Wall clock time and date at job start Mon Mar 30 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47377 * 2 1 4 4 C 1.38228 * 120.00195 * 270.21326 * 3 2 1 5 5 C 1.38238 * 120.00114 * 180.26174 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.50218 * 5 4 3 7 7 C 1.50702 * 120.00257 * 180.25732 * 6 5 4 8 8 H 1.09002 * 109.47838 * 340.00623 * 7 6 5 9 9 C 1.53095 * 109.47690 * 100.02417 * 7 6 5 10 10 C 1.53176 * 109.16114 * 177.59477 * 9 7 6 11 11 C 1.53181 * 109.03760 * 303.02295 * 10 9 7 12 12 C 1.53088 * 109.16292 * 56.98079 * 11 10 9 13 13 H 1.08994 * 109.48467 * 62.37793 * 12 11 10 14 14 C 1.50704 * 109.47853 * 182.39935 * 12 11 10 15 15 H 1.08001 * 120.00013 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99836 * 179.97438 * 14 12 11 17 17 N 1.31514 * 119.99820 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00021 * 0.02562 * 16 14 12 19 19 H 1.48494 * 109.47420 * 89.99540 * 18 16 14 20 20 H 1.48501 * 109.47141 * 209.99872 * 18 16 14 21 21 H 1.48503 * 109.46890 * 329.99496 * 18 16 14 22 22 O 1.42895 * 109.48700 * 219.98002 * 7 6 5 23 23 C 1.38235 * 120.00220 * 0.28720 * 6 5 4 24 24 C 1.38234 * 119.99720 * 90.00111 * 3 2 1 25 25 H 1.08997 * 109.47613 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47168 * 300.00000 * 1 2 3 27 27 H 1.09000 * 109.46991 * 59.99479 * 1 2 3 28 28 H 1.09010 * 109.46864 * 240.00204 * 2 1 3 29 29 H 1.09000 * 109.46991 * 120.00520 * 2 1 3 30 30 H 1.08004 * 120.00270 * 0.03576 * 4 3 2 31 31 H 1.08002 * 120.00519 * 179.78838 * 5 4 3 32 32 H 1.09000 * 109.52518 * 297.49952 * 9 7 6 33 33 H 1.08995 * 109.52407 * 57.69213 * 9 7 6 34 34 H 1.09002 * 109.54494 * 62.88848 * 10 9 7 35 35 H 1.08998 * 109.54815 * 183.06196 * 10 9 7 36 36 H 1.09003 * 109.52412 * 176.88827 * 11 10 9 37 37 H 1.08994 * 109.51761 * 297.01051 * 11 10 9 38 38 H 0.97003 * 119.99793 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.00471 * 179.97438 * 23 6 5 40 40 H 1.08001 * 120.00294 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2586 2.0739 -1.1971 5 6 2.7246 3.3754 -1.1971 6 6 2.9545 4.0271 0.0001 7 6 3.4570 5.4479 0.0002 8 1 3.9099 5.6733 -0.9653 9 6 2.2871 6.4031 0.2509 10 6 2.8149 7.8399 0.3094 11 6 3.8866 7.9345 1.3998 12 6 4.9946 6.9202 1.1047 13 1 5.4678 7.1650 0.1538 14 6 6.0238 6.9659 2.2046 15 1 5.9007 7.6500 3.0312 16 6 7.1226 6.1345 2.1556 17 7 8.0210 6.1748 3.1152 18 14 7.3359 4.9518 0.7255 19 1 8.1023 5.6182 -0.3579 20 1 8.0733 3.7475 1.1849 21 1 6.0016 4.5496 0.2126 22 8 4.4315 5.6088 1.0329 23 6 2.7242 3.3754 1.1973 24 6 2.2628 2.0723 1.1972 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0747 1.5662 -2.1324 31 1 2.9046 3.8846 -2.1323 32 1 1.5637 6.3135 -0.5594 33 1 1.8083 6.1521 1.1973 34 1 3.2497 8.1082 -0.6534 35 1 1.9955 8.5201 0.5417 36 1 4.3069 8.9401 1.4112 37 1 3.4398 7.7155 2.3695 38 1 8.7942 5.5901 3.0806 39 1 2.9042 3.8844 2.1326 40 1 2.0832 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383662922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:29 Heat of formation + Delta-G solvation = -58.998635 kcal Electronic energy + Delta-G solvation = -19687.091512 eV Core-core repulsion = 16851.022900 eV Total energy + Delta-G solvation = -2836.068611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88483 -39.54344 -35.60182 -34.66711 -34.30414 -32.50185 -31.79631 -29.92792 -27.62696 -25.63431 -23.92353 -23.59494 -23.04423 -21.39360 -20.88630 -19.01107 -17.58950 -17.06672 -16.74273 -16.15931 -15.97505 -15.61994 -15.39927 -14.93203 -14.72740 -14.47984 -14.30536 -14.16915 -14.06266 -13.57920 -13.25207 -12.96488 -12.81819 -12.49478 -12.42540 -12.12520 -12.04238 -11.89724 -11.80962 -11.63279 -11.56070 -11.29444 -10.99287 -10.73732 -9.94287 -9.78807 -9.32202 -8.37877 -6.49795 0.41835 0.53786 1.32964 1.38000 1.65723 2.40387 2.74845 2.92826 3.43598 3.84821 3.96521 3.99014 4.06872 4.08162 4.19630 4.25823 4.38205 4.39196 4.45202 4.55272 4.63599 4.70132 4.74990 4.78033 4.91574 5.01080 5.07040 5.09836 5.11227 5.17128 5.19607 5.22552 5.26589 5.41326 5.51440 5.52925 5.60645 5.74408 5.79486 6.15031 6.21712 6.54464 6.89284 7.27674 8.76163 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.006420 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.257595 B = 4360.060325 C = 5112.153643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.089 4.089 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.093 4.093 7 C 0.111 3.889 8 H 0.055 0.945 9 C -0.130 4.130 10 C -0.114 4.114 11 C -0.131 4.131 12 C 0.187 3.813 13 H 0.013 0.987 14 C -0.526 4.526 15 H 0.042 0.958 16 C 0.031 3.969 17 N -0.939 5.939 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.298 1.298 21 H -0.209 1.209 22 O -0.392 6.392 23 C -0.110 4.110 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.267 0.733 39 H 0.104 0.896 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.509 -9.559 -11.563 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.138 4.138 5 C -0.136 4.136 6 C -0.094 4.094 7 C 0.053 3.947 8 H 0.073 0.927 9 C -0.168 4.168 10 C -0.152 4.152 11 C -0.169 4.169 12 C 0.132 3.868 13 H 0.031 0.969 14 C -0.563 4.563 15 H 0.060 0.940 16 C -0.169 4.169 17 N -0.578 5.578 18 Si 0.757 3.243 19 H -0.203 1.203 20 H -0.225 1.225 21 H -0.131 1.131 22 O -0.313 6.313 23 C -0.129 4.129 24 C -0.148 4.148 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.166 0.834 31 H 0.155 0.845 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.329 -9.758 -11.372 22.163 hybrid contribution 0.891 0.139 0.217 0.928 sum -15.438 -9.619 -11.155 21.338 Atomic orbital electron populations 1.21720 0.93885 1.02453 1.01920 1.20579 0.96783 0.90973 1.03579 1.20213 0.98630 0.97379 0.92706 1.21241 0.99812 0.94213 0.98536 1.21182 0.99787 0.95487 0.97095 1.19829 1.00023 0.95209 0.94289 1.20942 0.89810 0.92020 0.91894 0.92695 1.22067 0.97356 0.94734 1.02605 1.21626 0.98320 0.96549 0.98686 1.21969 0.96734 0.99338 0.98881 1.19926 0.90908 0.81217 0.94796 0.96940 1.21246 1.04204 1.21860 1.09013 0.94019 1.25883 0.94749 0.97693 0.98594 1.70058 1.12506 1.40153 1.35087 0.86074 0.80436 0.78117 0.79689 1.20316 1.22488 1.13142 1.88325 1.55424 1.33335 1.54169 1.21038 0.98433 0.95528 0.97867 1.21213 1.00478 0.94291 0.98813 0.90910 0.93310 0.92503 0.89773 0.90814 0.83399 0.84463 0.89206 0.92317 0.91211 0.89762 0.91791 0.93414 0.92402 0.87754 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.08 -1.40 6.06 29.85 0.18 -1.21 16 3 C -0.09 -2.13 5.13 -19.87 -0.10 -2.23 16 4 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 5 C -0.12 -3.21 9.67 22.27 0.22 -2.99 16 6 C -0.09 -3.14 4.97 -19.87 -0.10 -3.24 16 7 C 0.11 4.04 2.67 29.88 0.08 4.12 16 8 H 0.06 1.92 8.00 -2.39 -0.02 1.90 16 9 C -0.13 -3.95 5.40 30.68 0.17 -3.79 16 10 C -0.11 -3.46 6.03 30.71 0.19 -3.28 16 11 C -0.13 -5.27 5.36 30.68 0.16 -5.10 16 12 C 0.19 9.07 1.99 29.88 0.06 9.13 16 13 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 14 C -0.53 -31.36 9.38 25.60 0.24 -31.12 16 15 H 0.04 2.71 7.99 -2.91 -0.02 2.68 16 16 C 0.03 1.85 5.47 84.65 0.46 2.32 16 17 N -0.94 -60.51 13.96 21.45 0.30 -60.21 16 18 Si 0.93 47.22 26.99 68.60 1.85 49.07 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 21 H -0.21 -10.13 5.16 99.48 0.51 -9.62 16 22 O -0.39 -18.31 6.27 -148.98 -0.93 -19.24 16 23 C -0.11 -3.82 9.36 22.27 0.21 -3.61 16 24 C -0.13 -3.70 9.70 22.27 0.22 -3.48 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 29 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.14 3.11 8.04 -2.91 -0.02 3.09 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 39 H 0.10 4.03 7.78 -2.91 -0.02 4.01 16 40 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -69.95 320.62 4.91 -65.04 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.79 Total: 13.79 kcal Atomic # 6 Polarization: -51.34 SS G_CDS: 2.91 Total: -48.44 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.30 Total: -60.21 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.93 Total: -19.24 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.85 Total: 49.07 kcal Total: -69.95 4.91 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383662922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.040 kcal (2) G-P(sol) polarization free energy of solvation -69.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds