Wall clock time and date at job start Mon Mar 30 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50691 * 109.47109 * 2 1 4 4 C 1.38260 * 120.00718 * 93.83838 * 3 2 1 5 5 C 1.38211 * 120.00251 * 180.27429 * 4 3 2 6 6 C 1.38252 * 120.00222 * 359.74954 * 5 4 3 7 7 C 1.38217 * 120.00028 * 359.97438 * 6 5 4 8 8 C 1.38221 * 120.00011 * 273.58865 * 3 2 1 9 9 C 1.50701 * 119.99642 * 359.97438 * 8 3 2 10 10 H 1.08997 * 109.48216 * 33.86639 * 9 8 3 11 11 C 1.53099 * 109.47783 * 273.83196 * 9 8 3 12 12 C 1.53178 * 109.15957 * 182.40712 * 11 9 8 13 13 C 1.53177 * 109.03677 * 56.98381 * 12 11 9 14 14 C 1.53097 * 109.16495 * 303.01873 * 13 12 11 15 15 H 1.09009 * 109.47368 * 297.62934 * 14 13 12 16 16 C 1.50699 * 109.49435 * 177.60072 * 14 13 12 17 17 H 1.07997 * 119.99351 * 0.02562 * 16 14 13 18 18 C 1.37872 * 119.99973 * 180.02562 * 16 14 13 19 19 N 1.31513 * 120.00311 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99831 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47454 * 59.99603 * 20 18 16 22 22 H 1.48498 * 109.47120 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47470 * 299.99436 * 20 18 16 24 24 O 1.42900 * 109.41512 * 57.60439 * 14 13 12 25 25 H 1.09004 * 109.47194 * 294.69416 * 1 2 3 26 26 H 1.08997 * 109.47193 * 54.69391 * 1 2 3 27 27 H 1.09001 * 109.47180 * 174.69462 * 1 2 3 28 28 H 1.08991 * 109.47233 * 239.99631 * 2 1 3 29 29 H 1.09008 * 109.46871 * 119.99662 * 2 1 3 30 30 H 1.08004 * 119.99565 * 0.05037 * 4 3 2 31 31 H 1.08003 * 119.99374 * 179.77154 * 5 4 3 32 32 H 1.08000 * 120.00491 * 180.02562 * 6 5 4 33 33 H 1.07995 * 120.00388 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.52211 * 302.31332 * 11 9 8 35 35 H 1.08995 * 109.52383 * 62.50641 * 11 9 8 36 36 H 1.09006 * 109.53982 * 176.84491 * 12 11 9 37 37 H 1.08993 * 109.55003 * 297.02715 * 12 11 9 38 38 H 1.08999 * 109.52448 * 183.10936 * 13 12 11 39 39 H 1.09007 * 109.52622 * 62.91973 * 13 12 11 40 40 H 0.97001 * 120.00533 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3383 2.0459 1.1946 5 6 2.7936 3.3509 1.1949 6 6 2.9480 4.0295 0.0003 7 6 2.6475 3.4027 -1.1944 8 6 2.1920 2.0973 -1.1947 9 6 1.8644 1.4138 -2.4972 10 1 1.0255 0.7337 -2.3499 11 6 3.0837 0.6240 -2.9801 12 6 2.7630 -0.0182 -4.3333 13 6 2.3516 1.0775 -5.3214 14 6 1.1606 1.8500 -4.7481 15 1 0.3126 1.1753 -4.6303 16 6 0.7870 2.9677 -5.6873 17 1 1.3426 3.1128 -6.6019 18 6 -0.2642 3.8048 -5.3789 19 7 -0.9411 3.6278 -4.2654 20 14 -0.7269 5.1907 -6.5428 21 1 -1.0953 4.6244 -7.8652 22 1 -1.8822 5.9396 -5.9863 23 1 0.4286 6.1097 -6.7025 24 8 1.5160 2.3952 -3.4759 25 1 -0.3634 0.4293 0.9337 26 1 -0.3633 0.5939 -0.8386 27 1 -0.3633 -1.0233 -0.0950 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.2182 1.5157 2.1278 31 1 3.0292 3.8403 2.1284 32 1 3.3042 5.0490 0.0004 33 1 2.7677 3.9328 -2.1276 34 1 3.9341 1.2971 -3.0888 35 1 3.3240 -0.1540 -2.2556 36 1 3.6455 -0.5358 -4.7095 37 1 1.9458 -0.7297 -4.2149 38 1 2.0685 0.6239 -6.2712 39 1 3.1872 1.7599 -5.4774 40 1 -1.6809 4.2165 -4.0485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384068349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:34 Heat of formation + Delta-G solvation = -45.810190 kcal Electronic energy + Delta-G solvation = -20166.739881 eV Core-core repulsion = 17331.243163 eV Total energy + Delta-G solvation = -2835.496718 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54596 -37.60712 -34.00406 -32.92266 -32.47902 -31.29946 -29.26386 -28.59010 -25.64419 -23.96648 -23.35529 -21.84784 -21.16206 -19.93101 -19.17205 -16.69377 -15.98712 -15.64345 -14.92275 -14.56455 -14.34015 -13.85589 -13.78366 -13.35537 -13.25474 -13.18619 -12.84294 -12.54218 -12.16410 -11.84201 -11.76304 -11.39830 -11.07878 -10.93743 -10.79578 -10.67340 -10.62683 -10.46501 -10.27515 -10.19823 -9.84782 -9.51493 -8.85975 -8.52538 -8.32549 -8.21365 -7.75860 -5.99588 -4.12223 1.77898 1.88325 3.32809 3.37678 3.39888 4.19952 4.42639 4.87128 5.10627 5.17286 5.32272 5.43273 5.49300 5.54441 5.58641 5.63748 5.69282 5.72345 5.87269 5.99179 6.05538 6.11293 6.12141 6.18115 6.29241 6.34685 6.45160 6.48020 6.56794 6.65244 6.72792 6.83972 6.86016 6.89982 6.91221 7.04934 7.25104 7.48998 7.53265 7.90770 8.29761 8.79285 9.14456 9.58091 11.07573 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.007007 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.064379 B = 3995.314101 C = 4536.902499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.132 4.132 7 C -0.083 4.083 8 C -0.057 4.057 9 C 0.121 3.879 10 H 0.054 0.946 11 C -0.139 4.139 12 C -0.120 4.120 13 C -0.144 4.144 14 C 0.221 3.779 15 H 0.013 0.987 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.079 3.921 19 N -0.857 5.857 20 Si 0.890 3.110 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 O -0.349 6.349 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 -5.597 8.779 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.101 4.101 8 C -0.057 4.057 9 C 0.062 3.938 10 H 0.072 0.928 11 C -0.177 4.177 12 C -0.158 4.158 13 C -0.182 4.182 14 C 0.165 3.835 15 H 0.030 0.970 16 C -0.565 4.565 17 H 0.081 0.919 18 C -0.127 4.127 19 N -0.493 5.493 20 Si 0.717 3.283 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 O -0.268 6.268 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.884 -5.341 8.924 11.949 hybrid contribution -0.269 0.608 -0.541 0.857 sum 5.614 -4.732 8.384 11.145 Atomic orbital electron populations 1.21766 0.94693 1.01531 1.02621 1.20565 0.96408 0.93002 1.02323 1.19643 0.99739 0.96249 0.92548 1.20825 1.01567 0.95278 0.96856 1.20983 1.01243 0.94926 0.97628 1.21121 1.01506 0.99654 0.92715 1.21140 0.96198 0.94344 0.98416 1.19720 0.97693 0.94595 0.93697 1.20640 0.94573 0.91041 0.87592 0.92818 1.22155 0.99319 0.99306 0.96943 1.21621 1.00107 0.98294 0.95738 1.22266 1.01151 0.97006 0.97799 1.19683 0.89465 0.93507 0.80805 0.96958 1.20947 1.14941 1.16182 1.04439 0.91903 1.25055 0.95676 0.97175 0.94805 1.70026 1.19357 1.37286 1.22626 0.86712 0.78040 0.82404 0.81116 1.20138 1.21214 1.20093 1.88348 1.86824 1.30425 1.21202 0.92894 0.91540 0.92752 0.90835 0.91675 0.86815 0.86901 0.86676 0.84947 0.91801 0.92548 0.93092 0.92679 0.92487 0.92508 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.09 -1.20 5.38 -27.89 -0.15 -1.35 16 3 C -0.08 -1.34 5.13 -104.62 -0.54 -1.88 16 4 C -0.13 -1.88 9.69 -39.58 -0.38 -2.27 16 5 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 6 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 7 C -0.08 -1.60 9.35 -39.58 -0.37 -1.97 16 8 C -0.06 -1.09 5.06 -104.62 -0.53 -1.62 16 9 C 0.12 2.48 2.17 -27.83 -0.06 2.42 16 10 H 0.05 1.14 5.77 -51.93 -0.30 0.84 16 11 C -0.14 -2.48 5.25 -26.59 -0.14 -2.62 16 12 C -0.12 -2.12 6.03 -26.55 -0.16 -2.28 16 13 C -0.14 -3.05 5.36 -26.59 -0.14 -3.19 16 14 C 0.22 5.66 2.50 -27.83 -0.07 5.59 16 15 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 16 C -0.53 -14.76 8.79 -34.44 -0.30 -15.06 16 17 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 18 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 19 N -0.86 -25.23 12.84 55.43 0.71 -24.52 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 O -0.35 -8.86 8.30 -35.23 -0.29 -9.16 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.14 7.09 -51.93 -0.37 0.77 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.04 5.65 -51.93 -0.29 0.75 16 29 H 0.06 0.76 8.06 -51.92 -0.42 0.35 16 30 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.13 2.79 7.37 -52.49 -0.39 2.40 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.87 6.91 -51.93 -0.36 0.51 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -29.86 318.09 -9.50 -39.36 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.32 Total: 1.87 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -3.38 Total: -28.69 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.29 Total: -9.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.86 -9.50 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384068349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.448 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds