Wall clock time and date at job start Mon Mar 30 2020 07:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00069 * 2 1 4 4 C 1.53001 * 109.47096 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47117 * 240.00130 * 3 2 1 6 6 C 1.53001 * 109.47319 * 119.99844 * 3 2 1 7 7 N 1.46498 * 109.47126 * 180.02562 * 6 3 2 8 8 C 1.39858 * 119.99811 * 180.02562 * 7 6 3 9 9 C 1.39597 * 119.83889 * 359.97438 * 8 7 6 10 10 C 1.38057 * 120.54825 * 179.97438 * 9 8 7 11 11 C 1.38738 * 120.22062 * 0.02562 * 10 9 8 12 12 N 1.38867 * 120.16444 * 179.97438 * 11 10 9 13 13 C 1.41568 * 119.67472 * 0.02562 * 11 10 9 14 14 C 1.41022 * 120.27025 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99839 * 25.84246 * 14 13 11 16 16 C 1.39886 * 120.00172 * 205.84636 * 14 13 11 17 17 N 1.30903 * 119.99916 * 17.10174 * 16 14 13 18 18 Si 1.86799 * 119.99971 * 197.10522 * 16 14 13 19 19 H 1.48504 * 109.47048 * 94.49815 * 18 16 14 20 20 H 1.48493 * 109.47403 * 214.50088 * 18 16 14 21 21 H 1.48506 * 109.47112 * 334.50068 * 18 16 14 22 22 C 1.38003 * 119.83532 * 179.71875 * 8 7 6 23 23 H 1.07998 * 119.99929 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.99708 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00153 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47383 * 180.02562 * 4 3 2 27 27 H 1.09009 * 109.47019 * 299.99884 * 4 3 2 28 28 H 1.09001 * 109.47689 * 59.99989 * 4 3 2 29 29 H 1.09007 * 109.46774 * 299.99460 * 5 3 2 30 30 H 1.08994 * 109.47391 * 59.99493 * 5 3 2 31 31 H 1.09001 * 109.47448 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46862 * 299.99640 * 6 3 2 33 33 H 1.08997 * 109.47439 * 59.99984 * 6 3 2 34 34 H 0.97005 * 120.00179 * 359.97438 * 7 6 3 35 35 H 1.07998 * 119.72621 * 359.97438 * 9 8 7 36 36 H 1.07994 * 119.88982 * 180.02562 * 10 9 8 37 37 H 0.96994 * 119.99872 * 359.97438 * 12 11 10 38 38 H 0.97004 * 120.00054 * 180.02562 * 12 11 10 39 39 H 0.96998 * 119.99664 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.11959 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9432 1.3862 1.2493 7 7 3.6752 2.6552 1.2495 8 6 4.5496 2.9578 2.2983 9 6 4.7219 2.0484 3.3433 10 6 5.5816 2.3319 4.3856 11 6 6.2850 3.5277 4.4051 12 7 7.1491 3.8119 5.4544 13 6 6.1166 4.4571 3.3507 14 6 6.8256 5.6761 3.3575 15 1 7.7655 5.7511 3.8842 16 6 6.3116 6.7882 2.6823 17 7 5.0499 6.8170 2.3345 18 14 7.4255 8.2319 2.2770 19 1 7.9595 8.0738 0.9003 20 1 6.6502 9.4953 2.3652 21 1 8.5524 8.2741 3.2432 22 6 5.2419 4.1516 2.2922 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.6143 3.4120 0.0002 27 1 0.4423 2.4105 -0.8892 28 1 0.4429 2.4102 0.8908 29 1 3.6515 0.5576 -1.2491 30 1 2.3165 1.3283 -2.1392 31 1 3.4885 2.3299 -1.2491 32 1 2.3164 1.3285 2.1392 33 1 3.6515 0.5577 1.2493 34 1 3.5540 3.2852 0.5219 35 1 4.1780 1.1154 3.3364 36 1 5.7071 1.6206 5.1884 37 1 7.2618 3.1739 6.1762 38 1 7.6394 4.6488 5.4658 39 1 4.6936 7.5880 1.8659 40 1 5.1089 4.8511 1.4801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385071884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:07 Heat of formation + Delta-G solvation = 34.037983 kcal Electronic energy + Delta-G solvation = -19243.204724 eV Core-core repulsion = 16443.463234 eV Total energy + Delta-G solvation = -2799.741490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.63143 -37.47451 -34.60196 -33.41967 -31.85442 -30.16368 -29.38720 -27.23364 -27.08409 -24.95191 -24.64725 -21.75334 -20.93602 -19.55560 -18.08195 -17.08583 -16.31503 -15.51062 -15.43025 -14.77113 -14.68358 -14.55279 -14.19154 -13.39110 -13.34684 -12.65503 -12.33034 -12.18914 -12.10137 -11.89813 -11.64641 -11.58797 -11.32311 -11.08555 -11.00653 -10.90234 -10.63518 -10.56838 -10.32349 -9.86896 -9.65989 -9.32602 -9.27643 -9.02451 -7.70728 -7.19336 -6.59889 -5.49051 -4.03553 2.28801 2.92913 3.15096 3.17791 3.33719 3.52137 4.05267 4.47795 4.83670 4.88500 4.92210 5.08603 5.34092 5.38587 5.46138 5.69986 5.78019 5.89560 5.91439 5.93707 6.09358 6.19635 6.23677 6.38121 6.40347 6.42086 6.62298 6.67799 6.81692 7.15627 7.19112 7.34579 7.52635 7.74080 7.91954 8.03388 8.15671 8.49381 8.79317 8.93932 8.97647 9.03393 9.29171 9.37754 10.39729 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.005247 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.774645 B = 5334.730927 C = 6296.194161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.050 4.050 4 C -0.142 4.142 5 C -0.135 4.135 6 C 0.155 3.845 7 N -0.760 5.760 8 C 0.179 3.821 9 C -0.255 4.255 10 C -0.152 4.152 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.096 3.904 14 C -0.466 4.466 15 H 0.071 0.929 16 C 0.078 3.922 17 N -0.800 5.800 18 Si 0.901 3.099 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.265 1.265 22 C -0.202 4.202 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.387 0.613 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -7.475 -4.753 10.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.154 4.154 3 C -0.051 4.051 4 C -0.199 4.199 5 C -0.192 4.192 6 C 0.029 3.971 7 N -0.396 5.396 8 C 0.080 3.920 9 C -0.279 4.279 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.091 3.909 14 C -0.497 4.497 15 H 0.089 0.911 16 C -0.138 4.138 17 N -0.427 5.427 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.226 4.226 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.221 0.779 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.199 0.801 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.605 -7.489 -4.868 10.545 hybrid contribution 0.521 0.922 -0.118 1.066 sum -5.084 -6.566 -4.987 9.686 Atomic orbital electron populations 1.23966 0.96143 1.01904 1.01855 1.22859 0.95813 0.97585 0.99112 1.19903 0.95529 0.93399 0.96247 1.21925 0.98680 0.97946 1.01339 1.21778 0.98963 1.02517 0.95938 1.20917 0.93176 0.87873 0.95092 1.44369 1.49576 1.19729 1.25923 1.17502 0.91931 0.94366 0.88182 1.19608 1.09351 1.00207 0.98732 1.19704 1.02268 0.96269 0.99427 1.17859 0.97265 0.95963 0.90628 1.41805 1.52355 1.23563 1.25464 1.16962 0.93167 0.91572 0.89182 1.19138 1.06238 0.94522 1.29788 0.91104 1.25734 0.94612 0.99441 0.94031 1.69894 1.12487 1.29737 1.30543 0.86437 0.80964 0.80341 0.79653 1.19691 1.20635 1.18923 1.20450 1.05159 0.95819 1.01194 0.88865 0.87887 0.87476 0.91869 0.92805 0.92313 0.92512 0.92966 0.91913 0.93602 0.93612 0.77891 0.89784 0.89852 0.80149 0.78363 0.91513 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 13.70 29.01 0.40 -1.69 16 2 C -0.14 -1.54 8.76 -36.03 -0.32 -1.86 16 3 C -0.05 -0.65 0.75 -155.66 -0.12 -0.76 16 4 C -0.14 -1.79 6.95 37.16 0.26 -1.53 16 5 C -0.13 -1.65 8.28 37.16 0.31 -1.34 16 6 C 0.16 2.49 3.78 -4.04 -0.02 2.48 16 7 N -0.76 -14.62 5.14 -58.64 -0.30 -14.92 16 8 C 0.18 4.21 6.64 -83.77 -0.56 3.65 16 9 C -0.26 -5.91 9.31 -39.14 -0.36 -6.27 16 10 C -0.15 -3.56 9.86 -39.46 -0.39 -3.95 16 11 C 0.08 2.06 6.79 -83.22 -0.56 1.50 16 12 N -0.89 -18.52 8.98 32.75 0.29 -18.23 16 13 C 0.10 2.58 5.57 -106.65 -0.59 1.99 16 14 C -0.47 -12.34 8.48 -37.91 -0.32 -12.67 16 15 H 0.07 1.79 6.70 -52.49 -0.35 1.44 16 16 C 0.08 1.98 5.14 -17.33 -0.09 1.89 16 17 N -0.80 -21.06 11.03 55.55 0.61 -20.45 16 18 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.20 -5.28 8.50 -38.75 -0.33 -5.61 16 23 H 0.09 0.82 8.06 -52.49 -0.42 0.40 16 24 H 0.10 1.05 5.69 -52.49 -0.30 0.75 16 25 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 26 H 0.06 0.87 6.86 -51.93 -0.36 0.52 16 27 H 0.05 0.59 7.50 -51.92 -0.39 0.20 16 28 H 0.06 0.75 7.50 -51.93 -0.39 0.36 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.83 6.86 -51.93 -0.36 0.47 16 32 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 33 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.39 7.15 6.17 -40.82 -0.25 6.89 16 35 H 0.08 1.78 6.69 -52.49 -0.35 1.43 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 38 H 0.39 7.94 7.05 -40.82 -0.29 7.65 16 39 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.12 6.25 -52.49 -0.33 2.79 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -28.14 319.30 -8.10 -36.24 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -5.79 Total: 22.68 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -2.69 Total: -24.18 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.61 Total: -53.59 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.14 -8.10 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385071884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.282 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds