Wall clock time and date at job start Mon Mar 30 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00069 * 2 1 4 4 C 1.53001 * 109.47096 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47117 * 240.00130 * 3 2 1 6 6 C 1.53001 * 109.47319 * 119.99844 * 3 2 1 7 7 N 1.46498 * 109.47126 * 180.02562 * 6 3 2 8 8 C 1.39858 * 119.99811 * 180.02562 * 7 6 3 9 9 C 1.39597 * 119.83889 * 359.97438 * 8 7 6 10 10 C 1.38057 * 120.54825 * 179.97438 * 9 8 7 11 11 C 1.38738 * 120.22062 * 0.02562 * 10 9 8 12 12 N 1.38867 * 120.16444 * 179.97438 * 11 10 9 13 13 C 1.41568 * 119.67472 * 0.02562 * 11 10 9 14 14 C 1.41022 * 120.27025 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99839 * 25.84246 * 14 13 11 16 16 C 1.39886 * 120.00172 * 205.84636 * 14 13 11 17 17 N 1.30903 * 119.99916 * 17.10174 * 16 14 13 18 18 Si 1.86799 * 119.99971 * 197.10522 * 16 14 13 19 19 H 1.48504 * 109.47048 * 94.49815 * 18 16 14 20 20 H 1.48493 * 109.47403 * 214.50088 * 18 16 14 21 21 H 1.48506 * 109.47112 * 334.50068 * 18 16 14 22 22 C 1.38003 * 119.83532 * 179.71875 * 8 7 6 23 23 H 1.07998 * 119.99929 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.99708 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00153 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47383 * 180.02562 * 4 3 2 27 27 H 1.09009 * 109.47019 * 299.99884 * 4 3 2 28 28 H 1.09001 * 109.47689 * 59.99989 * 4 3 2 29 29 H 1.09007 * 109.46774 * 299.99460 * 5 3 2 30 30 H 1.08994 * 109.47391 * 59.99493 * 5 3 2 31 31 H 1.09001 * 109.47448 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46862 * 299.99640 * 6 3 2 33 33 H 1.08997 * 109.47439 * 59.99984 * 6 3 2 34 34 H 0.97005 * 120.00179 * 359.97438 * 7 6 3 35 35 H 1.07998 * 119.72621 * 359.97438 * 9 8 7 36 36 H 1.07994 * 119.88982 * 180.02562 * 10 9 8 37 37 H 0.96994 * 119.99872 * 359.97438 * 12 11 10 38 38 H 0.97004 * 120.00054 * 180.02562 * 12 11 10 39 39 H 0.96998 * 119.99664 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.11959 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9432 1.3862 1.2493 7 7 3.6752 2.6552 1.2495 8 6 4.5496 2.9578 2.2983 9 6 4.7219 2.0484 3.3433 10 6 5.5816 2.3319 4.3856 11 6 6.2850 3.5277 4.4051 12 7 7.1491 3.8119 5.4544 13 6 6.1166 4.4571 3.3507 14 6 6.8256 5.6761 3.3575 15 1 7.7655 5.7511 3.8842 16 6 6.3116 6.7882 2.6823 17 7 5.0499 6.8170 2.3345 18 14 7.4255 8.2319 2.2770 19 1 7.9595 8.0738 0.9003 20 1 6.6502 9.4953 2.3652 21 1 8.5524 8.2741 3.2432 22 6 5.2419 4.1516 2.2922 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.6143 3.4120 0.0002 27 1 0.4423 2.4105 -0.8892 28 1 0.4429 2.4102 0.8908 29 1 3.6515 0.5576 -1.2491 30 1 2.3165 1.3283 -2.1392 31 1 3.4885 2.3299 -1.2491 32 1 2.3164 1.3285 2.1392 33 1 3.6515 0.5577 1.2493 34 1 3.5540 3.2852 0.5219 35 1 4.1780 1.1154 3.3364 36 1 5.7071 1.6206 5.1884 37 1 7.2618 3.1739 6.1762 38 1 7.6394 4.6488 5.4658 39 1 4.6936 7.5880 1.8659 40 1 5.1089 4.8511 1.4801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385071884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:06 Heat of formation + Delta-G solvation = 18.107850 kcal Electronic energy + Delta-G solvation = -19243.895506 eV Core-core repulsion = 16443.463234 eV Total energy + Delta-G solvation = -2800.432272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05020 -39.01349 -36.17729 -35.30586 -33.31367 -31.34584 -31.29438 -28.68914 -28.23502 -26.68203 -26.25067 -23.18831 -22.49064 -21.29898 -19.11728 -18.89693 -17.90776 -17.23432 -16.96900 -16.44907 -15.97817 -15.89594 -15.58045 -14.69374 -14.57048 -14.28997 -14.12755 -13.72719 -13.62784 -13.14825 -13.12169 -13.05217 -12.74491 -12.70987 -12.58473 -12.10992 -12.02190 -11.85671 -11.65778 -11.46866 -11.30364 -11.12583 -10.92281 -10.22477 -9.38121 -9.13224 -8.50050 -7.27695 -5.99273 1.12925 1.41583 1.43497 1.52053 1.53290 1.67135 2.27775 2.91651 3.03675 3.78236 3.84149 3.88508 3.96500 4.02575 4.34958 4.48736 4.60858 4.71020 4.74715 4.85769 4.86691 4.91079 5.00976 5.08185 5.13317 5.24907 5.34287 5.36260 5.39998 5.44938 5.68877 5.77151 5.90424 5.95361 6.07497 6.17969 6.29809 6.58263 6.98586 7.07302 7.14717 7.28661 7.48980 7.68051 8.51613 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.005247 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.774645 B = 5334.730927 C = 6296.194161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.151 4.151 3 C -0.042 4.042 4 C -0.139 4.139 5 C -0.133 4.133 6 C 0.155 3.845 7 N -0.754 5.754 8 C 0.175 3.825 9 C -0.260 4.260 10 C -0.157 4.157 11 C 0.068 3.932 12 N -0.879 5.879 13 C 0.063 3.937 14 C -0.494 4.494 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.833 5.833 18 Si 0.974 3.026 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.258 1.258 22 C -0.226 4.226 23 H 0.112 0.888 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.388 0.612 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 -8.375 -5.031 11.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.169 4.169 3 C -0.043 4.043 4 C -0.197 4.197 5 C -0.190 4.190 6 C 0.030 3.970 7 N -0.389 5.389 8 C 0.075 3.925 9 C -0.284 4.284 10 C -0.182 4.182 11 C -0.034 4.034 12 N -0.423 5.423 13 C 0.057 3.943 14 C -0.525 4.525 15 H 0.092 0.908 16 C -0.178 4.178 17 N -0.460 5.460 18 Si 0.796 3.204 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.182 1.182 22 C -0.251 4.251 23 H 0.130 0.870 24 H 0.122 0.878 25 H 0.135 0.865 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.223 0.777 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.075 -8.418 -5.136 11.582 hybrid contribution 0.571 1.099 -0.021 1.239 sum -5.504 -7.319 -5.157 10.509 Atomic orbital electron populations 1.24160 0.95803 1.02910 0.99700 1.22814 0.96203 0.96910 1.01011 1.19809 0.95158 0.94605 0.94710 1.21908 0.98637 0.96979 1.02146 1.21758 0.99086 1.01705 0.96435 1.21053 0.93175 0.86078 0.96660 1.44435 1.48761 1.20900 1.24778 1.17617 0.91955 0.93656 0.89304 1.19905 1.09302 1.00765 0.98418 1.20045 1.01662 0.96323 1.00137 1.18032 0.98113 0.96136 0.91124 1.41675 1.51504 1.24041 1.25095 1.17355 0.94029 0.92618 0.90251 1.19398 1.06673 0.95238 1.31202 0.90802 1.26552 0.95815 1.02004 0.93400 1.69973 1.14074 1.30818 1.31174 0.85325 0.78965 0.76803 0.79321 1.19440 1.19964 1.18167 1.20418 1.06786 0.96747 1.01171 0.86974 0.87794 0.86527 0.93659 0.90809 0.92656 0.92382 0.91222 0.93445 0.94411 0.93628 0.77694 0.87781 0.87212 0.78232 0.78231 0.91069 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.38 13.70 67.78 0.93 -2.45 16 2 C -0.15 -3.09 8.76 25.64 0.22 -2.87 16 3 C -0.04 -1.04 0.75 -52.93 -0.04 -1.08 16 4 C -0.14 -3.38 6.95 71.98 0.50 -2.88 16 5 C -0.13 -3.09 8.28 71.98 0.60 -2.50 16 6 C 0.16 4.88 3.78 86.38 0.33 5.20 16 7 N -0.75 -29.31 5.14 -339.44 -1.74 -31.06 16 8 C 0.18 8.37 6.64 38.13 0.25 8.63 16 9 C -0.26 -11.89 9.31 22.55 0.21 -11.68 16 10 C -0.16 -7.22 9.86 22.35 0.22 -7.00 16 11 C 0.07 3.35 6.79 38.97 0.26 3.61 16 12 N -0.88 -36.11 8.98 -50.30 -0.45 -36.56 16 13 C 0.06 3.44 5.57 -21.18 -0.12 3.32 16 14 C -0.49 -26.76 8.48 23.35 0.20 -26.56 16 15 H 0.07 3.80 6.70 -2.91 -0.02 3.78 16 16 C 0.04 1.82 5.14 85.23 0.44 2.25 16 17 N -0.83 -45.09 11.03 21.82 0.24 -44.85 16 18 Si 0.97 39.54 29.59 68.60 2.03 41.57 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.23 -12.27 8.50 22.81 0.19 -12.07 16 23 H 0.11 1.60 8.06 -2.91 -0.02 1.57 16 24 H 0.10 1.84 5.69 -2.91 -0.02 1.82 16 25 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 26 H 0.04 1.25 6.86 -2.38 -0.02 1.23 16 27 H 0.07 1.48 7.50 -2.38 -0.02 1.46 16 28 H 0.05 1.36 7.50 -2.39 -0.02 1.34 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.24 6.86 -2.39 -0.02 1.22 16 32 H 0.04 1.26 7.94 -2.39 -0.02 1.24 16 33 H 0.05 1.45 7.94 -2.39 -0.02 1.43 16 34 H 0.39 14.76 6.17 -92.70 -0.57 14.19 16 35 H 0.10 4.26 6.69 -2.91 -0.02 4.24 16 36 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.39 13.23 8.83 -92.71 -0.82 12.41 16 38 H 0.39 15.84 7.05 -92.71 -0.65 15.19 16 39 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 40 H 0.10 5.42 6.25 -2.91 -0.02 5.40 16 Total: -1.00 -60.96 319.30 3.29 -57.67 By element: Atomic # 1 Polarization: 60.27 SS G_CDS: -0.98 Total: 59.28 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 4.20 Total: -46.05 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -1.96 Total: -112.47 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -60.96 3.29 -57.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385071884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.775 kcal (2) G-P(sol) polarization free energy of solvation -60.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds