Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.46835 * 2 1 4 4 C 1.38248 * 120.00372 * 277.03700 * 3 2 1 5 5 C 1.38216 * 120.00095 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00036 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.00171 * 359.80809 * 6 5 4 8 8 C 1.38215 * 119.99701 * 97.06541 * 3 2 1 9 9 C 1.50697 * 119.99960 * 359.97438 * 8 3 2 10 10 H 1.08993 * 109.49441 * 33.23508 * 9 8 3 11 11 C 1.53096 * 109.48353 * 273.20580 * 9 8 3 12 12 C 1.53178 * 109.16653 * 182.41031 * 11 9 8 13 13 C 1.53173 * 109.03595 * 56.97980 * 12 11 9 14 14 C 1.53091 * 109.16555 * 303.02237 * 13 12 11 15 15 H 1.08996 * 109.49286 * 177.59971 * 14 13 12 16 16 C 1.50707 * 109.48112 * 297.62613 * 14 13 12 17 17 H 1.07999 * 119.99764 * 359.94346 * 16 14 13 18 18 C 1.37873 * 120.00179 * 179.97438 * 16 14 13 19 19 N 1.31519 * 119.99979 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99907 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47079 * 269.99577 * 20 18 16 22 22 H 1.48497 * 109.47012 * 29.99804 * 20 18 16 23 23 H 1.48503 * 109.47049 * 149.99817 * 20 18 16 24 24 O 1.42902 * 109.48180 * 153.26555 * 9 8 3 25 25 H 1.09001 * 109.47026 * 182.84524 * 1 2 3 26 26 H 1.08999 * 109.46833 * 302.83591 * 1 2 3 27 27 H 1.08993 * 109.47231 * 62.83798 * 1 2 3 28 28 H 1.08998 * 109.46469 * 240.00495 * 2 1 3 29 29 H 1.08994 * 109.47331 * 120.00720 * 2 1 3 30 30 H 1.07997 * 120.00432 * 359.97438 * 4 3 2 31 31 H 1.08008 * 120.00176 * 179.97438 * 5 4 3 32 32 H 1.08005 * 120.00137 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.00544 * 180.23545 * 7 6 5 34 34 H 1.09001 * 109.51950 * 302.31577 * 11 9 8 35 35 H 1.09003 * 109.51839 * 62.49839 * 11 9 8 36 36 H 1.08995 * 109.54265 * 176.85177 * 12 11 9 37 37 H 1.09007 * 109.53968 * 297.11594 * 12 11 9 38 38 H 1.09000 * 109.52155 * 183.11223 * 13 12 11 39 39 H 1.08997 * 109.52442 * 62.92672 * 13 12 11 40 40 H 0.96993 * 119.99726 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1244 2.1215 -1.1882 5 6 2.5856 3.4244 -1.1882 6 6 2.9543 4.0272 0.0001 7 6 2.8579 3.3283 1.1886 8 6 2.4014 2.0232 1.1879 9 6 2.3011 1.2594 2.4831 10 1 2.5056 0.2046 2.3001 11 6 0.8909 1.4136 3.0589 12 6 0.8145 0.6850 4.4041 13 6 1.8889 1.2485 5.3392 14 6 3.2606 1.1008 4.6754 15 1 4.0245 1.5387 5.3178 16 6 3.5608 -0.3605 4.4619 17 1 2.8459 -1.1093 4.7695 18 6 4.7485 -0.7417 3.8745 19 7 5.6192 0.1701 3.5000 20 14 5.1203 -2.5530 3.6093 21 1 5.8234 -3.0935 4.8004 22 1 3.8499 -3.2944 3.4055 23 1 5.9834 -2.7109 2.4112 24 8 3.2536 1.7748 3.4154 25 1 -0.3633 -1.0264 0.0510 26 1 -0.3633 0.5572 0.8635 27 1 -0.3633 0.4691 -0.9143 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8368 1.6505 -2.1166 31 1 2.6579 3.9717 -2.1165 32 1 3.3150 5.0453 0.0001 33 1 3.1423 3.8005 2.1173 34 1 0.6705 2.4711 3.2043 35 1 0.1665 0.9811 2.3687 36 1 -0.1701 0.8376 4.8461 37 1 0.9861 -0.3807 4.2519 38 1 1.8783 0.6980 6.2799 39 1 1.6887 2.3027 5.5307 40 1 5.4260 1.1106 3.6374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384068355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = -47.451548 kcal Electronic energy + Delta-G solvation = -20586.651996 eV Core-core repulsion = 17751.084104 eV Total energy + Delta-G solvation = -2835.567892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.59356 -37.81175 -34.02033 -32.85474 -32.53926 -31.26681 -29.16726 -28.55583 -25.24862 -23.66329 -23.48698 -22.34528 -21.21286 -19.93644 -19.14091 -16.69453 -16.30806 -15.58669 -14.99891 -14.41338 -14.07055 -13.89770 -13.67223 -13.56462 -13.33736 -13.21750 -12.79442 -12.51309 -12.17079 -11.72352 -11.70724 -11.48588 -11.15243 -11.04294 -10.91255 -10.76427 -10.49333 -10.30816 -10.18455 -10.10160 -9.76115 -9.40932 -8.80740 -8.39949 -8.32444 -8.13908 -7.73571 -6.30573 -4.12351 1.78802 1.86120 3.41556 3.43762 3.60093 4.19630 4.52124 4.88497 5.11463 5.20906 5.36091 5.42793 5.44493 5.53391 5.63961 5.71036 5.75200 5.76262 5.85675 5.93104 6.08544 6.12671 6.16673 6.24331 6.31999 6.37481 6.42296 6.53001 6.56399 6.67731 6.80863 6.83250 6.89039 6.95262 6.99335 7.03551 7.26245 7.47310 7.50073 8.05356 8.38404 8.78360 8.92113 9.69717 11.08444 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.008193 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.278781 B = 3416.846469 C = 3618.011089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.077 4.077 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.132 4.132 7 C -0.092 4.092 8 C -0.058 4.058 9 C 0.144 3.856 10 H 0.080 0.920 11 C -0.140 4.140 12 C -0.108 4.108 13 C -0.134 4.134 14 C 0.195 3.805 15 H 0.053 0.947 16 C -0.635 4.635 17 H 0.050 0.950 18 C 0.035 3.965 19 N -0.890 5.890 20 Si 1.060 2.940 21 H -0.288 1.288 22 H -0.288 1.288 23 H -0.284 1.284 24 O -0.388 6.388 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 2.969 -6.544 11.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.077 4.077 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.150 4.150 7 C -0.110 4.110 8 C -0.058 4.058 9 C 0.086 3.914 10 H 0.098 0.902 11 C -0.177 4.177 12 C -0.145 4.145 13 C -0.172 4.172 14 C 0.140 3.860 15 H 0.070 0.930 16 C -0.673 4.673 17 H 0.069 0.931 18 C -0.174 4.174 19 N -0.524 5.524 20 Si 0.888 3.112 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.210 1.210 24 O -0.308 6.308 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.926 2.095 -7.172 10.893 hybrid contribution -1.224 0.887 0.724 1.676 sum -9.151 2.982 -6.448 11.585 Atomic orbital electron populations 1.21844 0.95111 1.01516 1.01906 1.20643 0.95853 0.93189 1.03494 1.19636 0.99562 0.95998 0.92493 1.20837 1.01529 0.94784 0.97056 1.20974 1.00900 0.95369 0.97640 1.21081 1.01344 0.99746 0.92843 1.21047 0.97627 0.94170 0.98146 1.19845 0.97373 0.94263 0.94336 1.20403 0.87819 0.97396 0.85786 0.90204 1.22213 0.97898 1.00116 0.97481 1.21442 0.97115 1.00925 0.95043 1.22038 0.98212 0.98366 0.98617 1.19865 0.91277 0.93192 0.81674 0.92959 1.22314 1.06486 0.91745 1.46722 0.93129 1.25684 0.92625 1.05901 0.93229 1.70605 1.36637 1.03667 1.41518 0.83698 0.75748 0.74775 0.76954 1.21424 1.21453 1.20969 1.87817 1.57713 1.59617 1.25633 0.92598 0.92056 0.93033 0.91376 0.89815 0.86722 0.86861 0.86750 0.85604 0.92782 0.91887 0.93943 0.91149 0.92522 0.94189 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.83 37.16 0.37 -1.56 16 2 C -0.09 -1.49 5.76 -27.88 -0.16 -1.65 16 3 C -0.08 -1.34 5.13 -104.63 -0.54 -1.88 16 4 C -0.12 -1.91 9.73 -39.59 -0.39 -2.30 16 5 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 6 C -0.13 -2.12 10.05 -39.59 -0.40 -2.52 16 7 C -0.09 -1.74 9.35 -39.58 -0.37 -2.11 16 8 C -0.06 -1.15 5.06 -104.62 -0.53 -1.68 16 9 C 0.14 3.11 2.09 -27.83 -0.06 3.05 16 10 H 0.08 1.93 4.98 -51.93 -0.26 1.67 16 11 C -0.14 -2.62 5.40 -26.59 -0.14 -2.76 16 12 C -0.11 -2.06 5.78 -26.55 -0.15 -2.21 16 13 C -0.13 -2.82 5.59 -26.59 -0.15 -2.97 16 14 C 0.20 4.87 2.76 -27.83 -0.08 4.79 16 15 H 0.05 1.40 8.01 -51.93 -0.42 0.98 16 16 C -0.63 -17.07 6.59 -34.44 -0.23 -17.30 16 17 H 0.05 1.35 6.87 -52.49 -0.36 0.99 16 18 C 0.03 0.97 5.40 -17.82 -0.10 0.87 16 19 N -0.89 -26.66 13.53 55.43 0.75 -25.91 16 20 Si 1.06 24.86 29.90 -169.99 -5.08 19.78 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 O -0.39 -9.58 7.81 -35.23 -0.28 -9.86 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.84 5.37 -51.93 -0.28 0.56 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 29 H 0.08 1.50 5.75 -51.93 -0.30 1.20 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.13 2.45 7.40 -52.49 -0.39 2.06 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.05 5.28 -51.93 -0.27 0.78 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.43 6.85 -51.93 -0.36 1.08 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.28 8.64 6.47 -40.82 -0.26 8.37 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -29.46 309.27 -9.18 -38.65 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.92 Total: 5.24 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: -3.32 Total: -32.56 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.75 Total: -25.91 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.28 Total: -9.86 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.46 -9.18 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384068355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.806 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds