Wall clock time and date at job start Mon Mar 30 2020 06:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47102 * 239.99612 * 3 2 1 5 5 H 1.48496 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46963 * 119.99371 * 3 2 1 7 7 C 1.37874 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47287 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47287 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47106 * 179.97438 * 12 11 10 14 14 C 1.47909 * 110.99927 * 170.23349 * 13 12 11 15 15 C 1.54581 * 102.63557 * 94.42143 * 14 13 12 16 16 C 1.51599 * 102.95771 * 25.34015 * 15 14 13 17 17 C 1.37923 * 131.46519 * 163.26671 * 16 15 14 18 18 C 1.38869 * 120.02117 * 181.09341 * 17 16 15 19 19 N 1.40011 * 120.13230 * 180.23908 * 18 17 16 20 20 C 1.38874 * 119.73412 * 0.26095 * 18 17 16 21 21 C 1.37887 * 120.18181 * 359.82526 * 20 18 17 22 22 C 1.38919 * 107.97886 * 344.49694 * 16 15 14 23 23 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46937 * 59.99896 * 9 7 2 25 25 H 1.08998 * 109.46720 * 299.99807 * 9 7 2 26 26 H 1.08997 * 109.46817 * 60.00009 * 10 9 7 27 27 H 1.08998 * 109.47144 * 300.00164 * 10 9 7 28 28 H 1.09002 * 109.47138 * 59.99458 * 11 10 9 29 29 H 1.09008 * 109.47056 * 300.00201 * 11 10 9 30 30 H 1.08997 * 109.46817 * 59.99920 * 12 11 10 31 31 H 1.08998 * 109.47144 * 300.00075 * 12 11 10 32 32 H 1.09008 * 110.77386 * 212.70933 * 14 13 12 33 33 H 1.09003 * 110.77790 * 336.13493 * 14 13 12 34 34 H 1.09007 * 110.72975 * 143.91734 * 15 14 13 35 35 H 1.08993 * 110.73082 * 267.03815 * 15 14 13 36 36 H 1.08002 * 119.99266 * 1.37686 * 17 16 15 37 37 H 0.96993 * 119.99981 * 359.97438 * 19 18 17 38 38 H 0.97003 * 119.99672 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.90866 * 179.85431 * 20 18 17 40 40 H 1.07999 * 119.85557 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 2.4747 -6.1500 -0.0008 13 7 1.7402 -7.4221 -0.0008 14 6 2.6536 -8.5615 -0.2356 15 6 2.9941 -9.0234 1.1998 16 6 1.7956 -8.5545 2.0010 17 6 1.3415 -8.9057 3.2551 18 6 0.1815 -8.3326 3.7596 19 7 -0.2790 -8.6837 5.0344 20 6 -0.5203 -7.4104 2.9943 21 6 -0.0661 -7.0616 1.7400 22 6 1.0985 -7.6327 1.2302 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8894 28 1 0.8540 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.1013 -6.0926 0.8892 31 1 3.1013 -6.0918 -0.8907 32 1 2.1487 -9.3545 -0.7875 33 1 3.5518 -8.2354 -0.7601 34 1 3.0906 -10.1083 1.2433 35 1 3.9056 -8.5420 1.5540 36 1 1.8906 -9.6231 3.8469 37 1 0.2123 -9.3285 5.5669 38 1 -1.0897 -8.2825 5.3847 39 1 -1.4241 -6.9648 3.3830 40 1 -0.6157 -6.3435 1.1496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385875254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:09 Heat of formation + Delta-G solvation = -0.484463 kcal Electronic energy + Delta-G solvation = -18882.200393 eV Core-core repulsion = 16080.961898 eV Total energy + Delta-G solvation = -2801.238495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65401 -38.52057 -36.59518 -34.73854 -34.18482 -32.86626 -30.56064 -29.23462 -28.52219 -26.31928 -24.01053 -23.49457 -22.24846 -21.58640 -21.43812 -18.43786 -17.86786 -17.49505 -17.22506 -16.65206 -16.43773 -15.86380 -15.82078 -14.89417 -14.52052 -14.48960 -14.16678 -13.95418 -13.87562 -13.56773 -13.45202 -13.11896 -12.94937 -12.77426 -12.44458 -12.29460 -12.18056 -11.97631 -11.71812 -11.40173 -11.35172 -11.26402 -10.92683 -10.54565 -9.74045 -9.58379 -8.18998 -8.05948 -6.30949 0.47454 0.62860 1.39480 1.43370 1.51274 2.41421 2.74240 2.92297 3.09014 3.13445 3.69403 3.89880 4.06333 4.14065 4.20531 4.23851 4.41991 4.51423 4.54268 4.62962 4.69042 4.79095 4.81717 4.89192 4.97542 5.06014 5.15853 5.20251 5.27331 5.33716 5.35722 5.40717 5.54571 5.64472 5.76624 5.79620 5.86527 6.14953 6.26006 6.36998 6.66249 6.85991 7.06062 7.38287 8.92858 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.004013 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.741565 B = 6976.401339 C = 7736.320703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.070 3.930 13 N -0.505 5.505 14 C 0.048 3.952 15 C -0.104 4.104 16 C -0.100 4.100 17 C -0.177 4.177 18 C 0.204 3.796 19 N -0.869 5.869 20 C -0.196 4.196 21 C -0.077 4.077 22 C 0.011 3.989 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.014 1.014 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.407 0.593 38 H 0.406 0.594 39 H 0.133 0.867 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -22.016 7.037 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.056 4.056 13 N -0.223 5.223 14 C -0.078 4.078 15 C -0.142 4.142 16 C -0.103 4.103 17 C -0.200 4.200 18 C 0.098 3.902 19 N -0.410 5.410 20 C -0.220 4.220 21 C -0.098 4.098 22 C -0.086 4.086 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.004 0.996 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.237 0.763 38 H 0.235 0.765 39 H 0.151 0.849 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.706 -21.851 6.548 23.110 hybrid contribution 0.190 1.113 0.855 1.417 sum 3.896 -20.737 7.404 22.361 Atomic orbital electron populations 1.70105 1.07903 1.27832 1.51642 1.26024 0.95788 1.03477 0.94643 0.85479 0.78273 0.77913 0.79252 1.19003 1.20719 1.19141 1.21710 0.93577 0.92465 1.50669 0.92128 1.18995 0.94453 0.93304 0.94458 1.21380 0.97957 0.93524 1.00375 1.21574 0.98214 0.93427 1.01274 1.22151 0.94735 0.87654 1.01023 1.60342 1.28574 1.03476 1.29921 1.23265 0.95891 0.92321 0.96352 1.21721 0.95187 1.03138 0.94144 1.21069 0.96593 0.98582 0.94095 1.19979 0.98048 1.05680 0.96304 1.17699 0.92755 0.92998 0.86710 1.42391 1.32058 1.51419 1.15139 1.20538 1.03147 1.02988 0.95286 1.20463 0.94672 0.98986 0.95647 1.19482 0.96821 1.01229 0.91090 0.92770 0.99237 0.99559 0.93513 0.92650 0.92773 0.93200 0.94976 0.89262 0.88801 0.88320 0.87620 0.89651 0.84302 0.76342 0.76502 0.84888 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.45 9.11 25.60 0.23 -32.21 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -4.13 5.15 30.59 0.16 -3.97 16 11 C -0.11 -4.05 5.08 30.59 0.16 -3.89 16 12 C 0.07 2.13 4.75 86.30 0.41 2.54 16 13 N -0.50 -14.43 5.07 -688.39 -3.49 -17.92 16 14 C 0.05 0.98 7.00 86.65 0.61 1.59 16 15 C -0.10 -1.95 6.96 30.67 0.21 -1.73 16 16 C -0.10 -2.49 6.23 -19.49 -0.12 -2.61 16 17 C -0.18 -3.91 9.89 22.35 0.22 -3.69 16 18 C 0.20 4.55 6.76 38.14 0.26 4.81 16 19 N -0.87 -12.71 9.11 -51.21 -0.47 -13.18 16 20 C -0.20 -5.16 9.88 22.34 0.22 -4.94 16 21 C -0.08 -2.39 8.53 22.46 0.19 -2.20 16 22 C 0.01 0.32 5.29 38.20 0.20 0.52 16 23 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 24 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.98 5.58 -2.38 -0.01 1.97 16 30 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 31 H 0.09 2.42 7.85 -2.39 -0.02 2.40 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.10 1.66 7.60 -2.39 -0.02 1.65 16 34 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.41 4.11 8.85 -92.71 -0.82 3.29 16 38 H 0.41 4.77 8.85 -92.71 -0.82 3.95 16 39 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 40 H 0.11 3.65 7.18 -2.91 -0.02 3.63 16 Total: -1.00 -71.01 324.65 1.11 -69.91 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.61 Total: 16.23 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 3.36 Total: -43.88 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -3.67 Total: -89.62 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.01 1.11 -69.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385875254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.422 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds