Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46797 * 2 1 4 4 C 1.50697 * 109.47286 * 239.99882 * 2 1 3 5 5 C 1.38233 * 120.00203 * 299.73011 * 4 2 1 6 6 C 1.38233 * 120.00170 * 179.78912 * 5 4 2 7 7 C 1.38238 * 119.99916 * 0.43287 * 6 5 4 8 8 C 1.38237 * 119.99708 * 359.81989 * 7 6 5 9 9 C 1.38228 * 120.00376 * 359.97249 * 8 7 6 10 10 C 1.53001 * 109.46739 * 119.99949 * 2 1 3 11 11 H 1.08994 * 110.35231 * 59.31239 * 10 2 1 12 12 C 1.54944 * 110.31101 * 297.16506 * 10 2 1 13 13 C 1.55309 * 100.94264 * 204.64479 * 12 10 2 14 14 C 1.54378 * 102.25014 * 34.13276 * 13 12 10 15 15 C 1.52998 * 109.82935 * 98.16093 * 14 13 12 16 16 C 1.50706 * 109.82734 * 219.12999 * 14 13 12 17 17 H 1.07991 * 120.00321 * 359.59112 * 16 14 13 18 18 C 1.37874 * 119.99809 * 179.58898 * 16 14 13 19 19 N 1.31520 * 120.00163 * 180.02562 * 18 16 14 20 20 Si 1.86804 * 120.00341 * 0.02562 * 18 16 14 21 21 H 1.48502 * 109.47014 * 89.99725 * 20 18 16 22 22 H 1.48491 * 109.47529 * 209.99901 * 20 18 16 23 23 H 1.48498 * 109.46915 * 330.00081 * 20 18 16 24 24 O 1.43236 * 107.59193 * 338.64269 * 14 13 12 25 25 H 1.08996 * 109.47626 * 299.99894 * 1 2 3 26 26 H 1.09002 * 109.46804 * 59.99786 * 1 2 3 27 27 H 1.09002 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99975 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00287 * 180.27895 * 6 5 4 30 30 H 1.08005 * 119.99915 * 179.83248 * 7 6 5 31 31 H 1.08001 * 119.99436 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.00372 * 180.02562 * 9 8 7 33 33 H 1.09000 * 111.12659 * 322.56247 * 12 10 2 34 34 H 1.09000 * 111.12286 * 86.72151 * 12 10 2 35 35 H 1.08997 * 110.85030 * 152.32660 * 13 12 10 36 36 H 1.09007 * 110.84002 * 275.94609 * 13 12 10 37 37 H 1.08996 * 109.47301 * 300.41033 * 15 14 13 38 38 H 1.09006 * 109.47359 * 60.41114 * 15 14 13 39 39 H 1.09003 * 109.46893 * 180.40865 * 15 14 13 40 40 H 0.96996 * 119.99998 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.7031 -2.0355 -1.4464 6 6 2.1603 -2.6859 -2.5772 7 6 2.9543 -2.0138 -3.4876 8 6 3.2879 -0.6902 -3.2690 9 6 2.8271 -0.0386 -2.1404 10 6 2.0399 -0.7213 1.2493 11 1 1.6745 -1.7479 1.2699 12 6 1.5937 0.0343 2.5263 13 6 2.6824 -0.4231 3.5351 14 6 3.9299 -0.5514 2.6348 15 6 4.7891 0.7087 2.7558 16 6 4.7323 -1.7603 3.0424 17 1 4.3994 -2.3775 3.8636 18 6 5.8913 -2.0782 2.3667 19 7 6.5912 -3.1335 2.7220 20 14 6.4675 -1.0102 0.9465 21 1 7.3565 0.0616 1.4622 22 1 7.2130 -1.8447 -0.0297 23 1 5.2909 -0.3985 0.2781 24 8 3.4758 -0.7022 1.2847 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.0861 -2.5618 -0.7330 29 1 1.8993 -3.7199 -2.7482 30 1 3.3137 -2.5227 -4.3698 31 1 3.9085 -0.1653 -3.9801 32 1 3.0874 0.9956 -1.9698 33 1 1.6260 1.1134 2.3759 34 1 0.6022 -0.2863 2.8461 35 1 2.8370 0.3305 4.3072 36 1 2.4222 -1.3851 3.9769 37 1 4.2053 1.5772 2.4508 38 1 5.1101 0.8318 3.7902 39 1 5.6641 0.6150 2.1126 40 1 7.4068 -3.3569 2.2468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383768101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = -24.514212 kcal Electronic energy + Delta-G solvation = -20420.044530 eV Core-core repulsion = 17585.471276 eV Total energy + Delta-G solvation = -2834.573255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54013 -38.33323 -34.71562 -32.45248 -31.30277 -30.60337 -30.22927 -28.76453 -25.47285 -24.75215 -23.29075 -22.34770 -21.16381 -19.52917 -19.31918 -16.68964 -16.53761 -15.89593 -15.06455 -14.90322 -14.54452 -14.05200 -13.63787 -13.23330 -13.01392 -12.73036 -12.61913 -12.46529 -12.31167 -12.01343 -11.91454 -11.62085 -11.42799 -11.20231 -10.99108 -10.87280 -10.55226 -10.28576 -10.06391 -9.92079 -9.90499 -9.47772 -8.87713 -8.58191 -8.48917 -8.33699 -8.04820 -6.03499 -4.10726 1.71555 1.74072 3.41708 3.53284 3.77597 4.11867 4.60050 4.65205 4.91878 5.17822 5.26564 5.34233 5.35466 5.39432 5.47508 5.58765 5.60121 5.66492 5.80278 5.84580 5.96759 6.05408 6.09824 6.16756 6.24057 6.27435 6.32893 6.39525 6.44632 6.51766 6.57710 6.71527 6.77998 6.79890 6.81391 6.86421 7.02400 7.34000 7.36548 7.76463 8.36718 8.56124 8.97185 9.63110 11.07468 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.009509 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.901037 B = 2943.833936 C = 3871.460532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 H 0.078 0.922 4 C -0.052 4.052 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.132 4.132 8 C -0.123 4.123 9 C -0.112 4.112 10 C 0.087 3.913 11 H 0.059 0.941 12 C -0.152 4.152 13 C -0.129 4.129 14 C 0.192 3.808 15 C -0.146 4.146 16 C -0.523 4.523 17 H 0.074 0.926 18 C 0.085 3.915 19 N -0.896 5.896 20 Si 0.878 3.122 21 H -0.291 1.291 22 H -0.305 1.305 23 H -0.219 1.219 24 O -0.363 6.363 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 6.650 -8.222 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 H 0.096 0.904 4 C -0.052 4.052 5 C -0.128 4.128 6 C -0.138 4.138 7 C -0.150 4.150 8 C -0.141 4.141 9 C -0.131 4.131 10 C 0.029 3.971 11 H 0.076 0.924 12 C -0.190 4.190 13 C -0.167 4.167 14 C 0.154 3.846 15 C -0.203 4.203 16 C -0.560 4.560 17 H 0.093 0.907 18 C -0.118 4.118 19 N -0.534 5.534 20 Si 0.709 3.291 21 H -0.219 1.219 22 H -0.233 1.233 23 H -0.143 1.143 24 O -0.284 6.284 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.276 6.529 -8.419 15.513 hybrid contribution 0.575 0.343 -0.471 0.819 sum -10.700 6.872 -8.890 15.516 Atomic orbital electron populations 1.21790 0.94185 1.02069 1.01600 1.20381 0.95101 0.99361 0.92467 0.90409 1.19729 0.96440 0.94153 0.94870 1.20939 1.00505 0.94241 0.97104 1.21061 0.98453 0.99465 0.94832 1.21028 0.99431 0.94901 0.99682 1.21047 1.00128 0.95104 0.97813 1.20997 0.97796 0.99929 0.94333 1.22749 0.85563 0.97004 0.91798 0.92351 1.23275 0.98977 1.00069 0.96644 1.23019 0.94966 1.00933 0.97756 1.20046 0.91267 0.93953 0.79331 1.22282 0.99720 0.97261 1.01037 1.21152 1.06689 1.10484 1.17691 0.90748 1.24999 0.95894 0.94651 0.96305 1.69931 1.15998 1.26301 1.41151 0.87032 0.79588 0.79714 0.82770 1.21903 1.23292 1.14252 1.88832 1.15927 1.94039 1.29587 0.92167 0.92679 0.92446 0.86359 0.86498 0.86698 0.86649 0.86602 0.91537 0.91510 0.91885 0.91107 0.94912 0.92290 0.93639 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.81 37.16 0.33 -1.35 16 2 C -0.05 -0.84 2.33 -91.77 -0.21 -1.06 16 3 H 0.08 1.20 7.88 -51.93 -0.41 0.79 16 4 C -0.05 -0.86 4.50 -104.62 -0.47 -1.33 16 5 C -0.11 -1.77 8.73 -39.59 -0.35 -2.11 16 6 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 7 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 8 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 9 C -0.11 -1.83 9.67 -39.58 -0.38 -2.21 16 10 C 0.09 1.61 2.75 -25.70 -0.07 1.54 16 11 H 0.06 1.12 7.46 -51.93 -0.39 0.73 16 12 C -0.15 -2.47 5.55 -24.48 -0.14 -2.61 16 13 C -0.13 -2.52 6.07 -24.78 -0.15 -2.67 16 14 C 0.19 4.53 0.78 -91.05 -0.07 4.46 16 15 C -0.15 -3.24 8.23 37.16 0.31 -2.93 16 16 C -0.52 -14.96 8.83 -34.44 -0.30 -15.27 16 17 H 0.07 2.28 7.76 -52.49 -0.41 1.87 16 18 C 0.09 2.54 5.45 -17.82 -0.10 2.45 16 19 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 20 Si 0.88 23.31 23.92 -169.99 -4.07 19.24 16 21 H -0.29 -7.52 6.87 56.52 0.39 -7.14 16 22 H -0.30 -8.26 7.11 56.52 0.40 -7.86 16 23 H -0.22 -5.67 5.36 56.52 0.30 -5.37 16 24 O -0.36 -8.50 7.07 -35.23 -0.25 -8.74 16 25 H 0.06 0.65 7.28 -51.93 -0.38 0.28 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.67 7.40 -51.93 -0.38 0.28 16 28 H 0.12 1.75 7.14 -52.48 -0.37 1.38 16 29 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 30 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.72 7.95 -52.49 -0.42 1.31 16 33 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 34 H 0.07 0.92 8.05 -51.93 -0.42 0.51 16 35 H 0.06 1.12 7.82 -51.93 -0.41 0.71 16 36 H 0.07 1.43 7.66 -51.93 -0.40 1.04 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.08 3.24 -51.93 -0.17 0.91 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -32.36 310.74 -8.01 -40.37 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.35 Total: 1.77 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -2.80 Total: -29.88 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.77 Total: -27.44 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.25 Total: -8.74 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.07 Total: 19.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.36 -8.01 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383768101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.857 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds