Wall clock time and date at job start Mon Mar 30 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47206 * 2 1 4 4 C 1.50698 * 109.46956 * 240.00121 * 2 1 3 5 5 C 1.38236 * 119.99914 * 299.72616 * 4 2 1 6 6 C 1.38243 * 120.00058 * 179.81241 * 5 4 2 7 7 C 1.38232 * 119.99589 * 0.39693 * 6 5 4 8 8 C 1.38231 * 120.00315 * 359.85527 * 7 6 5 9 9 C 1.38232 * 120.00188 * 359.95890 * 8 7 6 10 10 C 1.52998 * 109.47410 * 120.00084 * 2 1 3 11 11 H 1.09002 * 110.55292 * 179.29719 * 10 2 1 12 12 C 1.54997 * 110.61637 * 302.17756 * 10 2 1 13 13 C 1.54809 * 102.09373 * 155.68273 * 12 10 2 14 14 C 1.54108 * 104.18490 * 339.11772 * 13 12 10 15 15 C 1.52995 * 109.87845 * 117.39707 * 14 13 12 16 16 C 1.50704 * 109.87614 * 238.54825 * 14 13 12 17 17 H 1.07993 * 120.00220 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99620 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00261 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99845 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46872 * 89.99785 * 20 18 16 22 22 H 1.48500 * 109.47099 * 209.99582 * 20 18 16 23 23 H 1.48496 * 109.47075 * 330.00004 * 20 18 16 24 24 O 1.44122 * 107.34739 * 357.97899 * 14 13 12 25 25 H 1.09006 * 109.47308 * 300.00330 * 1 2 3 26 26 H 1.09000 * 109.47190 * 59.99629 * 1 2 3 27 27 H 1.08995 * 109.47354 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00268 * 359.97438 * 5 4 2 29 29 H 1.07998 * 119.99720 * 180.22862 * 6 5 4 30 30 H 1.08002 * 119.99612 * 179.83992 * 7 6 5 31 31 H 1.08002 * 120.00126 * 179.97438 * 8 7 6 32 32 H 1.07994 * 120.00238 * 179.97438 * 9 8 7 33 33 H 1.08997 * 110.90645 * 273.87906 * 12 10 2 34 34 H 1.08997 * 110.90723 * 37.44317 * 12 10 2 35 35 H 1.08994 * 110.49381 * 97.79561 * 13 12 10 36 36 H 1.09001 * 110.48972 * 220.44598 * 13 12 10 37 37 H 1.09006 * 109.47294 * 60.00008 * 15 14 13 38 38 H 1.09000 * 109.47393 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47433 * 300.00231 * 15 14 13 40 40 H 0.96997 * 120.00250 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.7029 -2.0355 -1.4464 6 6 2.1604 -2.6860 -2.5771 7 6 2.9541 -2.0138 -3.4876 8 6 3.2877 -0.6903 -3.2691 9 6 2.8270 -0.0386 -2.1405 10 6 2.0400 -0.7212 1.2492 11 1 3.1297 -0.7424 1.2607 12 6 1.4936 -0.0439 2.5318 13 6 1.5561 -1.1992 3.5604 14 6 1.5923 -2.4738 2.6951 15 6 2.9044 -3.2249 2.9297 16 6 0.4228 -3.3599 3.0390 17 1 -0.2817 -3.0539 3.7981 18 6 0.2530 -4.5619 2.3851 19 7 1.1112 -4.9348 1.4610 20 14 -1.1962 -5.6606 2.8118 21 1 -2.3531 -5.3115 1.9487 22 1 -0.8232 -7.0807 2.5891 23 1 -1.5644 -5.4631 4.2368 24 8 1.5048 -2.0604 1.3172 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.0860 -2.5618 -0.7330 29 1 1.9001 -3.7202 -2.7476 30 1 3.3136 -2.5228 -4.3697 31 1 3.9081 -0.1652 -3.9804 32 1 3.0880 0.9953 -1.9695 33 1 2.1334 0.7839 2.8373 34 1 0.4673 0.2933 2.3866 35 1 2.4596 -1.1230 4.1654 36 1 0.6696 -1.1937 4.1947 37 1 2.9816 -3.5017 3.9812 38 1 2.9228 -4.1249 2.3152 39 1 3.7435 -2.5833 2.6604 40 1 0.9915 -5.7802 1.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383768106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:03 Heat of formation + Delta-G solvation = -30.463228 kcal Electronic energy + Delta-G solvation = -20454.072815 eV Core-core repulsion = 17619.241592 eV Total energy + Delta-G solvation = -2834.831223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.32120 -38.01800 -34.38120 -32.40108 -30.95054 -30.32918 -29.60564 -28.19261 -25.58577 -24.81069 -22.96712 -22.04141 -20.79654 -19.40596 -18.91419 -16.74085 -16.24046 -15.16138 -14.82597 -14.74451 -14.28640 -13.87074 -13.37930 -13.05211 -12.94320 -12.69439 -12.62771 -12.23161 -12.04388 -11.52266 -11.26527 -11.01935 -10.97467 -10.86833 -10.68931 -10.57713 -10.41168 -10.31878 -10.24542 -9.88912 -9.55672 -9.39206 -9.02280 -8.47776 -8.36971 -8.14911 -7.88621 -5.93733 -4.08938 1.86184 1.96935 3.30941 3.38117 3.40533 4.31688 4.43356 4.93073 5.18822 5.28667 5.45183 5.49374 5.51734 5.61094 5.75035 5.80663 5.86131 5.99281 6.02705 6.16143 6.25387 6.26312 6.38605 6.50168 6.56046 6.65227 6.66266 6.71913 6.80970 6.88662 6.92402 6.95402 7.00142 7.18903 7.21472 7.32038 7.36232 7.63127 7.80205 8.16242 8.40503 8.61804 9.04603 9.60852 11.07753 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.007798 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.583496 B = 3590.014119 C = 4312.263831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 H 0.071 0.929 4 C -0.073 4.073 5 C -0.078 4.078 6 C -0.123 4.123 7 C -0.132 4.132 8 C -0.136 4.136 9 C -0.127 4.127 10 C 0.075 3.925 11 H 0.046 0.954 12 C -0.151 4.151 13 C -0.141 4.141 14 C 0.226 3.774 15 C -0.148 4.148 16 C -0.519 4.519 17 H 0.059 0.941 18 C 0.081 3.919 19 N -0.858 5.858 20 Si 0.885 3.115 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 O -0.334 6.334 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.008 0.992 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 8.367 -5.221 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.060 4.060 3 H 0.090 0.910 4 C -0.073 4.073 5 C -0.096 4.096 6 C -0.142 4.142 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.145 4.145 10 C 0.016 3.984 11 H 0.064 0.936 12 C -0.189 4.189 13 C -0.179 4.179 14 C 0.189 3.811 15 C -0.206 4.206 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.124 4.124 19 N -0.495 5.495 20 Si 0.713 3.287 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.200 1.200 24 O -0.253 6.253 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.171 0.829 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.027 0.973 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.350 8.082 -5.515 10.062 hybrid contribution -0.493 -0.499 0.372 0.794 sum 1.857 7.582 -5.143 9.348 Atomic orbital electron populations 1.21803 0.94018 1.03528 1.00225 1.20162 0.96660 0.97308 0.91911 0.91024 1.19865 0.97305 0.94714 0.95415 1.21623 0.98011 0.93771 0.96151 1.21215 0.98304 0.99782 0.94852 1.21044 0.99622 0.94905 0.99483 1.20919 1.01418 0.95143 0.97945 1.20983 0.99151 0.99359 0.95015 1.22825 0.96152 0.87268 0.92185 0.93616 1.23194 1.01163 0.97858 0.96690 1.23045 1.00492 0.96052 0.98298 1.19680 0.93983 0.89245 0.78225 1.22158 0.95790 1.02682 0.99983 1.21057 1.10589 1.02509 1.21516 0.92292 1.24988 0.95659 0.97350 0.94398 1.69953 1.34649 1.21494 1.23409 0.86729 0.83283 0.79923 0.78793 1.20644 1.21274 1.19982 1.89283 1.81928 1.24906 1.29193 0.92501 0.93884 0.90710 0.82923 0.86540 0.87108 0.87097 0.87040 0.92714 0.90935 0.93239 0.91813 0.94924 0.89088 0.97307 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.54 37.15 0.32 -2.00 16 2 C -0.04 -0.71 2.61 -91.78 -0.24 -0.95 16 3 H 0.07 1.05 7.88 -51.93 -0.41 0.64 16 4 C -0.07 -1.29 4.78 -104.62 -0.50 -1.79 16 5 C -0.08 -1.53 8.42 -39.58 -0.33 -1.86 16 6 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 7 C -0.13 -2.03 10.05 -39.59 -0.40 -2.43 16 8 C -0.14 -2.00 10.05 -39.59 -0.40 -2.39 16 9 C -0.13 -1.97 9.67 -39.58 -0.38 -2.36 16 10 C 0.07 1.46 2.97 -25.68 -0.08 1.39 16 11 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 12 C -0.15 -2.73 6.48 -24.72 -0.16 -2.89 16 13 C -0.14 -2.92 6.26 -25.20 -0.16 -3.08 16 14 C 0.23 5.50 0.74 -91.19 -0.07 5.43 16 15 C -0.15 -3.61 8.39 37.15 0.31 -3.30 16 16 C -0.52 -13.88 8.26 -34.44 -0.28 -14.17 16 17 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 18 C 0.08 2.18 5.26 -17.82 -0.09 2.09 16 19 N -0.86 -23.65 10.92 55.43 0.61 -23.04 16 20 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 O -0.33 -7.91 6.78 -35.23 -0.24 -8.15 16 25 H 0.06 0.89 6.09 -51.93 -0.32 0.57 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.46 6.91 -51.93 -0.36 1.10 16 28 H 0.15 3.49 5.79 -52.48 -0.30 3.19 16 29 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.11 1.47 7.95 -52.49 -0.42 1.05 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.27 5.80 -51.93 -0.30 0.97 16 35 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 36 H 0.06 1.32 7.40 -51.93 -0.38 0.94 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 2.45 6.00 -51.93 -0.31 2.14 16 39 H 0.01 0.18 8.11 -51.93 -0.42 -0.24 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -27.73 313.06 -8.90 -36.63 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.10 Total: 4.91 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -2.86 Total: -30.88 kcal Atomic # 7 Polarization: -23.65 SS G_CDS: 0.61 Total: -23.04 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.24 Total: -8.15 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.73 -8.90 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383768106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.165 kcal (2) G-P(sol) polarization free energy of solvation -27.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds