Wall clock time and date at job start Mon Mar 30 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38314 * 119.90159 * 2 1 4 4 C 1.38617 * 119.99928 * 179.97438 * 3 2 1 5 5 N 1.40016 * 120.09625 * 180.02562 * 4 3 2 6 6 C 1.39517 * 119.80947 * 359.97438 * 4 3 2 7 7 N 1.40016 * 120.09960 * 179.97438 * 6 4 3 8 8 C 1.46898 * 111.00131 * 238.12158 * 7 6 4 9 9 C 1.50702 * 109.46966 * 163.94790 * 8 7 6 10 10 H 1.07999 * 119.99808 * 355.91899 * 9 8 7 11 11 C 1.37877 * 119.99952 * 175.92372 * 9 8 7 12 12 N 1.31519 * 119.99851 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00091 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47272 * 90.00239 * 13 11 9 15 15 H 1.48503 * 109.47292 * 209.99912 * 13 11 9 16 16 H 1.48498 * 109.47128 * 330.00024 * 13 11 9 17 17 C 1.46901 * 110.99745 * 114.16645 * 7 6 4 18 18 C 1.53001 * 117.50013 * 355.73038 * 17 7 6 19 19 C 1.52996 * 117.49952 * 287.10748 * 17 7 6 20 20 C 1.38624 * 119.80263 * 0.02562 * 6 4 3 21 21 C 1.38210 * 119.90606 * 179.71924 * 2 1 3 22 22 C 1.50706 * 119.90095 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47042 * 90.00445 * 1 2 3 24 24 H 1.09001 * 109.46841 * 329.99962 * 1 2 3 25 25 H 1.08995 * 109.46886 * 210.00331 * 1 2 3 26 26 H 1.08005 * 119.99869 * 359.95292 * 3 2 1 27 27 H 0.96995 * 120.00259 * 359.97438 * 5 4 3 28 28 H 0.97003 * 119.99648 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.47017 * 283.94825 * 8 7 6 30 30 H 1.09004 * 109.47124 * 43.94327 * 8 7 6 31 31 H 0.96994 * 119.99999 * 179.97438 * 12 11 9 32 32 H 1.09000 * 115.54713 * 141.44214 * 17 7 6 33 33 H 1.08999 * 117.50042 * 0.02562 * 18 17 7 34 34 H 1.08997 * 117.49455 * 145.02050 * 18 17 7 35 35 H 1.08997 * 117.50382 * 214.98004 * 19 17 7 36 36 H 1.09000 * 117.49964 * 0.02562 * 19 17 7 37 37 H 1.07999 * 119.99471 * 179.97438 * 20 6 4 38 38 H 1.08998 * 109.47079 * 89.99655 * 22 21 2 39 39 H 1.08995 * 109.46793 * 210.00046 * 22 21 2 40 40 H 1.08995 * 109.46829 * 329.99556 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1990 0.0000 4 6 3.5827 1.2014 0.0005 5 7 4.2828 2.4140 0.0011 6 6 4.2783 -0.0080 0.0016 7 7 5.6785 -0.0127 0.0016 8 6 6.2025 -0.7398 -1.1623 9 6 7.6584 -0.4004 -1.3527 10 1 8.1287 0.3361 -0.7180 11 6 8.3900 -1.0301 -2.3373 12 7 7.8173 -1.9273 -3.1098 13 14 10.1944 -0.6090 -2.5738 14 1 11.0263 -1.5039 -1.7299 15 1 10.5623 -0.7914 -4.0009 16 1 10.4291 0.8031 -2.1787 17 6 6.2030 -0.5748 1.2534 18 6 5.1914 -0.9468 2.3393 19 6 6.0863 0.2815 2.5159 20 6 3.5791 -1.2050 0.0016 21 6 2.1961 -1.1980 0.0059 22 6 1.4382 -2.5006 0.0117 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8899 0.5139 26 1 1.6549 2.1334 -0.0008 27 1 3.7978 3.2540 0.0007 28 1 5.2528 2.4139 0.0011 29 1 6.0979 -1.8123 -0.9980 30 1 5.6429 -0.4523 -2.0524 31 1 8.3318 -2.3700 -3.8027 32 1 7.0873 -1.2040 1.1520 33 1 4.1366 -0.7749 2.1248 34 1 5.4100 -1.8211 2.9525 35 1 6.8935 0.2154 3.2453 36 1 5.6200 1.2618 2.4178 37 1 4.1145 -2.1430 0.0020 38 1 1.2558 -2.8194 -1.0146 39 1 2.0245 -3.2598 0.5293 40 1 0.4861 -2.3647 0.5246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383767149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:15 Heat of formation + Delta-G solvation = 36.207974 kcal Electronic energy + Delta-G solvation = -19912.023553 eV Core-core repulsion = 17112.376161 eV Total energy + Delta-G solvation = -2799.647392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29748 -38.69538 -36.03425 -35.50966 -34.20035 -32.22884 -31.41047 -28.93247 -27.33714 -26.01268 -24.28739 -23.47040 -22.90479 -22.04418 -20.19713 -18.54440 -17.80434 -17.33250 -17.18824 -16.73366 -16.20394 -15.49654 -15.11434 -14.88298 -14.59843 -14.43695 -14.31254 -13.67300 -13.52266 -13.38306 -13.29383 -13.08722 -12.80033 -12.68601 -12.60993 -12.34676 -12.12573 -12.07724 -11.85956 -11.49254 -11.37702 -11.12834 -10.83153 -10.60444 -9.31237 -8.95648 -8.21869 -8.07615 -6.31358 0.53106 0.80501 1.40138 1.41544 1.53290 2.39284 2.93127 2.95971 3.11414 3.21005 3.33715 4.02059 4.05254 4.11262 4.17276 4.34144 4.41847 4.46338 4.69090 4.78643 4.80286 4.81718 4.91179 4.95073 5.03020 5.05036 5.08134 5.18251 5.22234 5.29082 5.30675 5.32540 5.45030 5.67562 5.71923 5.92474 6.08998 6.15967 6.32057 6.62795 6.85294 6.98909 7.22987 7.38690 8.90430 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.006037 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.760243 B = 4636.602553 C = 4886.395342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.050 4.050 3 C -0.202 4.202 4 C 0.223 3.777 5 N -0.862 5.862 6 C -0.004 4.004 7 N -0.464 5.464 8 C 0.227 3.773 9 C -0.519 4.519 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.936 5.936 13 Si 0.971 3.029 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.263 1.263 17 C 0.018 3.982 18 C -0.202 4.202 19 C -0.155 4.155 20 C -0.103 4.103 21 C -0.156 4.156 22 C -0.102 4.102 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.403 0.597 28 H 0.402 0.598 29 H -0.034 1.034 30 H -0.011 1.011 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 5.013 9.455 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.051 4.051 3 C -0.226 4.226 4 C 0.116 3.884 5 N -0.401 5.401 6 C -0.102 4.102 7 N -0.183 5.183 8 C 0.102 3.898 9 C -0.557 4.557 10 H 0.083 0.917 11 C -0.196 4.196 12 N -0.576 5.576 13 Si 0.796 3.204 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.188 1.188 17 C -0.090 4.090 18 C -0.240 4.240 19 C -0.193 4.193 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.159 4.159 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.161 0.839 27 H 0.233 0.767 28 H 0.232 0.768 29 H -0.016 1.016 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.648 5.379 9.255 16.570 hybrid contribution 1.291 -0.758 -0.620 1.620 sum -11.357 4.621 8.635 14.997 Atomic orbital electron populations 1.20873 0.88910 1.03823 1.02971 1.19801 0.97222 0.91289 0.96780 1.20591 0.90873 0.99082 1.12019 1.17797 0.91294 0.85942 0.93388 1.42402 1.09614 1.04108 1.84014 1.18572 0.89159 0.92258 1.10218 1.59382 1.03548 1.53683 1.01709 1.19281 0.94402 0.89648 0.86481 1.21438 0.95219 1.22460 1.16600 0.91721 1.25929 1.03530 0.94783 0.95388 1.70109 1.38441 1.27841 1.21221 0.85356 0.78885 0.78997 0.77200 1.19823 1.20913 1.18772 1.22514 0.99383 1.01689 0.85462 1.23505 0.97483 0.99790 1.03247 1.23003 1.02165 0.95346 0.98743 1.21299 0.94924 0.96806 0.99326 1.19638 0.92322 0.96446 1.07517 1.20721 1.00137 0.93004 1.01989 0.90561 0.90319 0.90083 0.83891 0.76703 0.76839 1.01606 0.99266 0.92747 0.89001 0.88684 0.88373 0.87440 0.89162 0.89131 0.91945 0.92750 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.60 71.24 0.68 -1.34 16 2 C -0.05 -1.38 5.88 -19.85 -0.12 -1.50 16 3 C -0.20 -5.80 9.54 22.38 0.21 -5.58 16 4 C 0.22 7.66 6.78 38.23 0.26 7.92 16 5 N -0.86 -25.63 9.09 -50.96 -0.46 -26.09 16 6 C 0.00 -0.16 3.36 38.23 0.13 -0.03 16 7 N -0.46 -20.85 3.78 -675.03 -2.55 -23.40 16 8 C 0.23 12.62 4.13 85.56 0.35 12.98 16 9 C -0.52 -29.93 8.62 25.60 0.22 -29.71 16 10 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 11 C 0.00 0.09 5.46 84.65 0.46 0.55 16 12 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 13 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 C 0.02 0.73 5.56 44.91 0.25 0.98 16 18 C -0.20 -6.81 9.00 30.59 0.28 -6.54 16 19 C -0.15 -5.01 10.35 30.59 0.32 -4.70 16 20 C -0.10 -4.01 6.41 22.38 0.14 -3.87 16 21 C -0.16 -4.96 5.88 -19.85 -0.12 -5.07 16 22 C -0.10 -2.55 9.60 71.24 0.68 -1.87 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 25 H 0.08 1.28 5.92 -2.39 -0.01 1.27 16 26 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 27 H 0.40 9.00 8.85 -92.71 -0.82 8.18 16 28 H 0.40 13.35 8.11 -92.71 -0.75 12.60 16 29 H -0.03 -2.06 7.57 -2.38 -0.02 -2.08 16 30 H -0.01 -0.67 7.97 -2.39 -0.02 -0.69 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.09 4.17 7.60 -2.39 -0.02 4.16 16 33 H 0.09 3.35 5.50 -2.39 -0.01 3.33 16 34 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.09 3.89 7.57 -2.91 -0.02 3.87 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.38 8.08 -2.39 -0.02 1.36 16 40 H 0.09 1.70 5.92 -2.39 -0.01 1.68 16 Total: -1.00 -67.01 323.22 2.53 -64.49 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.52 Total: 33.16 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 3.76 Total: -37.78 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -2.73 Total: -106.79 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.01 2.53 -64.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383767149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.693 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds