Wall clock time and date at job start Mon Mar 30 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38251 * 120.00359 * 265.00184 * 3 2 1 5 5 C 1.38209 * 120.00588 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.99401 * 359.96057 * 5 4 3 7 7 C 1.38204 * 120.00298 * 359.97438 * 6 5 4 8 8 C 1.38212 * 119.99857 * 84.72617 * 3 2 1 9 9 C 1.50697 * 120.00265 * 0.02562 * 8 3 2 10 10 H 1.09001 * 109.47908 * 325.02367 * 9 8 3 11 11 C 1.53091 * 109.48275 * 85.05249 * 9 8 3 12 12 C 1.53180 * 109.16488 * 177.59150 * 11 9 8 13 13 C 1.53177 * 109.03910 * 303.02320 * 12 11 9 14 14 C 1.53094 * 109.16240 * 56.97978 * 13 12 11 15 15 H 1.09005 * 109.48163 * 62.37006 * 14 13 12 16 16 C 1.50700 * 109.48327 * 182.40902 * 14 13 12 17 17 H 1.08003 * 119.99564 * 359.94004 * 16 14 13 18 18 C 1.37873 * 120.00245 * 179.97438 * 16 14 13 19 19 N 1.31512 * 119.99821 * 179.97438 * 18 16 14 20 20 Si 1.86799 * 119.99986 * 359.97438 * 18 16 14 21 21 H 1.48497 * 109.47227 * 90.00162 * 20 18 16 22 22 H 1.48502 * 109.47238 * 210.00170 * 20 18 16 23 23 H 1.48506 * 109.46924 * 330.00012 * 20 18 16 24 24 O 1.42902 * 109.48500 * 204.99857 * 9 8 3 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08009 * 119.99954 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.00460 * 179.97438 * 5 4 3 32 32 H 1.08007 * 119.99654 * 180.02562 * 6 5 4 33 33 H 1.08005 * 120.00120 * 180.02562 * 7 6 5 34 34 H 1.08991 * 109.52856 * 297.50491 * 11 9 8 35 35 H 1.09004 * 109.51810 * 57.68910 * 11 9 8 36 36 H 1.09003 * 109.54386 * 183.15226 * 12 11 9 37 37 H 1.08998 * 109.61238 * 62.93652 * 12 11 9 38 38 H 1.08996 * 109.52238 * 297.07382 * 13 12 11 39 39 H 1.08996 * 109.52173 * 176.88296 * 13 12 11 40 40 H 0.97009 * 119.99675 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0378 -1.1927 5 6 2.8215 3.3409 -1.1928 6 6 2.9523 4.0279 0.0000 7 6 2.6223 3.4116 1.1922 8 6 2.1590 2.1089 1.1919 9 6 1.7953 1.4384 2.4915 10 1 0.9480 0.7715 2.3318 11 6 2.9916 0.6308 3.0017 12 6 2.6346 0.0016 4.3520 13 6 2.2230 1.1096 5.3263 14 6 1.0563 1.8986 4.7263 15 1 0.1994 1.2377 4.5959 16 6 0.6841 3.0277 5.6524 17 1 1.2245 3.1683 6.5769 18 6 -0.3467 3.8808 5.3198 19 7 -0.6718 4.8658 6.1283 20 14 -1.2815 3.6375 3.7210 21 1 -2.4362 2.7337 3.9553 22 1 -1.7721 4.9503 3.2297 23 1 -0.3792 3.0353 2.7068 24 8 1.4451 2.4308 3.4583 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.2584 1.5013 -2.1245 31 1 3.0787 3.8228 -2.1244 32 1 3.3116 5.0464 -0.0001 33 1 2.7241 3.9484 2.1239 34 1 3.2326 -0.1551 2.2860 35 1 3.8511 1.2902 3.1230 36 1 3.5008 -0.5287 4.7476 37 1 1.8074 -0.6964 4.2230 38 1 3.0669 1.7786 5.4946 39 1 1.9142 0.6661 6.2728 40 1 -1.3973 5.4658 5.8945 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384068346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:31 Heat of formation + Delta-G solvation = -39.760888 kcal Electronic energy + Delta-G solvation = -20348.137399 eV Core-core repulsion = 17512.902999 eV Total energy + Delta-G solvation = -2835.234400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79547 -37.92543 -34.20172 -32.95755 -32.78486 -31.59088 -29.48741 -28.86314 -25.91492 -24.20981 -23.49156 -21.80131 -21.29231 -20.09305 -19.38572 -16.88686 -16.27842 -15.88916 -15.22693 -14.91825 -14.26794 -14.05096 -13.87396 -13.58011 -13.40599 -13.38011 -13.00663 -12.72308 -12.31508 -12.17949 -11.95654 -11.63872 -11.34480 -11.05681 -10.90758 -10.81085 -10.73147 -10.48881 -10.42142 -9.98689 -9.84646 -9.58489 -9.09002 -8.55795 -8.53460 -8.42999 -7.96775 -6.10768 -4.18871 1.59802 1.70345 3.39194 3.47610 3.70446 4.02006 4.54487 4.61243 4.92439 5.00114 5.15553 5.28249 5.32978 5.39814 5.40965 5.45049 5.51689 5.55122 5.70019 5.79523 5.85919 5.89631 5.92387 5.98497 6.12619 6.19104 6.24995 6.30701 6.37187 6.46581 6.51276 6.58986 6.66661 6.72308 6.73912 6.86066 7.03226 7.21559 7.31086 7.64914 8.43362 8.55471 8.92452 9.53764 10.99360 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.008317 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.402924 B = 3365.853691 C = 3822.196249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.083 4.083 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.130 4.130 7 C -0.088 4.088 8 C -0.064 4.064 9 C 0.118 3.882 10 H 0.056 0.944 11 C -0.138 4.138 12 C -0.122 4.122 13 C -0.134 4.134 14 C 0.185 3.815 15 H 0.011 0.989 16 C -0.515 4.515 17 H 0.079 0.921 18 C 0.085 3.915 19 N -0.891 5.891 20 Si 0.868 3.132 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.220 1.220 24 O -0.369 6.369 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -8.833 -13.447 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.106 4.106 8 C -0.064 4.064 9 C 0.059 3.941 10 H 0.073 0.927 11 C -0.175 4.175 12 C -0.160 4.160 13 C -0.172 4.172 14 C 0.130 3.870 15 H 0.029 0.971 16 C -0.552 4.552 17 H 0.097 0.903 18 C -0.120 4.120 19 N -0.528 5.528 20 Si 0.695 3.305 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.143 1.143 24 O -0.289 6.289 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.907 -8.495 -13.447 16.967 hybrid contribution -0.569 -0.099 -0.674 0.887 sum 5.338 -8.595 -14.121 17.371 Atomic orbital electron populations 1.21783 0.94860 1.01526 1.02560 1.20585 0.96251 0.92990 1.02617 1.19644 0.99854 0.96210 0.92553 1.20853 1.01262 0.95319 0.96897 1.21032 1.00857 0.94873 0.97769 1.21162 1.01153 0.99818 0.92667 1.21193 0.96261 0.94444 0.98664 1.19698 0.98421 0.94679 0.93591 1.20680 0.95203 0.90747 0.87460 0.92660 1.22122 0.99086 0.99305 0.97032 1.21658 1.00403 0.98297 0.95635 1.22062 1.00466 0.96700 0.97947 1.20153 0.91012 0.94724 0.81117 0.97110 1.20916 1.16546 1.13396 1.04299 0.90280 1.25037 0.96404 0.93941 0.96586 1.69933 1.29303 1.16409 1.37165 0.87078 0.79660 0.77754 0.86048 1.21457 1.22000 1.14290 1.88428 1.86329 1.31581 1.22553 0.92674 0.92086 0.92496 0.90701 0.91391 0.86624 0.86680 0.86401 0.84717 0.92224 0.91407 0.92611 0.92601 0.91889 0.91941 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.72 37.16 0.36 -1.52 16 2 C -0.09 -1.09 5.38 -27.89 -0.15 -1.24 16 3 C -0.08 -1.23 5.13 -104.63 -0.54 -1.77 16 4 C -0.13 -1.69 9.68 -39.59 -0.38 -2.07 16 5 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 6 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 7 C -0.09 -1.56 9.35 -39.59 -0.37 -1.93 16 8 C -0.06 -1.12 5.07 -104.62 -0.53 -1.65 16 9 C 0.12 2.20 1.99 -27.84 -0.06 2.14 16 10 H 0.06 1.03 5.60 -51.93 -0.29 0.74 16 11 C -0.14 -2.24 5.25 -26.59 -0.14 -2.38 16 12 C -0.12 -1.99 6.03 -26.55 -0.16 -2.15 16 13 C -0.13 -2.68 5.36 -26.59 -0.14 -2.82 16 14 C 0.19 4.40 1.99 -27.83 -0.06 4.35 16 15 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 16 C -0.51 -14.62 9.38 -34.44 -0.32 -14.95 16 17 H 0.08 2.40 7.99 -52.48 -0.42 1.98 16 18 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 19 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 20 Si 0.87 22.18 26.99 -169.99 -4.59 17.59 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.22 -5.43 5.16 56.52 0.29 -5.14 16 24 O -0.37 -8.48 5.78 -35.23 -0.20 -8.69 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.90 6.77 -51.93 -0.35 0.55 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.94 5.62 -51.93 -0.29 0.64 16 29 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 30 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.13 2.62 7.36 -52.48 -0.39 2.23 16 34 H 0.06 0.83 6.76 -51.93 -0.35 0.48 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -30.79 311.20 -9.08 -39.87 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.37 Total: 1.30 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.38 Total: -28.07 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.20 Total: -8.69 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.59 Total: 17.59 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.79 -9.08 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384068346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.113 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds