Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47018 * 2 1 4 4 C 1.50701 * 109.47126 * 240.00200 * 2 1 3 5 5 C 1.38235 * 119.99808 * 119.99864 * 4 2 1 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 9 9 C 1.38230 * 119.99865 * 299.97609 * 4 2 1 10 10 C 1.52996 * 109.47237 * 119.99818 * 2 1 3 11 11 H 1.09004 * 110.27566 * 180.63726 * 10 2 1 12 12 C 1.54939 * 110.31049 * 302.83702 * 10 2 1 13 13 C 1.55309 * 100.94255 * 155.35787 * 12 10 2 14 14 C 1.54382 * 102.25157 * 325.86716 * 13 12 10 15 15 C 1.52998 * 109.82658 * 261.84330 * 14 13 12 16 16 C 1.50703 * 109.82968 * 140.87110 * 14 13 12 17 17 H 1.08005 * 119.99942 * 0.40973 * 16 14 13 18 18 C 1.37872 * 120.00068 * 180.41263 * 16 14 13 19 19 N 1.31519 * 119.99823 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00320 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47050 * 59.99877 * 20 18 16 22 22 H 1.48498 * 109.47600 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47263 * 300.00052 * 20 18 16 24 24 O 1.43235 * 107.58673 * 21.35525 * 14 13 12 25 25 H 1.08997 * 109.47477 * 299.99874 * 1 2 3 26 26 H 1.09007 * 109.47139 * 60.00188 * 1 2 3 27 27 H 1.08998 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00616 * 359.70324 * 5 4 2 29 29 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.99666 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.99729 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.00371 * 0.02562 * 9 4 2 33 33 H 1.09006 * 111.12354 * 273.27386 * 12 10 2 34 34 H 1.08999 * 111.12669 * 37.43722 * 12 10 2 35 35 H 1.09001 * 110.84906 * 207.67530 * 13 12 10 36 36 H 1.09000 * 111.02313 * 84.13518 * 13 12 10 37 37 H 1.09007 * 109.46777 * 179.58879 * 15 14 13 38 38 H 1.09007 * 109.46906 * 299.58356 * 15 14 13 39 39 H 1.09000 * 109.47380 * 59.58865 * 15 14 13 40 40 H 0.97001 * 119.99995 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8270 -0.0385 -2.1404 6 6 3.2883 -0.6903 -3.2689 7 6 2.9531 -2.0133 -3.4884 8 6 2.1591 -2.6854 -2.5780 9 6 1.6988 -2.0339 -1.4490 10 6 2.0400 -0.7212 1.2492 11 1 3.1299 -0.7190 1.2682 12 6 1.4764 -0.0487 2.5262 13 6 1.5448 -1.2276 3.5350 14 6 1.2500 -2.4466 2.6347 15 6 -0.2245 -2.8366 2.7556 16 6 2.1223 -3.6060 3.0422 17 1 2.8152 -3.4979 3.8636 18 6 2.0358 -4.8047 2.3665 19 7 1.1916 -4.9364 1.3666 20 14 3.1174 -6.2415 2.8711 21 1 2.8322 -6.6040 4.2826 22 1 2.8341 -7.4063 1.9946 23 1 4.5456 -5.8568 2.7378 24 8 1.5435 -2.0686 1.2846 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0840 0.9969 -1.9719 29 1 3.9088 -0.1653 -3.9800 30 1 3.3131 -2.5224 -4.3702 31 1 1.8977 -3.7191 -2.7493 32 1 1.0778 -2.5588 -0.7381 33 1 2.1092 0.7792 2.8461 34 1 0.4483 0.2805 2.3758 35 1 0.7827 -1.1222 4.3071 36 1 2.5370 -1.3047 3.9796 37 1 -0.4278 -3.6928 2.1124 38 1 -0.4474 -3.0982 3.7901 39 1 -0.8487 -1.9967 2.4506 40 1 1.1310 -5.7796 0.8910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383768087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = -42.973671 kcal Electronic energy + Delta-G solvation = -20504.335724 eV Core-core repulsion = 17668.962007 eV Total energy + Delta-G solvation = -2835.373717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79666 -39.49538 -35.89593 -34.22332 -32.68537 -31.59486 -31.22693 -29.74700 -27.25160 -26.48610 -24.48416 -23.32978 -22.31096 -21.17484 -20.40853 -18.39604 -17.45210 -17.11326 -16.61032 -16.13644 -15.81845 -15.44225 -15.01951 -14.53338 -14.52405 -14.04672 -13.85498 -13.80785 -13.44325 -13.03782 -12.93191 -12.75214 -12.71349 -12.56086 -12.36447 -12.26587 -11.99620 -11.90006 -11.77180 -11.57083 -11.25243 -10.89550 -10.83531 -10.48548 -9.66003 -9.62675 -9.34547 -7.96672 -6.17858 0.60363 0.69910 1.39365 1.40626 1.46793 2.44786 3.02504 3.17571 3.58686 3.96595 3.97231 4.15292 4.21163 4.28637 4.32122 4.44039 4.54646 4.58281 4.70723 4.75676 4.85564 4.91850 4.96687 4.99927 5.05449 5.10534 5.15204 5.20067 5.30966 5.35099 5.42029 5.45555 5.48704 5.65384 5.70143 5.76483 5.88316 6.02032 6.19991 6.33213 6.42398 6.75011 7.25995 7.57261 9.02094 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.008543 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.976769 B = 3276.738733 C = 4300.788592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 H 0.104 0.896 4 C -0.086 4.086 5 C -0.127 4.127 6 C -0.131 4.131 7 C -0.132 4.132 8 C -0.146 4.146 9 C -0.104 4.104 10 C 0.076 3.924 11 H 0.031 0.969 12 C -0.142 4.142 13 C -0.140 4.140 14 C 0.216 3.784 15 C -0.128 4.128 16 C -0.555 4.555 17 H 0.045 0.955 18 C 0.041 3.959 19 N -0.878 5.878 20 Si 0.936 3.064 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.280 1.280 24 O -0.360 6.360 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 11.310 -5.770 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 H 0.122 0.878 4 C -0.086 4.086 5 C -0.144 4.144 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.164 4.164 9 C -0.122 4.122 10 C 0.017 3.983 11 H 0.049 0.951 12 C -0.179 4.179 13 C -0.178 4.178 14 C 0.178 3.822 15 C -0.185 4.185 16 C -0.593 4.593 17 H 0.063 0.937 18 C -0.162 4.162 19 N -0.515 5.515 20 Si 0.763 3.237 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.206 1.206 24 O -0.280 6.280 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.156 0.844 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.630 11.041 -6.075 12.617 hybrid contribution 0.628 -1.450 0.630 1.701 sum 1.259 9.591 -5.445 11.100 Atomic orbital electron populations 1.21757 0.93918 1.01473 1.01845 1.20318 0.96723 0.98401 0.90652 0.87779 1.20004 0.98109 0.94110 0.96414 1.21356 0.97893 1.00719 0.94464 1.21383 1.00630 0.94754 0.98127 1.21352 0.98510 0.95580 0.99591 1.21311 0.99678 0.99897 0.95515 1.21398 0.99403 0.95076 0.96355 1.22830 0.95824 0.85216 0.94430 0.95139 1.23312 1.02456 0.97657 0.94446 1.23113 1.00815 0.95335 0.98511 1.19637 0.91928 0.90981 0.79677 1.21820 0.96810 1.00531 0.99377 1.21632 1.23425 0.97582 1.16661 0.93664 1.25558 0.95838 1.00244 0.94586 1.70061 1.35723 1.25043 1.20648 0.85986 0.79657 0.79752 0.78317 1.19622 1.21058 1.20606 1.88679 1.84297 1.26420 1.28613 0.91155 0.91962 0.94380 0.83891 0.83390 0.84418 0.87246 0.86889 0.89234 0.89477 0.91128 0.92932 0.92381 0.94744 0.95159 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.54 71.98 0.62 -3.46 16 2 C -0.04 -1.36 2.60 -11.54 -0.03 -1.39 16 3 H 0.10 2.63 7.88 -2.38 -0.02 2.61 16 4 C -0.09 -3.01 4.78 -19.87 -0.09 -3.10 16 5 C -0.13 -3.60 9.67 22.27 0.22 -3.39 16 6 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 7 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 8 C -0.15 -5.37 10.05 22.27 0.22 -5.15 16 9 C -0.10 -4.28 8.35 22.27 0.19 -4.09 16 10 C 0.08 2.92 3.17 31.26 0.10 3.02 16 11 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 12 C -0.14 -4.66 6.45 32.05 0.21 -4.45 16 13 C -0.14 -5.62 6.07 31.86 0.19 -5.43 16 14 C 0.22 10.58 0.82 -11.07 -0.01 10.57 16 15 C -0.13 -6.15 8.51 71.98 0.61 -5.54 16 16 C -0.56 -30.93 8.22 25.60 0.21 -30.72 16 17 H 0.05 2.52 7.52 -2.91 -0.02 2.50 16 18 C 0.04 2.27 5.26 84.65 0.45 2.72 16 19 N -0.88 -50.60 10.93 21.45 0.23 -50.37 16 20 Si 0.94 44.63 29.54 68.60 2.03 46.66 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 24 O -0.36 -17.50 6.43 -148.98 -0.96 -18.46 16 25 H 0.07 1.90 6.05 -2.39 -0.01 1.89 16 26 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.04 1.42 6.93 -2.39 -0.02 1.41 16 28 H 0.14 3.12 7.95 -2.91 -0.02 3.10 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.11 5.57 5.76 -2.91 -0.02 5.55 16 33 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.09 2.61 5.74 -2.39 -0.01 2.60 16 35 H 0.07 2.60 7.82 -2.39 -0.02 2.58 16 36 H 0.05 2.17 7.65 -2.39 -0.02 2.15 16 37 H 0.06 3.16 6.05 -2.38 -0.01 3.14 16 38 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -63.18 313.37 5.63 -57.55 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 1.01 Total: 21.99 kcal Atomic # 6 Polarization: -60.69 SS G_CDS: 3.32 Total: -57.37 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.23 Total: -50.37 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.96 Total: -18.46 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.18 5.63 -57.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383768087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.573 kcal (2) G-P(sol) polarization free energy of solvation -63.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds