Wall clock time and date at job start Mon Mar 30 2020 06:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47102 * 239.99612 * 3 2 1 5 5 H 1.48496 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46963 * 119.99371 * 3 2 1 7 7 C 1.37874 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47287 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47287 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47106 * 179.97438 * 12 11 10 14 14 C 1.47909 * 110.99927 * 170.23349 * 13 12 11 15 15 C 1.54581 * 102.63557 * 94.42143 * 14 13 12 16 16 C 1.51599 * 102.95771 * 25.34015 * 15 14 13 17 17 C 1.37923 * 131.46519 * 163.26671 * 16 15 14 18 18 C 1.38869 * 120.02117 * 181.09341 * 17 16 15 19 19 N 1.40011 * 120.13230 * 180.23908 * 18 17 16 20 20 C 1.38874 * 119.73412 * 0.26095 * 18 17 16 21 21 C 1.37887 * 120.18181 * 359.82526 * 20 18 17 22 22 C 1.38919 * 107.97886 * 344.49694 * 16 15 14 23 23 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46937 * 59.99896 * 9 7 2 25 25 H 1.08998 * 109.46720 * 299.99807 * 9 7 2 26 26 H 1.08997 * 109.46817 * 60.00009 * 10 9 7 27 27 H 1.08998 * 109.47144 * 300.00164 * 10 9 7 28 28 H 1.09002 * 109.47138 * 59.99458 * 11 10 9 29 29 H 1.09008 * 109.47056 * 300.00201 * 11 10 9 30 30 H 1.08997 * 109.46817 * 59.99920 * 12 11 10 31 31 H 1.08998 * 109.47144 * 300.00075 * 12 11 10 32 32 H 1.09008 * 110.77386 * 212.70933 * 14 13 12 33 33 H 1.09003 * 110.77790 * 336.13493 * 14 13 12 34 34 H 1.09007 * 110.72975 * 143.91734 * 15 14 13 35 35 H 1.08993 * 110.73082 * 267.03815 * 15 14 13 36 36 H 1.08002 * 119.99266 * 1.37686 * 17 16 15 37 37 H 0.96993 * 119.99981 * 359.97438 * 19 18 17 38 38 H 0.97003 * 119.99672 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.90866 * 179.85431 * 20 18 17 40 40 H 1.07999 * 119.85557 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 2.4747 -6.1500 -0.0008 13 7 1.7402 -7.4221 -0.0008 14 6 2.6536 -8.5615 -0.2356 15 6 2.9941 -9.0234 1.1998 16 6 1.7956 -8.5545 2.0010 17 6 1.3415 -8.9057 3.2551 18 6 0.1815 -8.3326 3.7596 19 7 -0.2790 -8.6837 5.0344 20 6 -0.5203 -7.4104 2.9943 21 6 -0.0661 -7.0616 1.7400 22 6 1.0985 -7.6327 1.2302 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8894 28 1 0.8540 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.1013 -6.0926 0.8892 31 1 3.1013 -6.0918 -0.8907 32 1 2.1487 -9.3545 -0.7875 33 1 3.5518 -8.2354 -0.7601 34 1 3.0906 -10.1083 1.2433 35 1 3.9056 -8.5420 1.5540 36 1 1.8906 -9.6231 3.8469 37 1 0.2123 -9.3285 5.5669 38 1 -1.0897 -8.2825 5.3847 39 1 -1.4241 -6.9648 3.3830 40 1 -0.6157 -6.3435 1.1496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385875254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:09 Heat of formation + Delta-G solvation = 19.893226 kcal Electronic energy + Delta-G solvation = -18881.316750 eV Core-core repulsion = 16080.961898 eV Total energy + Delta-G solvation = -2800.354852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67363 -37.55295 -34.89180 -33.39818 -32.78677 -31.43733 -29.20714 -28.11753 -27.28613 -24.55953 -23.02815 -21.91857 -21.18905 -20.44759 -19.83142 -17.02227 -16.60785 -16.30484 -16.03597 -15.45415 -14.93549 -14.54827 -14.40471 -13.73267 -13.43044 -13.12899 -12.91954 -12.67976 -12.64099 -12.27004 -11.99096 -11.72460 -11.56791 -11.22593 -10.91661 -10.82048 -10.55205 -10.44922 -10.30138 -10.27780 -9.55167 -9.20068 -8.97042 -8.72314 -8.62168 -8.27729 -7.13051 -5.93092 -3.95110 1.45683 1.63549 3.37196 3.41177 3.43877 3.68210 3.83364 3.98522 4.51347 4.58004 4.82370 5.00422 5.06187 5.27629 5.37395 5.42212 5.47004 5.58785 5.63110 5.67400 5.77411 5.91224 5.98093 6.08000 6.18638 6.25895 6.29186 6.37880 6.58013 6.66353 6.75848 6.91206 7.04757 7.13317 7.27783 7.33395 7.57047 7.68075 7.76301 7.93406 8.08432 8.51354 9.12152 9.68350 11.18250 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.004013 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.741565 B = 6976.401339 C = 7736.320703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.118 4.118 12 C 0.058 3.942 13 N -0.490 5.490 14 C 0.051 3.949 15 C -0.110 4.110 16 C -0.096 4.096 17 C -0.171 4.171 18 C 0.200 3.800 19 N -0.883 5.883 20 C -0.180 4.180 21 C -0.056 4.056 22 C 0.042 3.958 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.124 0.876 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -20.959 6.282 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.067 4.067 13 N -0.208 5.208 14 C -0.077 4.077 15 C -0.148 4.148 16 C -0.099 4.099 17 C -0.194 4.194 18 C 0.097 3.903 19 N -0.423 5.423 20 C -0.203 4.203 21 C -0.076 4.076 22 C -0.055 4.055 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.222 0.778 38 H 0.225 0.775 39 H 0.142 0.858 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.788 -20.760 5.764 21.619 hybrid contribution 0.879 0.832 1.030 1.589 sum 2.667 -19.928 6.793 21.222 Atomic orbital electron populations 1.69958 1.06027 1.26564 1.51033 1.25019 0.94829 0.99148 0.95458 0.86685 0.79603 0.83294 0.78568 1.20274 1.21312 1.20310 1.21262 0.92970 0.91258 1.50337 0.92861 1.19078 0.94018 0.91266 0.97132 1.21586 0.99089 0.94000 0.99954 1.21758 0.98026 0.93482 1.02275 1.22366 0.95806 0.88013 1.00504 1.60393 1.27775 1.03071 1.29579 1.23118 0.95758 0.93289 0.95512 1.21687 0.96194 1.01662 0.95303 1.20702 0.96019 0.99375 0.93795 1.19660 0.97962 1.05413 0.96335 1.17587 0.93030 0.93880 0.85832 1.42413 1.31845 1.51699 1.16369 1.20389 1.02340 1.02114 0.95500 1.20417 0.93964 0.98491 0.94746 1.19316 0.96211 0.99798 0.90215 0.93036 0.96618 0.96727 0.93756 0.93532 0.91748 0.92088 0.94740 0.90724 0.89669 0.89972 0.90034 0.90282 0.86785 0.77806 0.77496 0.85827 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 11 C -0.12 -2.15 5.08 -26.73 -0.14 -2.29 16 12 C 0.06 0.90 4.75 -3.83 -0.02 0.89 16 13 N -0.49 -7.13 5.07 -168.93 -0.86 -7.99 16 14 C 0.05 0.57 7.00 -2.44 -0.02 0.55 16 15 C -0.11 -1.18 6.96 -26.61 -0.19 -1.36 16 16 C -0.10 -1.26 6.23 -104.04 -0.65 -1.91 16 17 C -0.17 -2.06 9.89 -39.46 -0.39 -2.45 16 18 C 0.20 2.36 6.76 -83.65 -0.57 1.80 16 19 N -0.88 -7.37 9.11 32.46 0.30 -7.08 16 20 C -0.18 -2.34 9.88 -39.47 -0.39 -2.73 16 21 C -0.06 -0.83 8.53 -39.29 -0.34 -1.16 16 22 C 0.04 0.62 5.29 -83.26 -0.44 0.18 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.14 5.58 -51.92 -0.29 0.86 16 30 H 0.03 0.54 8.06 -51.93 -0.42 0.13 16 31 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 32 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.08 0.80 7.60 -51.93 -0.39 0.41 16 34 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.39 2.52 8.85 -40.82 -0.36 2.16 16 38 H 0.40 2.70 8.85 -40.82 -0.36 2.34 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.94 7.18 -52.49 -0.38 1.56 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -32.48 324.65 -10.14 -42.63 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.38 Total: 1.75 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -3.81 Total: -24.45 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.18 Total: -41.91 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.48 -10.14 -42.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385875254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.522 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds