Wall clock time and date at job start Mon Mar 30 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38251 * 120.00359 * 265.00184 * 3 2 1 5 5 C 1.38209 * 120.00588 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.99401 * 359.96057 * 5 4 3 7 7 C 1.38204 * 120.00298 * 359.97438 * 6 5 4 8 8 C 1.38212 * 119.99857 * 84.72617 * 3 2 1 9 9 C 1.50697 * 120.00265 * 0.02562 * 8 3 2 10 10 H 1.09001 * 109.47908 * 325.02367 * 9 8 3 11 11 C 1.53091 * 109.48275 * 85.05249 * 9 8 3 12 12 C 1.53180 * 109.16488 * 177.59150 * 11 9 8 13 13 C 1.53177 * 109.03910 * 303.02320 * 12 11 9 14 14 C 1.53094 * 109.16240 * 56.97978 * 13 12 11 15 15 H 1.09005 * 109.48163 * 62.37006 * 14 13 12 16 16 C 1.50700 * 109.48327 * 182.40902 * 14 13 12 17 17 H 1.08003 * 119.99564 * 359.94004 * 16 14 13 18 18 C 1.37873 * 120.00245 * 179.97438 * 16 14 13 19 19 N 1.31512 * 119.99821 * 179.97438 * 18 16 14 20 20 Si 1.86799 * 119.99986 * 359.97438 * 18 16 14 21 21 H 1.48497 * 109.47227 * 90.00162 * 20 18 16 22 22 H 1.48502 * 109.47238 * 210.00170 * 20 18 16 23 23 H 1.48506 * 109.46924 * 330.00012 * 20 18 16 24 24 O 1.42902 * 109.48500 * 204.99857 * 9 8 3 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08009 * 119.99954 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.00460 * 179.97438 * 5 4 3 32 32 H 1.08007 * 119.99654 * 180.02562 * 6 5 4 33 33 H 1.08005 * 120.00120 * 180.02562 * 7 6 5 34 34 H 1.08991 * 109.52856 * 297.50491 * 11 9 8 35 35 H 1.09004 * 109.51810 * 57.68910 * 11 9 8 36 36 H 1.09003 * 109.54386 * 183.15226 * 12 11 9 37 37 H 1.08998 * 109.61238 * 62.93652 * 12 11 9 38 38 H 1.08996 * 109.52238 * 297.07382 * 13 12 11 39 39 H 1.08996 * 109.52173 * 176.88296 * 13 12 11 40 40 H 0.97009 * 119.99675 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0378 -1.1927 5 6 2.8215 3.3409 -1.1928 6 6 2.9523 4.0279 0.0000 7 6 2.6223 3.4116 1.1922 8 6 2.1590 2.1089 1.1919 9 6 1.7953 1.4384 2.4915 10 1 0.9480 0.7715 2.3318 11 6 2.9916 0.6308 3.0017 12 6 2.6346 0.0016 4.3520 13 6 2.2230 1.1096 5.3263 14 6 1.0563 1.8986 4.7263 15 1 0.1994 1.2377 4.5959 16 6 0.6841 3.0277 5.6524 17 1 1.2245 3.1683 6.5769 18 6 -0.3467 3.8808 5.3198 19 7 -0.6718 4.8658 6.1283 20 14 -1.2815 3.6375 3.7210 21 1 -2.4362 2.7337 3.9553 22 1 -1.7721 4.9503 3.2297 23 1 -0.3792 3.0353 2.7068 24 8 1.4451 2.4308 3.4583 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.2584 1.5013 -2.1245 31 1 3.0787 3.8228 -2.1244 32 1 3.3116 5.0464 -0.0001 33 1 2.7241 3.9484 2.1239 34 1 3.2326 -0.1551 2.2860 35 1 3.8511 1.2902 3.1230 36 1 3.5008 -0.5287 4.7476 37 1 1.8074 -0.6964 4.2230 38 1 3.0669 1.7786 5.4946 39 1 1.9142 0.6661 6.2728 40 1 -1.3973 5.4658 5.8945 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384068346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:31 Heat of formation + Delta-G solvation = -56.349062 kcal Electronic energy + Delta-G solvation = -20348.856716 eV Core-core repulsion = 17512.902999 eV Total energy + Delta-G solvation = -2835.953717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08895 -39.39383 -35.37685 -34.84829 -34.31039 -33.20454 -30.81272 -30.12418 -27.71622 -25.54873 -24.67231 -23.39598 -22.59681 -21.26969 -20.93469 -19.00634 -17.61054 -17.24272 -16.85949 -16.18089 -15.99267 -15.47715 -15.32090 -14.95617 -14.70321 -14.52442 -14.39283 -14.23174 -13.96311 -13.54084 -13.05765 -12.96375 -12.90881 -12.54482 -12.42315 -12.25049 -12.06978 -11.90252 -11.85298 -11.61501 -11.55512 -11.16753 -10.97377 -10.73120 -9.99865 -9.62545 -9.35623 -8.38496 -6.50153 0.45964 0.54315 1.31449 1.36573 1.64438 2.39172 2.78597 2.90674 3.41764 3.88273 3.92375 3.99203 4.06643 4.12448 4.22302 4.28585 4.33520 4.37085 4.45462 4.52645 4.65282 4.68876 4.73950 4.77809 4.91174 4.97268 5.04152 5.09611 5.12430 5.17997 5.20306 5.23112 5.28936 5.41156 5.51755 5.57012 5.63251 5.69763 5.83496 6.17688 6.21477 6.54385 6.90181 7.27236 8.75506 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.008317 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.402924 B = 3365.853691 C = 3822.196249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.088 4.088 9 C 0.112 3.888 10 H 0.059 0.941 11 C -0.131 4.131 12 C -0.114 4.114 13 C -0.132 4.132 14 C 0.189 3.811 15 H 0.012 0.988 16 C -0.525 4.525 17 H 0.042 0.958 18 C 0.031 3.969 19 N -0.938 5.938 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.298 1.298 23 H -0.210 1.210 24 O -0.392 6.392 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 -11.388 -17.164 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.156 4.156 7 C -0.137 4.137 8 C -0.088 4.088 9 C 0.054 3.946 10 H 0.077 0.923 11 C -0.169 4.169 12 C -0.152 4.152 13 C -0.170 4.170 14 C 0.133 3.867 15 H 0.029 0.971 16 C -0.562 4.562 17 H 0.060 0.940 18 C -0.169 4.169 19 N -0.578 5.578 20 Si 0.755 3.245 21 H -0.204 1.204 22 H -0.225 1.225 23 H -0.132 1.132 24 O -0.313 6.313 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.431 -11.069 -17.163 21.412 hybrid contribution -0.649 0.711 0.458 1.066 sum 5.782 -10.359 -16.704 20.488 Atomic orbital electron populations 1.21780 0.95000 1.02567 1.01319 1.20660 0.96012 0.91558 1.04099 1.19942 0.99247 0.97402 0.91933 1.21302 0.99517 0.95354 0.97670 1.21438 0.99287 0.94973 0.98196 1.21363 1.01064 1.00661 0.92499 1.21090 0.98895 0.95219 0.98544 1.19724 1.00141 0.94902 0.94047 1.20928 0.96317 0.90205 0.87118 0.92307 1.22084 0.97508 0.99605 0.97694 1.21627 1.02089 0.96989 0.94446 1.21975 0.98418 0.97483 0.99097 1.19909 0.92577 0.92978 0.81262 0.97087 1.21234 1.16042 1.14547 1.04343 0.93991 1.25866 0.97554 0.93718 0.99767 1.70058 1.30536 1.17903 1.39259 0.86099 0.78525 0.77492 0.82344 1.20382 1.22481 1.13180 1.88297 1.86713 1.33525 1.22739 0.92165 0.95031 0.90364 0.90712 0.88406 0.83105 0.83309 0.85097 0.88105 0.88981 0.92543 0.89709 0.91128 0.93465 0.91753 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.72 71.98 0.70 -2.53 16 2 C -0.09 -1.79 5.38 29.85 0.16 -1.63 16 3 C -0.09 -2.27 5.13 -19.87 -0.10 -2.37 16 4 C -0.12 -2.72 9.68 22.27 0.22 -2.50 16 5 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 6 C -0.14 -3.97 10.05 22.27 0.22 -3.75 16 7 C -0.12 -4.29 9.35 22.27 0.21 -4.08 16 8 C -0.09 -2.99 5.07 -19.87 -0.10 -3.09 16 9 C 0.11 4.07 1.99 29.88 0.06 4.13 16 10 H 0.06 2.09 5.60 -2.39 -0.01 2.08 16 11 C -0.13 -4.00 5.25 30.68 0.16 -3.84 16 12 C -0.11 -3.44 6.03 30.71 0.19 -3.25 16 13 C -0.13 -5.29 5.36 30.68 0.16 -5.13 16 14 C 0.19 9.13 1.99 29.88 0.06 9.19 16 15 H 0.01 0.55 7.57 -2.38 -0.02 0.54 16 16 C -0.52 -31.24 9.38 25.60 0.24 -31.00 16 17 H 0.04 2.72 7.99 -2.91 -0.02 2.70 16 18 C 0.03 1.86 5.47 84.65 0.46 2.33 16 19 N -0.94 -60.49 13.96 21.45 0.30 -60.20 16 20 Si 0.93 47.35 26.99 68.60 1.85 49.20 16 21 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 23 H -0.21 -10.23 5.16 99.48 0.51 -9.71 16 24 O -0.39 -18.33 5.78 -148.98 -0.86 -19.19 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.03 0.86 6.77 -2.39 -0.02 0.84 16 27 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.55 5.62 -2.39 -0.01 1.54 16 29 H 0.10 1.48 8.05 -2.39 -0.02 1.46 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.10 4.19 7.36 -2.91 -0.02 4.17 16 34 H 0.09 2.23 6.76 -2.39 -0.02 2.21 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.27 16.15 8.31 -92.70 -0.77 15.38 16 Total: -1.00 -70.60 311.20 4.96 -65.64 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.81 Total: 14.65 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 2.86 Total: -50.11 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.86 Total: -19.19 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.85 Total: 49.20 kcal Total: -70.60 4.96 -65.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384068346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.294 kcal (2) G-P(sol) polarization free energy of solvation -70.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds