Wall clock time and date at job start Mon Mar 30 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50691 * 109.47109 * 2 1 4 4 C 1.38260 * 120.00718 * 93.83838 * 3 2 1 5 5 C 1.38211 * 120.00251 * 180.27429 * 4 3 2 6 6 C 1.38252 * 120.00222 * 359.74954 * 5 4 3 7 7 C 1.38217 * 120.00028 * 359.97438 * 6 5 4 8 8 C 1.38221 * 120.00011 * 273.58865 * 3 2 1 9 9 C 1.50701 * 119.99642 * 359.97438 * 8 3 2 10 10 H 1.08997 * 109.48216 * 33.86639 * 9 8 3 11 11 C 1.53099 * 109.47783 * 273.83196 * 9 8 3 12 12 C 1.53178 * 109.15957 * 182.40712 * 11 9 8 13 13 C 1.53177 * 109.03677 * 56.98381 * 12 11 9 14 14 C 1.53097 * 109.16495 * 303.01873 * 13 12 11 15 15 H 1.09009 * 109.47368 * 297.62934 * 14 13 12 16 16 C 1.50699 * 109.49435 * 177.60072 * 14 13 12 17 17 H 1.07997 * 119.99351 * 0.02562 * 16 14 13 18 18 C 1.37872 * 119.99973 * 180.02562 * 16 14 13 19 19 N 1.31513 * 120.00311 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99831 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47454 * 59.99603 * 20 18 16 22 22 H 1.48498 * 109.47120 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47470 * 299.99436 * 20 18 16 24 24 O 1.42900 * 109.41512 * 57.60439 * 14 13 12 25 25 H 1.09004 * 109.47194 * 294.69416 * 1 2 3 26 26 H 1.08997 * 109.47193 * 54.69391 * 1 2 3 27 27 H 1.09001 * 109.47180 * 174.69462 * 1 2 3 28 28 H 1.08991 * 109.47233 * 239.99631 * 2 1 3 29 29 H 1.09008 * 109.46871 * 119.99662 * 2 1 3 30 30 H 1.08004 * 119.99565 * 0.05037 * 4 3 2 31 31 H 1.08003 * 119.99374 * 179.77154 * 5 4 3 32 32 H 1.08000 * 120.00491 * 180.02562 * 6 5 4 33 33 H 1.07995 * 120.00388 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.52211 * 302.31332 * 11 9 8 35 35 H 1.08995 * 109.52383 * 62.50641 * 11 9 8 36 36 H 1.09006 * 109.53982 * 176.84491 * 12 11 9 37 37 H 1.08993 * 109.55003 * 297.02715 * 12 11 9 38 38 H 1.08999 * 109.52448 * 183.10936 * 13 12 11 39 39 H 1.09007 * 109.52622 * 62.91973 * 13 12 11 40 40 H 0.97001 * 120.00533 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3383 2.0459 1.1946 5 6 2.7936 3.3509 1.1949 6 6 2.9480 4.0295 0.0003 7 6 2.6475 3.4027 -1.1944 8 6 2.1920 2.0973 -1.1947 9 6 1.8644 1.4138 -2.4972 10 1 1.0255 0.7337 -2.3499 11 6 3.0837 0.6240 -2.9801 12 6 2.7630 -0.0182 -4.3333 13 6 2.3516 1.0775 -5.3214 14 6 1.1606 1.8500 -4.7481 15 1 0.3126 1.1753 -4.6303 16 6 0.7870 2.9677 -5.6873 17 1 1.3426 3.1128 -6.6019 18 6 -0.2642 3.8048 -5.3789 19 7 -0.9411 3.6278 -4.2654 20 14 -0.7269 5.1907 -6.5428 21 1 -1.0953 4.6244 -7.8652 22 1 -1.8822 5.9396 -5.9863 23 1 0.4286 6.1097 -6.7025 24 8 1.5160 2.3952 -3.4759 25 1 -0.3634 0.4293 0.9337 26 1 -0.3633 0.5939 -0.8386 27 1 -0.3633 -1.0233 -0.0950 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.2182 1.5157 2.1278 31 1 3.0292 3.8403 2.1284 32 1 3.3042 5.0490 0.0004 33 1 2.7677 3.9328 -2.1276 34 1 3.9341 1.2971 -3.0888 35 1 3.3240 -0.1540 -2.2556 36 1 3.6455 -0.5358 -4.7095 37 1 1.9458 -0.7297 -4.2149 38 1 2.0685 0.6239 -6.2712 39 1 3.1872 1.7599 -5.4774 40 1 -1.6809 4.2165 -4.0485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384068349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:34 Heat of formation + Delta-G solvation = -61.175854 kcal Electronic energy + Delta-G solvation = -20167.406186 eV Core-core repulsion = 17331.243163 eV Total energy + Delta-G solvation = -2836.163023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95534 -39.21769 -35.32775 -34.79849 -34.14575 -32.96197 -30.66347 -30.03443 -27.53509 -25.45352 -24.70252 -23.56948 -22.55970 -21.24168 -20.82711 -18.70839 -17.42403 -17.12559 -16.64794 -16.13158 -16.08625 -15.34877 -15.25411 -14.83299 -14.57930 -14.56866 -14.33189 -14.03745 -13.84597 -13.31294 -12.99883 -12.86631 -12.77334 -12.59195 -12.49651 -12.25347 -12.08724 -11.97862 -11.81737 -11.70454 -11.57865 -11.09336 -10.85113 -10.56136 -9.87730 -9.59122 -9.31468 -8.14977 -6.35733 0.50284 0.58326 1.38509 1.41552 1.48953 2.39215 2.88988 3.02969 3.55150 3.94174 3.96233 4.01799 4.12105 4.15732 4.26191 4.33727 4.36048 4.45824 4.51924 4.55004 4.68123 4.73815 4.79000 4.83993 4.96453 5.00599 5.07369 5.13980 5.15337 5.21305 5.23669 5.26464 5.33866 5.41933 5.54202 5.65345 5.71766 5.77047 5.90091 6.21018 6.21869 6.66944 7.22768 7.40883 8.92118 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.007007 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.064379 B = 3995.314101 C = 4536.902499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.137 4.137 7 C -0.115 4.115 8 C -0.085 4.085 9 C 0.117 3.883 10 H 0.041 0.959 11 C -0.131 4.131 12 C -0.114 4.114 13 C -0.138 4.138 14 C 0.218 3.782 15 H -0.023 1.023 16 C -0.553 4.553 17 H 0.064 0.936 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.959 3.041 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.271 1.271 24 O -0.379 6.379 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 -6.435 10.618 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.155 4.155 7 C -0.133 4.133 8 C -0.085 4.085 9 C 0.059 3.941 10 H 0.058 0.942 11 C -0.168 4.168 12 C -0.152 4.152 13 C -0.175 4.175 14 C 0.162 3.838 15 H -0.006 1.006 16 C -0.590 4.590 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.531 5.531 20 Si 0.783 3.217 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.196 1.196 24 O -0.299 6.299 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.170 0.830 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.010 -6.190 10.752 14.250 hybrid contribution -0.613 0.851 -1.021 1.464 sum 6.397 -5.339 9.731 12.810 Atomic orbital electron populations 1.21725 0.95128 1.02089 1.01290 1.20624 0.95892 0.91780 1.03781 1.19937 0.99307 0.97427 0.92054 1.21292 0.99729 0.95416 0.97513 1.21425 0.99421 0.94925 0.98198 1.21342 1.01207 1.00587 0.92353 1.21022 0.98951 0.94966 0.98409 1.19760 0.99621 0.95013 0.94088 1.20799 0.95295 0.90451 0.87566 0.94155 1.22085 0.97531 0.99528 0.97703 1.21606 1.01663 0.97187 0.94707 1.22121 0.98927 0.97612 0.98887 1.19534 0.90238 0.92678 0.81331 1.00558 1.21399 1.15362 1.16974 1.05270 0.91786 1.25919 0.95585 0.99743 0.96423 1.70180 1.19930 1.38423 1.24556 0.85626 0.77715 0.79082 0.79276 1.18761 1.20813 1.19642 1.88244 1.87163 1.32575 1.21885 0.91825 0.95763 0.90688 0.91295 0.88194 0.83049 0.83084 0.84945 0.88528 0.92480 0.89509 0.89631 0.92213 0.91804 0.93101 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.67 71.98 0.70 -3.26 16 2 C -0.08 -2.16 5.38 29.85 0.16 -2.00 16 3 C -0.09 -2.73 5.13 -19.87 -0.10 -2.84 16 4 C -0.12 -3.18 9.69 22.27 0.22 -2.96 16 5 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 6 C -0.14 -4.38 10.05 22.27 0.22 -4.15 16 7 C -0.12 -4.64 9.35 22.27 0.21 -4.44 16 8 C -0.08 -3.33 5.06 -19.86 -0.10 -3.43 16 9 C 0.12 5.03 2.17 29.88 0.06 5.10 16 10 H 0.04 1.81 5.77 -2.39 -0.01 1.79 16 11 C -0.13 -4.62 5.25 30.69 0.16 -4.46 16 12 C -0.11 -3.95 6.03 30.71 0.19 -3.77 16 13 C -0.14 -5.94 5.36 30.69 0.16 -5.77 16 14 C 0.22 11.78 2.50 29.88 0.07 11.86 16 15 H -0.02 -1.37 8.14 -2.38 -0.02 -1.39 16 16 C -0.55 -32.28 8.79 25.60 0.23 -32.05 16 17 H 0.06 3.60 7.74 -2.91 -0.02 3.57 16 18 C 0.03 1.52 5.40 84.65 0.46 1.98 16 19 N -0.89 -55.22 12.84 21.45 0.28 -54.94 16 20 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 O -0.38 -20.50 8.30 -148.98 -1.24 -21.73 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.02 0.84 7.09 -2.39 -0.02 0.83 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.83 5.65 -2.39 -0.01 1.81 16 29 H 0.10 1.90 8.06 -2.38 -0.02 1.88 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 33 H 0.10 4.46 7.37 -2.91 -0.02 4.44 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.09 2.53 6.91 -2.39 -0.02 2.51 16 36 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -69.19 318.09 4.92 -64.26 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.00 Total: 18.45 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 2.86 Total: -53.16 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.28 Total: -54.94 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -1.24 Total: -21.73 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.19 4.92 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384068349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.087 kcal (2) G-P(sol) polarization free energy of solvation -69.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds