Wall clock time and date at job start Mon Mar 30 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46797 * 2 1 4 4 C 1.50697 * 109.47286 * 239.99882 * 2 1 3 5 5 C 1.38233 * 120.00203 * 299.73011 * 4 2 1 6 6 C 1.38233 * 120.00170 * 179.78912 * 5 4 2 7 7 C 1.38238 * 119.99916 * 0.43287 * 6 5 4 8 8 C 1.38237 * 119.99708 * 359.81989 * 7 6 5 9 9 C 1.38228 * 120.00376 * 359.97249 * 8 7 6 10 10 C 1.53001 * 109.46739 * 119.99949 * 2 1 3 11 11 H 1.08994 * 110.35231 * 59.31239 * 10 2 1 12 12 C 1.54944 * 110.31101 * 297.16506 * 10 2 1 13 13 C 1.55309 * 100.94264 * 204.64479 * 12 10 2 14 14 C 1.54378 * 102.25014 * 34.13276 * 13 12 10 15 15 C 1.52998 * 109.82935 * 98.16093 * 14 13 12 16 16 C 1.50706 * 109.82734 * 219.12999 * 14 13 12 17 17 H 1.07991 * 120.00321 * 359.59112 * 16 14 13 18 18 C 1.37874 * 119.99809 * 179.58898 * 16 14 13 19 19 N 1.31520 * 120.00163 * 180.02562 * 18 16 14 20 20 Si 1.86804 * 120.00341 * 0.02562 * 18 16 14 21 21 H 1.48502 * 109.47014 * 89.99725 * 20 18 16 22 22 H 1.48491 * 109.47529 * 209.99901 * 20 18 16 23 23 H 1.48498 * 109.46915 * 330.00081 * 20 18 16 24 24 O 1.43236 * 107.59193 * 338.64269 * 14 13 12 25 25 H 1.08996 * 109.47626 * 299.99894 * 1 2 3 26 26 H 1.09002 * 109.46804 * 59.99786 * 1 2 3 27 27 H 1.09002 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99975 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00287 * 180.27895 * 6 5 4 30 30 H 1.08005 * 119.99915 * 179.83248 * 7 6 5 31 31 H 1.08001 * 119.99436 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.00372 * 180.02562 * 9 8 7 33 33 H 1.09000 * 111.12659 * 322.56247 * 12 10 2 34 34 H 1.09000 * 111.12286 * 86.72151 * 12 10 2 35 35 H 1.08997 * 110.85030 * 152.32660 * 13 12 10 36 36 H 1.09007 * 110.84002 * 275.94609 * 13 12 10 37 37 H 1.08996 * 109.47301 * 300.41033 * 15 14 13 38 38 H 1.09006 * 109.47359 * 60.41114 * 15 14 13 39 39 H 1.09003 * 109.46893 * 180.40865 * 15 14 13 40 40 H 0.96996 * 119.99998 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.7031 -2.0355 -1.4464 6 6 2.1603 -2.6859 -2.5772 7 6 2.9543 -2.0138 -3.4876 8 6 3.2879 -0.6902 -3.2690 9 6 2.8271 -0.0386 -2.1404 10 6 2.0399 -0.7213 1.2493 11 1 1.6745 -1.7479 1.2699 12 6 1.5937 0.0343 2.5263 13 6 2.6824 -0.4231 3.5351 14 6 3.9299 -0.5514 2.6348 15 6 4.7891 0.7087 2.7558 16 6 4.7323 -1.7603 3.0424 17 1 4.3994 -2.3775 3.8636 18 6 5.8913 -2.0782 2.3667 19 7 6.5912 -3.1335 2.7220 20 14 6.4675 -1.0102 0.9465 21 1 7.3565 0.0616 1.4622 22 1 7.2130 -1.8447 -0.0297 23 1 5.2909 -0.3985 0.2781 24 8 3.4758 -0.7022 1.2847 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.0861 -2.5618 -0.7330 29 1 1.8993 -3.7199 -2.7482 30 1 3.3137 -2.5227 -4.3698 31 1 3.9085 -0.1653 -3.9801 32 1 3.0874 0.9956 -1.9698 33 1 1.6260 1.1134 2.3759 34 1 0.6022 -0.2863 2.8461 35 1 2.8370 0.3305 4.3072 36 1 2.4222 -1.3851 3.9769 37 1 4.2053 1.5772 2.4508 38 1 5.1101 0.8318 3.7902 39 1 5.6641 0.6150 2.1126 40 1 7.4068 -3.3569 2.2468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383768101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:57 Heat of formation + Delta-G solvation = -43.281985 kcal Electronic energy + Delta-G solvation = -20420.858362 eV Core-core repulsion = 17585.471276 eV Total energy + Delta-G solvation = -2835.387086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90717 -39.72785 -36.08460 -34.49112 -32.96905 -31.86256 -31.69898 -29.95924 -27.29041 -26.39129 -24.59348 -23.53655 -22.50403 -21.16760 -20.74267 -18.64309 -17.91480 -17.45525 -16.52376 -16.31946 -16.08062 -15.45108 -15.05868 -14.66139 -14.60275 -14.22631 -14.15140 -13.89708 -13.76604 -13.65674 -13.10933 -12.99421 -12.83410 -12.70334 -12.45715 -12.19341 -12.05902 -11.98496 -11.67572 -11.65366 -11.28700 -11.16272 -10.77108 -10.70215 -9.92578 -9.74183 -9.45493 -8.33709 -6.42551 0.55517 0.57131 1.28956 1.38769 1.66545 2.40482 2.95027 2.95973 3.37644 3.75692 3.92079 4.04655 4.14020 4.19901 4.28706 4.31443 4.40363 4.44540 4.56492 4.65581 4.70401 4.73586 4.74959 4.81301 4.90691 4.98022 5.04348 5.09381 5.15697 5.21707 5.23611 5.27770 5.34911 5.43187 5.63751 5.64690 5.66466 5.69178 5.84324 6.20212 6.21682 6.59527 6.85176 7.35726 8.81184 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.009509 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.901037 B = 2943.833936 C = 3871.460532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.047 4.047 3 H 0.081 0.919 4 C -0.071 4.071 5 C -0.130 4.130 6 C -0.132 4.132 7 C -0.140 4.140 8 C -0.132 4.132 9 C -0.133 4.133 10 C 0.077 3.923 11 H 0.043 0.957 12 C -0.135 4.135 13 C -0.130 4.130 14 C 0.184 3.816 15 C -0.145 4.145 16 C -0.524 4.524 17 H 0.035 0.965 18 C 0.030 3.970 19 N -0.946 5.946 20 Si 0.939 3.061 21 H -0.280 1.280 22 H -0.318 1.318 23 H -0.207 1.207 24 O -0.388 6.388 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 8.951 -9.374 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.065 4.065 3 H 0.100 0.900 4 C -0.071 4.071 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.149 4.149 9 C -0.151 4.151 10 C 0.019 3.981 11 H 0.061 0.939 12 C -0.172 4.172 13 C -0.168 4.168 14 C 0.146 3.854 15 C -0.202 4.202 16 C -0.561 4.561 17 H 0.054 0.946 18 C -0.169 4.169 19 N -0.586 5.586 20 Si 0.768 3.232 21 H -0.207 1.207 22 H -0.247 1.247 23 H -0.130 1.130 24 O -0.308 6.308 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.986 8.850 -9.564 18.396 hybrid contribution 1.031 -0.463 -0.084 1.134 sum -11.955 8.387 -9.647 17.502 Atomic orbital electron populations 1.21759 0.91505 1.02613 1.03087 1.20348 0.97179 0.98686 0.90323 0.90036 1.19991 0.96963 0.94558 0.95618 1.21151 1.01229 0.94590 0.97815 1.21406 0.98366 1.00531 0.94679 1.21403 0.98977 0.95041 1.00404 1.21413 1.00065 0.95505 0.97959 1.21276 0.98192 1.00676 0.94956 1.23001 0.83102 0.97272 0.94686 0.93920 1.23242 0.99112 1.01092 0.93739 1.22962 0.94451 1.00958 0.98404 1.20003 0.92625 0.92190 0.80554 1.22223 0.99126 0.97715 1.01122 1.21584 1.06962 1.11559 1.16037 0.94649 1.25784 0.96426 0.95799 0.98863 1.70069 1.16939 1.28568 1.43049 0.86101 0.79323 0.78126 0.79682 1.20741 1.24742 1.13012 1.88721 1.19159 1.94209 1.28757 0.90382 0.91469 0.92422 0.86079 0.84681 0.84226 0.84402 0.85696 0.89186 0.88530 0.89795 0.92963 0.91400 0.91788 0.95445 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.81 71.98 0.63 -2.11 16 2 C -0.05 -1.33 2.33 -11.54 -0.03 -1.35 16 3 H 0.08 2.24 7.88 -2.39 -0.02 2.22 16 4 C -0.07 -2.25 4.50 -19.87 -0.09 -2.34 16 5 C -0.13 -4.06 8.73 22.27 0.19 -3.87 16 6 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 7 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 8 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 9 C -0.13 -4.07 9.67 22.27 0.22 -3.86 16 10 C 0.08 2.68 2.75 31.26 0.09 2.77 16 11 H 0.04 1.60 7.46 -2.39 -0.02 1.59 16 12 C -0.13 -3.87 5.55 32.05 0.18 -3.70 16 13 C -0.13 -4.83 6.07 31.86 0.19 -4.64 16 14 C 0.18 8.51 0.78 -11.07 -0.01 8.50 16 15 C -0.14 -6.07 8.23 71.98 0.59 -5.48 16 16 C -0.52 -30.68 8.83 25.60 0.23 -30.45 16 17 H 0.04 2.27 7.76 -2.92 -0.02 2.25 16 18 C 0.03 1.81 5.45 84.65 0.46 2.27 16 19 N -0.95 -61.76 13.96 21.45 0.30 -61.47 16 20 Si 0.94 48.99 23.92 68.60 1.64 50.63 16 21 H -0.28 -13.92 6.87 99.48 0.68 -13.24 16 22 H -0.32 -17.06 7.11 99.48 0.71 -16.35 16 23 H -0.21 -10.34 5.36 99.48 0.53 -9.81 16 24 O -0.39 -17.57 7.07 -148.98 -1.05 -18.62 16 25 H 0.08 1.34 7.28 -2.39 -0.02 1.32 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.19 7.40 -2.39 -0.02 1.17 16 28 H 0.12 3.55 7.14 -2.91 -0.02 3.53 16 29 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 32 H 0.13 3.45 7.95 -2.91 -0.02 3.43 16 33 H 0.09 2.23 8.06 -2.39 -0.02 2.21 16 34 H 0.10 2.24 8.05 -2.39 -0.02 2.22 16 35 H 0.08 2.74 7.82 -2.39 -0.02 2.72 16 36 H 0.05 2.10 7.66 -2.38 -0.02 2.08 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.03 1.24 3.24 -2.39 -0.01 1.23 16 40 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -71.98 310.74 5.02 -66.96 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.80 Total: 17.41 kcal Atomic # 6 Polarization: -58.24 SS G_CDS: 3.33 Total: -54.92 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.30 Total: -61.47 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -1.05 Total: -18.62 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.64 Total: 50.63 kcal Total: -71.98 5.02 -66.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383768101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.680 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds