Wall clock time and date at job start Mon Mar 30 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47348 * 2 1 4 4 C 1.38255 * 120.00238 * 265.00010 * 3 2 1 5 5 C 1.38212 * 120.00284 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.99859 * 0.02562 * 5 4 3 7 7 C 1.38215 * 120.00294 * 359.97438 * 6 5 4 8 8 C 1.38217 * 120.00022 * 84.97032 * 3 2 1 9 9 C 1.50706 * 119.99801 * 0.02911 * 8 3 2 10 10 H 1.08995 * 109.48004 * 324.92775 * 9 8 3 11 11 C 1.53092 * 109.47936 * 84.95100 * 9 8 3 12 12 C 1.53184 * 109.15963 * 177.59024 * 11 9 8 13 13 C 1.53181 * 109.03602 * 303.02022 * 12 11 9 14 14 C 1.53091 * 109.16434 * 56.97910 * 13 12 11 15 15 H 1.08994 * 109.48157 * 182.39574 * 14 13 12 16 16 C 1.50707 * 109.47666 * 62.37360 * 14 13 12 17 17 H 1.07993 * 120.00230 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99503 * 179.97438 * 16 14 13 19 19 N 1.31515 * 120.00219 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99771 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47117 * 90.00504 * 20 18 16 22 22 H 1.48500 * 109.47331 * 210.00353 * 20 18 16 23 23 H 1.48495 * 109.47423 * 330.00501 * 20 18 16 24 24 O 1.42900 * 109.41861 * 302.39507 * 14 13 12 25 25 H 1.09002 * 109.47333 * 60.00212 * 1 2 3 26 26 H 1.09005 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47763 * 300.00007 * 1 2 3 28 28 H 1.09004 * 109.47488 * 239.99739 * 2 1 3 29 29 H 1.09002 * 109.47333 * 119.99788 * 2 1 3 30 30 H 1.08000 * 119.99755 * 359.97379 * 4 3 2 31 31 H 1.08002 * 119.99776 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.00399 * 179.97438 * 6 5 4 33 33 H 1.07995 * 120.00164 * 179.70679 * 7 6 5 34 34 H 1.08997 * 109.52210 * 297.49184 * 11 9 8 35 35 H 1.08992 * 109.52241 * 57.62230 * 11 9 8 36 36 H 1.08996 * 109.54421 * 62.88630 * 12 11 9 37 37 H 1.08993 * 109.54364 * 183.15387 * 12 11 9 38 38 H 1.08995 * 109.52175 * 176.88615 * 13 12 11 39 39 H 1.09002 * 109.51809 * 297.07624 * 13 12 11 40 40 H 0.97003 * 119.99913 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0378 -1.1927 5 6 2.8214 3.3410 -1.1928 6 6 2.9535 4.0275 0.0000 7 6 2.6248 3.4108 1.1924 8 6 2.1638 2.1073 1.1924 9 6 1.8053 1.4348 2.4925 10 1 0.9564 0.7694 2.3356 11 6 3.0029 0.6246 2.9954 12 6 2.6515 -0.0066 4.3462 13 6 2.2463 1.1002 5.3245 14 6 1.0780 1.8921 4.7316 15 1 0.8131 2.7078 5.4044 16 6 -0.1090 0.9804 4.5555 17 1 -0.0377 -0.0596 4.8375 18 6 -1.2861 1.4742 4.0342 19 7 -1.3729 2.7406 3.6904 20 14 -2.7572 0.3441 3.8152 21 1 -3.5847 0.3641 5.0481 22 1 -3.5721 0.8097 2.6644 23 1 -2.2843 -1.0401 3.5589 24 8 1.4612 2.4260 3.4627 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2584 1.5014 -2.1244 31 1 3.0787 3.8228 -2.1245 32 1 3.3135 5.0457 0.0001 33 1 2.7324 3.9455 2.1245 34 1 3.2391 -0.1604 2.2770 35 1 3.8642 1.2822 3.1127 36 1 1.8220 -0.7022 4.2188 37 1 3.5187 -0.5389 4.7366 38 1 1.9415 0.6554 6.2717 39 1 3.0921 1.7677 5.4899 40 1 -2.2011 3.0881 3.3240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384068353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:36 Heat of formation + Delta-G solvation = -44.356305 kcal Electronic energy + Delta-G solvation = -20636.256769 eV Core-core repulsion = 17800.823096 eV Total energy + Delta-G solvation = -2835.433672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.47997 -37.62943 -33.87546 -32.69252 -32.38017 -31.28419 -29.15943 -28.42558 -25.62255 -23.84755 -23.26045 -22.06010 -21.10460 -19.88404 -18.92834 -16.44089 -16.10649 -15.29837 -14.99578 -14.64461 -14.14592 -13.70750 -13.56718 -13.31168 -13.20311 -13.04417 -12.78569 -12.48821 -11.87978 -11.77777 -11.67099 -11.27754 -11.21728 -10.98689 -10.76515 -10.65131 -10.52851 -10.43928 -10.16945 -10.13674 -9.68121 -9.49441 -8.74546 -8.44800 -8.27808 -8.15272 -7.64500 -5.98461 -4.13635 1.85090 1.93759 3.26629 3.35153 3.36448 4.26638 4.39773 5.00418 5.20750 5.27462 5.36765 5.50950 5.57346 5.60508 5.75913 5.79630 5.81928 5.85492 5.99211 6.11596 6.18024 6.25321 6.28592 6.35677 6.42872 6.48769 6.54849 6.57424 6.72364 6.76559 6.89340 6.92592 6.97084 7.05695 7.08313 7.16708 7.35283 7.54920 7.71447 7.87818 8.22399 8.83060 9.09398 9.58488 11.05584 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.008873 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.022987 B = 3154.720207 C = 3655.240137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.080 4.080 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.133 4.133 7 C -0.089 4.089 8 C -0.054 4.054 9 C 0.139 3.861 10 H 0.080 0.920 11 C -0.138 4.138 12 C -0.108 4.108 13 C -0.142 4.142 14 C 0.213 3.787 15 H 0.061 0.939 16 C -0.558 4.558 17 H 0.057 0.943 18 C 0.082 3.918 19 N -0.855 5.855 20 Si 0.875 3.125 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 O -0.367 6.367 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -2.686 -6.917 10.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.081 4.081 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.107 4.107 8 C -0.054 4.054 9 C 0.081 3.919 10 H 0.097 0.903 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.180 4.180 14 C 0.157 3.843 15 H 0.078 0.922 16 C -0.596 4.596 17 H 0.075 0.925 18 C -0.124 4.124 19 N -0.491 5.491 20 Si 0.703 3.297 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 O -0.286 6.286 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.260 -2.337 -7.026 10.370 hybrid contribution -0.953 -0.766 -0.109 1.228 sum 6.307 -3.104 -7.135 10.016 Atomic orbital electron populations 1.21783 0.94682 1.01412 1.02934 1.20565 0.96464 0.92904 1.02289 1.19667 0.99480 0.96366 0.92538 1.20837 1.01386 0.95306 0.96898 1.20954 1.01589 0.94954 0.97583 1.21089 1.01647 0.99534 0.92826 1.21075 0.96894 0.94617 0.98133 1.19878 0.96782 0.94434 0.94303 1.20422 0.95120 0.90575 0.85813 0.90284 1.22127 0.98934 0.99169 0.97316 1.21447 0.99816 0.98291 0.95030 1.22186 0.99637 0.97776 0.98419 1.19701 0.89335 0.93366 0.81915 0.92176 1.21518 0.96906 0.96365 1.44841 0.92529 1.24994 0.98090 0.94668 0.94683 1.70050 1.26074 1.12795 1.40183 0.86873 0.83426 0.81515 0.77916 1.20570 1.21068 1.19697 1.87893 1.86571 1.31540 1.22567 0.93092 0.92855 0.91059 0.91862 0.90605 0.86864 0.86994 0.86822 0.85374 0.92719 0.92699 0.91296 0.94054 0.92582 0.94091 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.72 37.15 0.36 -2.16 16 2 C -0.09 -1.34 5.38 -27.89 -0.15 -1.49 16 3 C -0.08 -1.41 5.13 -104.62 -0.54 -1.95 16 4 C -0.13 -1.97 9.68 -39.58 -0.38 -2.35 16 5 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 6 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 7 C -0.09 -1.71 9.35 -39.58 -0.37 -2.08 16 8 C -0.05 -1.07 5.07 -104.62 -0.53 -1.60 16 9 C 0.14 3.00 1.90 -27.83 -0.05 2.95 16 10 H 0.08 1.88 4.57 -51.93 -0.24 1.64 16 11 C -0.14 -2.59 5.25 -26.59 -0.14 -2.73 16 12 C -0.11 -2.05 5.78 -26.54 -0.15 -2.21 16 13 C -0.14 -2.95 5.59 -26.59 -0.15 -3.10 16 14 C 0.21 5.29 3.16 -27.83 -0.09 5.20 16 15 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 16 C -0.56 -14.74 6.59 -34.44 -0.23 -14.96 16 17 H 0.06 1.47 6.87 -52.49 -0.36 1.11 16 18 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 19 N -0.86 -24.53 12.84 55.43 0.71 -23.82 16 20 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 O -0.37 -9.14 8.48 -35.23 -0.30 -9.44 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.45 6.80 -51.93 -0.35 1.10 16 28 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.08 1.22 5.60 -51.93 -0.29 0.93 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.13 2.55 7.35 -52.49 -0.39 2.17 16 34 H 0.05 0.92 6.76 -51.93 -0.35 0.57 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.38 6.85 -51.93 -0.36 1.02 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -28.53 312.60 -9.32 -37.86 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.12 Total: 4.24 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -3.31 Total: -29.31 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.71 Total: -23.82 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.30 Total: -9.44 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.53 -9.32 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384068353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.500 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds