Wall clock time and date at job start Mon Mar 30 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47206 * 2 1 4 4 C 1.50698 * 109.46956 * 240.00121 * 2 1 3 5 5 C 1.38236 * 119.99914 * 299.72616 * 4 2 1 6 6 C 1.38243 * 120.00058 * 179.81241 * 5 4 2 7 7 C 1.38232 * 119.99589 * 0.39693 * 6 5 4 8 8 C 1.38231 * 120.00315 * 359.85527 * 7 6 5 9 9 C 1.38232 * 120.00188 * 359.95890 * 8 7 6 10 10 C 1.52998 * 109.47410 * 120.00084 * 2 1 3 11 11 H 1.09002 * 110.55292 * 179.29719 * 10 2 1 12 12 C 1.54997 * 110.61637 * 302.17756 * 10 2 1 13 13 C 1.54809 * 102.09373 * 155.68273 * 12 10 2 14 14 C 1.54108 * 104.18490 * 339.11772 * 13 12 10 15 15 C 1.52995 * 109.87845 * 117.39707 * 14 13 12 16 16 C 1.50704 * 109.87614 * 238.54825 * 14 13 12 17 17 H 1.07993 * 120.00220 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99620 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00261 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99845 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46872 * 89.99785 * 20 18 16 22 22 H 1.48500 * 109.47099 * 209.99582 * 20 18 16 23 23 H 1.48496 * 109.47075 * 330.00004 * 20 18 16 24 24 O 1.44122 * 107.34739 * 357.97899 * 14 13 12 25 25 H 1.09006 * 109.47308 * 300.00330 * 1 2 3 26 26 H 1.09000 * 109.47190 * 59.99629 * 1 2 3 27 27 H 1.08995 * 109.47354 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00268 * 359.97438 * 5 4 2 29 29 H 1.07998 * 119.99720 * 180.22862 * 6 5 4 30 30 H 1.08002 * 119.99612 * 179.83992 * 7 6 5 31 31 H 1.08002 * 120.00126 * 179.97438 * 8 7 6 32 32 H 1.07994 * 120.00238 * 179.97438 * 9 8 7 33 33 H 1.08997 * 110.90645 * 273.87906 * 12 10 2 34 34 H 1.08997 * 110.90723 * 37.44317 * 12 10 2 35 35 H 1.08994 * 110.49381 * 97.79561 * 13 12 10 36 36 H 1.09001 * 110.48972 * 220.44598 * 13 12 10 37 37 H 1.09006 * 109.47294 * 60.00008 * 15 14 13 38 38 H 1.09000 * 109.47393 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47433 * 300.00231 * 15 14 13 40 40 H 0.96997 * 120.00250 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.7029 -2.0355 -1.4464 6 6 2.1604 -2.6860 -2.5771 7 6 2.9541 -2.0138 -3.4876 8 6 3.2877 -0.6903 -3.2691 9 6 2.8270 -0.0386 -2.1405 10 6 2.0400 -0.7212 1.2492 11 1 3.1297 -0.7424 1.2607 12 6 1.4936 -0.0439 2.5318 13 6 1.5561 -1.1992 3.5604 14 6 1.5923 -2.4738 2.6951 15 6 2.9044 -3.2249 2.9297 16 6 0.4228 -3.3599 3.0390 17 1 -0.2817 -3.0539 3.7981 18 6 0.2530 -4.5619 2.3851 19 7 1.1112 -4.9348 1.4610 20 14 -1.1962 -5.6606 2.8118 21 1 -2.3531 -5.3115 1.9487 22 1 -0.8232 -7.0807 2.5891 23 1 -1.5644 -5.4631 4.2368 24 8 1.5048 -2.0604 1.3172 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.0860 -2.5618 -0.7330 29 1 1.9001 -3.7202 -2.7476 30 1 3.3136 -2.5228 -4.3697 31 1 3.9081 -0.1652 -3.9804 32 1 3.0880 0.9953 -1.9695 33 1 2.1334 0.7839 2.8373 34 1 0.4673 0.2933 2.3866 35 1 2.4596 -1.1230 4.1654 36 1 0.6696 -1.1937 4.1947 37 1 2.9816 -3.5017 3.9812 38 1 2.9228 -4.1249 2.3152 39 1 3.7435 -2.5833 2.6604 40 1 0.9915 -5.7802 1.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383768106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:03 Heat of formation + Delta-G solvation = -43.382538 kcal Electronic energy + Delta-G solvation = -20454.633038 eV Core-core repulsion = 17619.241592 eV Total energy + Delta-G solvation = -2835.391447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76878 -39.50499 -35.92565 -34.26051 -32.61782 -31.61097 -31.21583 -29.66608 -27.46876 -26.52719 -24.44288 -23.32938 -22.22137 -21.18236 -20.36229 -18.64942 -17.50685 -16.75296 -16.64485 -16.12470 -15.83157 -15.35488 -15.00603 -14.58118 -14.40873 -14.30094 -13.97614 -13.89396 -13.52014 -13.19341 -12.92932 -12.79878 -12.50890 -12.44102 -12.33503 -12.24963 -12.04014 -11.89959 -11.69386 -11.59073 -11.12648 -10.99285 -10.85825 -10.51451 -9.73954 -9.65372 -9.39522 -7.98268 -6.19528 0.59363 0.68489 1.40251 1.42290 1.50423 2.44814 3.01176 3.16053 3.63547 3.93966 3.99200 4.18837 4.24238 4.28682 4.30586 4.39588 4.53548 4.57214 4.69285 4.77075 4.87000 4.89417 4.92869 4.95181 5.05541 5.08721 5.13474 5.17310 5.33184 5.36270 5.38495 5.41899 5.49570 5.61759 5.69782 5.71783 5.85798 6.00506 6.16745 6.31157 6.42830 6.69204 7.16490 7.53681 9.01428 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.007798 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.583496 B = 3590.014119 C = 4312.263831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.037 4.037 3 H 0.107 0.893 4 C -0.087 4.087 5 C -0.107 4.107 6 C -0.144 4.144 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.125 4.125 10 C 0.067 3.933 11 H 0.038 0.962 12 C -0.140 4.140 13 C -0.140 4.140 14 C 0.211 3.789 15 C -0.140 4.140 16 C -0.537 4.537 17 H 0.053 0.947 18 C 0.037 3.963 19 N -0.881 5.881 20 Si 0.941 3.059 21 H -0.282 1.282 22 H -0.285 1.285 23 H -0.268 1.268 24 O -0.355 6.355 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 10.920 -6.067 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 H 0.125 0.875 4 C -0.087 4.087 5 C -0.125 4.125 6 C -0.162 4.162 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.142 4.142 10 C 0.008 3.992 11 H 0.056 0.944 12 C -0.177 4.177 13 C -0.178 4.178 14 C 0.173 3.827 15 C -0.198 4.198 16 C -0.575 4.575 17 H 0.071 0.929 18 C -0.166 4.166 19 N -0.518 5.518 20 Si 0.767 3.233 21 H -0.208 1.208 22 H -0.211 1.211 23 H -0.193 1.193 24 O -0.275 6.275 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.128 10.639 -6.352 12.780 hybrid contribution -0.686 -1.281 0.581 1.565 sum 2.442 9.359 -5.771 11.263 Atomic orbital electron populations 1.21717 0.94209 1.01300 1.01643 1.20203 0.96479 0.98482 0.90368 0.87509 1.19989 0.98197 0.94018 0.96483 1.21358 0.99441 0.95175 0.96538 1.21303 0.99596 0.99947 0.95363 1.21362 0.98373 0.95558 0.99548 1.21396 1.00551 0.94713 0.98063 1.21350 0.97744 1.00753 0.94391 1.23039 0.95737 0.85939 0.94457 0.94447 1.23156 1.02240 0.97642 0.94674 1.22961 1.00844 0.95486 0.98478 1.19735 0.92686 0.90680 0.79550 1.22037 0.96787 1.01634 0.99351 1.21392 1.11331 1.03397 1.21397 0.92911 1.25638 0.97812 0.98667 0.94457 1.70098 1.35979 1.21576 1.24196 0.85843 0.80460 0.78291 0.78660 1.20774 1.21057 1.19272 1.89276 1.82343 1.27393 1.28470 0.91446 0.91984 0.94730 0.87431 0.87169 0.84272 0.83259 0.83773 0.89299 0.90353 0.92007 0.92325 0.94705 0.92217 0.96095 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 8.54 71.98 0.62 -3.68 16 2 C -0.04 -1.20 2.61 -11.54 -0.03 -1.23 16 3 H 0.11 2.69 7.88 -2.39 -0.02 2.68 16 4 C -0.09 -2.99 4.78 -19.87 -0.09 -3.08 16 5 C -0.11 -4.36 8.42 22.27 0.19 -4.17 16 6 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 7 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 8 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 9 C -0.12 -3.44 9.67 22.27 0.22 -3.23 16 10 C 0.07 2.56 2.97 31.28 0.09 2.66 16 11 H 0.04 1.48 8.11 -2.39 -0.02 1.46 16 12 C -0.14 -4.74 6.48 31.90 0.21 -4.54 16 13 C -0.14 -5.68 6.26 31.59 0.20 -5.48 16 14 C 0.21 10.49 0.74 -11.17 -0.01 10.48 16 15 C -0.14 -6.99 8.39 71.98 0.60 -6.39 16 16 C -0.54 -29.60 8.26 25.60 0.21 -29.39 16 17 H 0.05 2.88 7.33 -2.91 -0.02 2.86 16 18 C 0.04 2.04 5.26 84.65 0.45 2.49 16 19 N -0.88 -50.92 10.92 21.45 0.23 -50.69 16 20 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 O -0.36 -17.38 6.78 -148.98 -1.01 -18.39 16 25 H 0.07 2.01 6.09 -2.38 -0.01 1.99 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.39 6.91 -2.39 -0.02 1.37 16 28 H 0.11 5.36 5.79 -2.91 -0.02 5.34 16 29 H 0.11 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.14 3.02 7.95 -2.91 -0.02 3.00 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.56 5.80 -2.39 -0.01 2.55 16 35 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 36 H 0.06 2.40 7.40 -2.39 -0.02 2.38 16 37 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.06 3.35 6.00 -2.39 -0.01 3.33 16 39 H 0.02 0.93 8.11 -2.39 -0.02 0.91 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -62.95 313.06 5.57 -57.37 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 1.01 Total: 22.73 kcal Atomic # 6 Polarization: -60.44 SS G_CDS: 3.31 Total: -57.13 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.23 Total: -50.69 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.01 Total: -18.39 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -62.95 5.57 -57.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383768106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.991 kcal (2) G-P(sol) polarization free energy of solvation -62.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds