 * 109.47613 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47168 * 300.00000 * 1 2 3 27 27 H 1.09000 * 109.46991 * 59.99479 * 1 2 3 28 28 H 1.09010 * 109.46864 * 240.00204 * 2 1 3 29 29 H 1.09000 * 109.46991 * 120.00520 * 2 1 3 30 30 H 1.08004 * 120.00270 * 0.03576 * 4 3 2 31 31 H 1.08002 * 120.00519 * 179.78838 * 5 4 3 32 32 H 1.09000 * 109.52518 * 297.49952 * 9 7 6 33 33 H 1.08995 * 109.52407 * 57.69213 * 9 7 6 34 34 H 1.09002 * 109.54494 * 62.88848 * 10 9 7 35 35 H 1.08998 * 109.54815 * 183.06196 * 10 9 7 36 36 H 1.09003 * 109.52412 * 176.88827 * 11 10 9 37 37 H 1.08994 * 109.51761 * 297.01051 * 11 10 9 38 38 H 0.97003 * 119.99793 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.00471 * 179.97438 * 23 6 5 40 40 H 1.08001 * 120.00294 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2586 2.0739 -1.1971 5 6 2.7246 3.3754 -1.1971 6 6 2.9545 4.0271 0.0001 7 6 3.4570 5.4479 0.0002 8 1 3.9099 5.6733 -0.9653 9 6 2.2871 6.4031 0.2509 10 6 2.8149 7.8399 0.3094 11 6 3.8866 7.9345 1.3998 12 6 4.9946 6.9202 1.1047 13 1 5.4678 7.1650 0.1538 14 6 6.0238 6.9659 2.2046 15 1 5.9007 7.6500 3.0312 16 6 7.1226 6.1345 2.1556 17 7 8.0210 6.1748 3.1152 18 14 7.3359 4.9518 0.7255 19 1 8.1023 5.6182 -0.3579 20 1 8.0733 3.7475 1.1849 21 1 6.0016 4.5496 0.2126 22 8 4.4315 5.6088 1.0329 23 6 2.7242 3.3754 1.1973 24 6 2.2628 2.0723 1.1972 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0747 1.5662 -2.1324 31 1 2.9046 3.8846 -2.1323 32 1 1.5637 6.3135 -0.5594 33 1 1.8083 6.1521 1.1973 34 1 3.2497 8.1082 -0.6534 35 1 1.9955 8.5201 0.5417 36 1 4.3069 8.9401 1.4112 37 1 3.4398 7.7155 2.3695 38 1 8.7942 5.5901 3.0806 39 1 2.9042 3.8844 2.1326 40 1 2.0832 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383662922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:29 Heat of formation + Delta-G solvation = -42.591038 kcal Electronic energy + Delta-G solvation = -19686.380025 eV Core-core repulsion = 16851.022900 eV Total energy + Delta-G solvation = -2835.357125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58529 -38.10965 -34.39966 -32.89782 -32.57364 -31.00571 -30.65836 -28.58183 -25.89062 -24.35780 -22.62274 -22.43783 -21.51659 -20.19652 -19.35802 -16.88197 -16.21070 -15.64659 -15.24341 -14.90505 -14.46876 -14.11823 -13.87683 -13.71276 -13.50176 -13.33257 -13.00375 -12.77790 -12.39924 -12.29562 -12.02826 -11.62850 -11.27212 -11.15460 -11.00309 -10.77612 -10.72378 -10.52638 -10.47956 -9.98829 -9.89759 -9.59488 -9.10153 -8.64198 -8.55012 -8.40404 -7.96585 -6.10159 -4.18237 1.57047 1.68902 3.40338 3.48511 3.71783 3.98476 4.55723 4.64621 4.80548 4.90531 5.18572 5.21500 5.25848 5.31165 5.40601 5.42502 5.51556 5.55819 5.62534 5.71894 5.76204 5.84168 5.92048 5.97099 6.03795 6.07377 6.18108 6.27570 6.30459 6.41999 6.48110 6.57940 6.67050 6.70904 6.74289 6.83125 7.00964 7.21827 7.28153 7.65429 8.43829 8.55590 8.92882 9.54465 10.99981 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.006420 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.257595 B = 4360.060325 C = 5112.153643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.123 4.123 5 C -0.115 4.115 6 C -0.068 4.068 7 C 0.119 3.881 8 H 0.050 0.950 9 C -0.137 4.137 10 C -0.123 4.123 11 C -0.134 4.134 12 C 0.184 3.816 13 H 0.012 0.988 14 C -0.515 4.515 15 H 0.079 0.921 16 C 0.085 3.915 17 N -0.891 5.891 18 Si 0.869 3.131 19 H -0.288 1.288 20 H -0.293 1.293 21 H -0.221 1.221 22 O -0.367 6.367 23 C -0.086 4.086 24 C -0.122 4.122 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 -7.871 -8.521 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.069 4.069 7 C 0.060 3.940 8 H 0.067 0.933 9 C -0.174 4.174 10 C -0.160 4.160 11 C -0.171 4.171 12 C 0.129 3.871 13 H 0.029 0.971 14 C -0.552 4.552 15 H 0.097 0.903 16 C -0.119 4.119 17 N -0.528 5.528 18 Si 0.696 3.304 19 H -0.215 1.215 20 H -0.220 1.220 21 H -0.144 1.144 22 O -0.288 6.288 23 C -0.104 4.104 24 C -0.140 4.140 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.146 -8.081 -8.323 18.295 hybrid contribution 0.296 -0.359 -0.773 0.903 sum -13.850 -8.440 -9.096 18.596 Atomic orbital electron populations 1.21740 0.95010 1.01309 1.02194 1.20501 0.95932 0.93038 1.02523 1.19810 1.00189 0.95975 0.93354 1.20844 1.01295 0.94807 0.97198 1.20932 1.00213 0.94784 0.97353 1.19827 0.98144 0.95619 0.93262 1.20661 0.89973 0.90061 0.93276 0.93260 1.22112 0.97825 0.95631 1.01879 1.21658 0.98846 0.95738 0.99771 1.22059 0.96602 1.00567 0.97921 1.20165 0.90532 0.79641 0.96775 0.97060 1.20923 1.02416 1.22923 1.08937 0.90274 1.25037 0.94962 0.95874 0.96061 1.69931 1.11521 1.38542 1.32827 0.87058 0.80170 0.80535 0.82651 1.21456 1.22003 1.14359 1.88465 1.53783 1.34364 1.52178 1.21107 0.96413 0.94199 0.98667 1.21025 1.00651 0.95088 0.97263 0.92712 0.92550 0.92682 0.91380 0.91236 0.86594 0.86448 0.92321 0.91396 0.92604 0.92608 0.91940 0.91903 0.92529 0.85146 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.08 -0.85 6.06 -27.89 -0.17 -1.02 16 3 C -0.09 -1.25 5.13 -104.63 -0.54 -1.79 16 4 C -0.12 -1.67 9.70 -39.59 -0.38 -2.05 16 5 C -0.11 -1.74 9.67 -39.58 -0.38 -2.12 16 6 C -0.07 -1.20 4.97 -104.62 -0.52 -1.72 16 7 C 0.12 2.25 2.67 -27.83 -0.07 2.17 16 8 H 0.05 0.92 8.00 -51.93 -0.42 0.51 16 9 C -0.14 -2.23 5.40 -26.59 -0.14 -2.37 16 10 C -0.12 -2.01 6.03 -26.55 -0.16 -2.17 16 11 C -0.13 -2.69 5.36 -26.59 -0.14 -2.83 16 12 C 0.18 4.42 1.99 -27.84 -0.06 4.36 16 13 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 14 C -0.52 -14.75 9.38 -34.44 -0.32 -15.07 16 15 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 16 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 17 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 18 Si 0.87 22.40 26.99 -169.99 -4.59 17.81 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 21 H -0.22 -5.52 5.16 56.52 0.29 -5.23 16 22 O -0.37 -8.57 6.27 -35.23 -0.22 -8.79 16 23 C -0.09 -1.49 9.36 -39.58 -0.37 -1.86 16 24 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.13 2.39 7.78 -52.49 -0.41 1.98 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -31.10 320.62 -9.37 -40.47 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.79 Total: -0.31 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.38 Total: -27.17 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.22 Total: -8.79 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.59 Total: 17.81 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.10 -9.37 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383662922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.118 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds