Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47018 * 2 1 4 4 C 1.50701 * 109.47126 * 240.00200 * 2 1 3 5 5 C 1.38235 * 119.99808 * 119.99864 * 4 2 1 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 9 9 C 1.38230 * 119.99865 * 299.97609 * 4 2 1 10 10 C 1.52996 * 109.47237 * 119.99818 * 2 1 3 11 11 H 1.09004 * 110.27566 * 180.63726 * 10 2 1 12 12 C 1.54939 * 110.31049 * 302.83702 * 10 2 1 13 13 C 1.55309 * 100.94255 * 155.35787 * 12 10 2 14 14 C 1.54382 * 102.25157 * 325.86716 * 13 12 10 15 15 C 1.52998 * 109.82658 * 261.84330 * 14 13 12 16 16 C 1.50703 * 109.82968 * 140.87110 * 14 13 12 17 17 H 1.08005 * 119.99942 * 0.40973 * 16 14 13 18 18 C 1.37872 * 120.00068 * 180.41263 * 16 14 13 19 19 N 1.31519 * 119.99823 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00320 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47050 * 59.99877 * 20 18 16 22 22 H 1.48498 * 109.47600 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47263 * 300.00052 * 20 18 16 24 24 O 1.43235 * 107.58673 * 21.35525 * 14 13 12 25 25 H 1.08997 * 109.47477 * 299.99874 * 1 2 3 26 26 H 1.09007 * 109.47139 * 60.00188 * 1 2 3 27 27 H 1.08998 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00616 * 359.70324 * 5 4 2 29 29 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.99666 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.99729 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.00371 * 0.02562 * 9 4 2 33 33 H 1.09006 * 111.12354 * 273.27386 * 12 10 2 34 34 H 1.08999 * 111.12669 * 37.43722 * 12 10 2 35 35 H 1.09001 * 110.84906 * 207.67530 * 13 12 10 36 36 H 1.09000 * 111.02313 * 84.13518 * 13 12 10 37 37 H 1.09007 * 109.46777 * 179.58879 * 15 14 13 38 38 H 1.09007 * 109.46906 * 299.58356 * 15 14 13 39 39 H 1.09000 * 109.47380 * 59.58865 * 15 14 13 40 40 H 0.97001 * 119.99995 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8270 -0.0385 -2.1404 6 6 3.2883 -0.6903 -3.2689 7 6 2.9531 -2.0133 -3.4884 8 6 2.1591 -2.6854 -2.5780 9 6 1.6988 -2.0339 -1.4490 10 6 2.0400 -0.7212 1.2492 11 1 3.1299 -0.7190 1.2682 12 6 1.4764 -0.0487 2.5262 13 6 1.5448 -1.2276 3.5350 14 6 1.2500 -2.4466 2.6347 15 6 -0.2245 -2.8366 2.7556 16 6 2.1223 -3.6060 3.0422 17 1 2.8152 -3.4979 3.8636 18 6 2.0358 -4.8047 2.3665 19 7 1.1916 -4.9364 1.3666 20 14 3.1174 -6.2415 2.8711 21 1 2.8322 -6.6040 4.2826 22 1 2.8341 -7.4063 1.9946 23 1 4.5456 -5.8568 2.7378 24 8 1.5435 -2.0686 1.2846 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0840 0.9969 -1.9719 29 1 3.9088 -0.1653 -3.9800 30 1 3.3131 -2.5224 -4.3702 31 1 1.8977 -3.7191 -2.7493 32 1 1.0778 -2.5588 -0.7381 33 1 2.1092 0.7792 2.8461 34 1 0.4483 0.2805 2.3758 35 1 0.7827 -1.1222 4.3071 36 1 2.5370 -1.3047 3.9796 37 1 -0.4278 -3.6928 2.1124 38 1 -0.4474 -3.0982 3.7901 39 1 -0.8487 -1.9967 2.4506 40 1 1.1310 -5.7796 0.8910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383768087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = -29.947918 kcal Electronic energy + Delta-G solvation = -20503.770885 eV Core-core repulsion = 17668.962007 eV Total energy + Delta-G solvation = -2834.808878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.33983 -38.01520 -34.35006 -32.36145 -31.02382 -30.29511 -29.60032 -28.32131 -25.24310 -24.93631 -22.99515 -22.01900 -20.87871 -19.42068 -18.96201 -16.49459 -16.11168 -15.54235 -14.82701 -14.71815 -14.26145 -13.95264 -13.36220 -13.18537 -12.93580 -12.67860 -12.33067 -12.09807 -11.95912 -11.51087 -11.24026 -11.09454 -11.02532 -10.91277 -10.78912 -10.58279 -10.42258 -10.29628 -10.19317 -9.94605 -9.75459 -9.30123 -9.02761 -8.42949 -8.33212 -8.12492 -7.73882 -5.90894 -4.05510 1.89559 2.00620 3.33873 3.38591 3.41603 4.35117 4.46224 4.91477 5.22433 5.30346 5.46751 5.49679 5.51597 5.59672 5.67611 5.80550 5.86568 5.97464 6.04865 6.14925 6.23311 6.26406 6.42594 6.48035 6.54442 6.61595 6.66767 6.71510 6.74639 6.86170 6.93131 6.97925 6.99608 7.15903 7.22678 7.35363 7.48044 7.67545 7.83331 8.14225 8.43090 8.70389 9.11096 9.65224 11.10847 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.008543 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.976769 B = 3276.738733 C = 4300.788592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 H 0.071 0.929 4 C -0.072 4.072 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.133 4.133 8 C -0.124 4.124 9 C -0.076 4.076 10 C 0.086 3.914 11 H 0.050 0.950 12 C -0.157 4.157 13 C -0.141 4.141 14 C 0.230 3.770 15 C -0.137 4.137 16 C -0.533 4.533 17 H 0.054 0.946 18 C 0.084 3.916 19 N -0.859 5.859 20 Si 0.884 3.116 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 O -0.340 6.340 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.155 0.845 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.011 0.989 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 8.821 -5.029 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 H 0.089 0.911 4 C -0.072 4.072 5 C -0.145 4.145 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.142 4.142 9 C -0.093 4.093 10 C 0.027 3.973 11 H 0.068 0.932 12 C -0.195 4.195 13 C -0.179 4.179 14 C 0.192 3.808 15 C -0.195 4.195 16 C -0.571 4.571 17 H 0.073 0.927 18 C -0.121 4.121 19 N -0.496 5.496 20 Si 0.712 3.288 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.204 1.204 24 O -0.260 6.260 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.172 0.828 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.298 8.549 -5.341 10.085 hybrid contribution 0.886 -0.685 0.448 1.207 sum 0.588 7.864 -4.893 9.281 Atomic orbital electron populations 1.21832 0.94335 1.03249 1.00265 1.20305 0.96411 0.97472 0.92562 0.91078 1.19835 0.97333 0.94752 0.95284 1.20980 0.99221 0.99315 0.95028 1.20911 1.01441 0.95168 0.97967 1.21039 0.99650 0.94918 0.99492 1.21212 0.98350 0.99734 0.94921 1.21630 0.98032 0.93683 0.95971 1.22627 0.96708 0.86225 0.91707 0.93242 1.23362 1.01025 0.98163 0.96919 1.23201 1.00982 0.95545 0.98151 1.19593 0.92572 0.90195 0.78420 1.21971 0.96242 1.01151 1.00145 1.21243 1.23108 0.95934 1.16797 0.92735 1.24921 0.94663 0.98084 0.94382 1.69913 1.34735 1.24943 1.20007 0.86820 0.81414 0.82235 0.78368 1.20397 1.21300 1.20360 1.88685 1.84158 1.23890 1.29269 0.92642 0.93752 0.90941 0.87094 0.87148 0.87169 0.86594 0.82773 0.92272 0.90994 0.92453 0.92018 0.89259 0.94847 0.96972 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.54 37.16 0.32 -1.92 16 2 C -0.05 -0.82 2.60 -91.77 -0.24 -1.06 16 3 H 0.07 1.04 7.88 -51.93 -0.41 0.64 16 4 C -0.07 -1.29 4.78 -104.63 -0.50 -1.79 16 5 C -0.13 -2.02 9.67 -39.58 -0.38 -2.40 16 6 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 7 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 8 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 9 C -0.08 -1.49 8.35 -39.59 -0.33 -1.82 16 10 C 0.09 1.70 3.17 -25.71 -0.08 1.62 16 11 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 12 C -0.16 -2.77 6.45 -24.48 -0.16 -2.93 16 13 C -0.14 -2.89 6.07 -24.78 -0.15 -3.04 16 14 C 0.23 5.53 0.82 -91.05 -0.07 5.45 16 15 C -0.14 -3.24 8.51 37.16 0.32 -2.92 16 16 C -0.53 -14.44 8.22 -34.44 -0.28 -14.72 16 17 H 0.05 1.48 7.52 -52.48 -0.39 1.08 16 18 C 0.08 2.30 5.26 -17.82 -0.09 2.20 16 19 N -0.86 -23.69 10.93 55.43 0.61 -23.09 16 20 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 O -0.34 -8.04 6.43 -35.23 -0.23 -8.26 16 25 H 0.05 0.82 6.05 -51.93 -0.31 0.51 16 26 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.07 1.34 6.93 -51.93 -0.36 0.98 16 28 H 0.11 1.49 7.95 -52.49 -0.42 1.07 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.15 3.51 5.76 -52.49 -0.30 3.21 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.19 5.74 -51.93 -0.30 0.89 16 35 H 0.06 1.09 7.82 -51.93 -0.41 0.69 16 36 H 0.06 1.28 7.65 -51.93 -0.40 0.89 16 37 H 0.09 2.33 6.05 -51.92 -0.31 2.01 16 38 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -27.94 313.37 -8.90 -36.84 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.13 Total: 4.50 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: -2.85 Total: -30.90 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.61 Total: -23.09 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.23 Total: -8.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.94 -8.90 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383768087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.893 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds