Wall clock time and date at job start Mon Mar 30 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00372 * 2 1 4 4 H 1.48502 * 109.47098 * 270.00210 * 3 2 1 5 5 H 1.48506 * 109.46669 * 30.00033 * 3 2 1 6 6 H 1.48499 * 109.47110 * 150.00093 * 3 2 1 7 7 C 1.37882 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46717 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47132 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47126 * 180.02562 * 12 11 10 14 14 C 1.47898 * 111.00104 * 290.12520 * 13 12 11 15 15 C 1.54593 * 102.63571 * 265.46170 * 14 13 12 16 16 C 1.51595 * 102.83578 * 334.41087 * 15 14 13 17 17 C 1.37998 * 131.47713 * 196.26902 * 16 15 14 18 18 C 1.38162 * 120.18144 * 179.60283 * 17 16 15 19 19 C 1.38991 * 119.80344 * 359.92396 * 18 17 16 20 20 N 1.39675 * 119.94167 * 180.12674 * 19 18 17 21 21 C 1.38563 * 120.10924 * 0.40408 * 19 18 17 22 22 C 1.39042 * 107.92795 * 16.03777 * 16 15 14 23 23 H 0.97000 * 119.99862 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46600 * 60.00476 * 9 7 2 25 25 H 1.08996 * 109.47007 * 299.99993 * 9 7 2 26 26 H 1.09003 * 109.47358 * 60.00197 * 10 9 7 27 27 H 1.09000 * 109.47475 * 300.00368 * 10 9 7 28 28 H 1.09003 * 109.46954 * 59.99835 * 11 10 9 29 29 H 1.08996 * 109.46727 * 300.00206 * 11 10 9 30 30 H 1.09003 * 109.47614 * 59.99898 * 12 11 10 31 31 H 1.09005 * 109.47312 * 299.99390 * 12 11 10 32 32 H 1.08997 * 110.77879 * 147.17348 * 14 13 12 33 33 H 1.09007 * 110.93839 * 23.81939 * 14 13 12 34 34 H 1.08998 * 110.73976 * 216.07159 * 15 14 13 35 35 H 1.09004 * 110.73998 * 92.74517 * 15 14 13 36 36 H 1.08002 * 119.90824 * 359.62362 * 17 16 15 37 37 H 1.07997 * 120.09286 * 179.97438 * 18 17 16 38 38 H 0.96999 * 120.00193 * 0.02562 * 20 19 18 39 39 H 0.97005 * 119.99698 * 179.97438 * 20 19 18 40 40 H 1.07998 * 119.93299 * 179.76187 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 6 2.4743 -6.1500 -0.0031 13 7 1.7398 -7.4222 -0.0044 14 6 1.0630 -7.6447 1.2917 15 6 2.0879 -8.5058 2.0650 16 6 2.8644 -9.1842 0.9537 17 6 3.7038 -10.2795 0.9620 18 6 4.2942 -10.7111 -0.2102 19 6 4.0392 -10.0396 -1.4001 20 7 4.6324 -10.4750 -2.5873 21 6 3.2020 -8.9354 -1.4095 22 6 2.6045 -8.5008 -0.2289 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8904 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.8530 -5.0442 -0.8922 29 1 0.8539 -5.0454 0.8877 30 1 3.1011 -6.0928 0.8869 31 1 3.1009 -6.0919 -0.8932 32 1 0.1287 -8.1883 1.1517 33 1 0.8856 -6.7000 1.8058 34 1 1.5810 -9.2431 2.6875 35 1 2.7445 -7.8772 2.6665 36 1 3.8996 -10.8009 1.8873 37 1 4.9512 -11.5681 -0.2020 38 1 5.2214 -11.2456 -2.5810 39 1 4.4546 -10.0072 -3.4183 40 1 3.0089 -8.4135 -2.3351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385876071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:25 Heat of formation + Delta-G solvation = 17.987964 kcal Electronic energy + Delta-G solvation = -18603.519436 eV Core-core repulsion = 15803.081965 eV Total energy + Delta-G solvation = -2800.437471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73555 -37.71469 -35.03114 -33.70692 -32.35733 -31.37620 -29.86722 -27.71687 -27.44005 -24.66230 -23.09580 -22.14778 -21.10868 -20.37149 -19.86927 -17.10789 -16.99197 -16.18574 -15.87150 -15.66840 -15.01044 -14.48849 -14.40787 -13.94265 -13.56420 -13.50807 -13.04509 -12.69287 -12.45835 -12.27687 -11.85204 -11.62659 -11.54516 -11.23005 -11.08254 -10.93645 -10.56773 -10.50591 -10.37936 -10.33586 -9.59913 -9.42004 -9.17565 -8.95491 -8.30763 -8.09170 -7.45494 -5.95831 -3.97948 1.36810 1.52995 3.34235 3.40191 3.43744 3.50508 3.73843 3.98811 4.49215 4.64998 4.82643 4.98887 5.09426 5.13656 5.29133 5.39649 5.45778 5.51602 5.63993 5.68872 5.73939 5.80238 5.90367 6.02707 6.15085 6.19410 6.30459 6.36154 6.47140 6.56902 6.61419 6.83039 6.98280 7.07105 7.17766 7.25616 7.43998 7.59007 7.73332 7.89158 8.05372 8.48213 9.09581 9.65806 11.15534 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.003301 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.340567 B = 8481.054038 C = 8918.136773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.114 4.114 12 C 0.062 3.938 13 N -0.495 5.495 14 C 0.046 3.954 15 C -0.102 4.102 16 C -0.199 4.199 17 C -0.043 4.043 18 C -0.216 4.216 19 C 0.229 3.771 20 N -0.879 5.879 21 C -0.193 4.193 22 C 0.146 3.854 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.397 0.603 39 H 0.398 0.602 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 -22.913 -0.077 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.063 4.063 13 N -0.212 5.212 14 C -0.080 4.080 15 C -0.140 4.140 16 C -0.203 4.203 17 C -0.062 4.062 18 C -0.239 4.239 19 C 0.124 3.876 20 N -0.419 5.419 21 C -0.217 4.217 22 C 0.049 3.951 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.225 0.775 39 H 0.226 0.774 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.587 -22.664 -0.440 23.606 hybrid contribution 1.116 0.755 0.203 1.363 sum 7.703 -21.909 -0.237 23.225 Atomic orbital electron populations 1.69965 1.06043 1.26505 1.51041 1.25031 0.94841 0.99215 0.95438 0.86615 0.79857 0.83574 0.78078 1.20689 1.21246 1.19908 1.21294 0.93022 0.91217 1.50309 0.92773 1.19084 0.93994 0.91273 0.97179 1.21601 0.99118 0.93862 1.00149 1.21722 0.97793 0.93445 1.02252 1.22339 0.95826 0.86966 1.01177 1.60151 1.27106 1.01577 1.32330 1.23207 0.97104 1.00466 0.87272 1.21563 0.97228 0.98598 0.96620 1.20795 1.03585 1.00693 0.95265 1.20063 0.94447 0.94339 0.97338 1.20389 1.07847 1.04068 0.91608 1.17390 0.91339 0.92110 0.86716 1.42424 1.55062 1.36848 1.07517 1.19773 1.04521 0.99979 0.97452 1.19308 0.90761 0.92200 0.92851 0.93056 0.96601 0.96687 0.93598 0.93437 0.91566 0.92367 0.94171 0.90792 0.89612 0.89091 0.90254 0.90627 0.86479 0.86310 0.77518 0.77422 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.11 -2.00 5.25 -26.73 -0.14 -2.14 16 12 C 0.06 0.94 4.75 -3.83 -0.02 0.93 16 13 N -0.50 -7.19 5.04 -169.04 -0.85 -8.04 16 14 C 0.05 0.58 6.71 -2.44 -0.02 0.56 16 15 C -0.10 -1.15 6.92 -26.61 -0.18 -1.34 16 16 C -0.20 -2.52 6.23 -103.97 -0.65 -3.17 16 17 C -0.04 -0.47 10.02 -39.70 -0.40 -0.87 16 18 C -0.22 -2.24 9.90 -39.33 -0.39 -2.63 16 19 C 0.23 2.48 6.74 -83.89 -0.57 1.92 16 20 N -0.88 -6.60 9.09 32.36 0.29 -6.31 16 21 C -0.19 -2.46 9.91 -39.08 -0.39 -2.84 16 22 C 0.15 2.04 5.53 -83.42 -0.46 1.58 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.00 6.59 -51.93 -0.34 0.66 16 30 H 0.04 0.61 8.03 -51.93 -0.42 0.19 16 31 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.13 6.27 -51.93 -0.33 0.80 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.40 2.13 8.84 -40.82 -0.36 1.77 16 39 H 0.40 2.50 8.84 -40.82 -0.36 2.14 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -32.01 326.92 -10.23 -42.24 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.42 Total: 0.73 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -3.90 Total: -23.83 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.18 Total: -41.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.01 -10.23 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385876071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.226 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds