Wall clock time and date at job start Mon Mar 30 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00372 * 2 1 4 4 H 1.48502 * 109.47098 * 270.00210 * 3 2 1 5 5 H 1.48506 * 109.46669 * 30.00033 * 3 2 1 6 6 H 1.48499 * 109.47110 * 150.00093 * 3 2 1 7 7 C 1.37882 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46717 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47132 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47126 * 180.02562 * 12 11 10 14 14 C 1.47898 * 111.00104 * 290.12520 * 13 12 11 15 15 C 1.54593 * 102.63571 * 265.46170 * 14 13 12 16 16 C 1.51595 * 102.83578 * 334.41087 * 15 14 13 17 17 C 1.37998 * 131.47713 * 196.26902 * 16 15 14 18 18 C 1.38162 * 120.18144 * 179.60283 * 17 16 15 19 19 C 1.38991 * 119.80344 * 359.92396 * 18 17 16 20 20 N 1.39675 * 119.94167 * 180.12674 * 19 18 17 21 21 C 1.38563 * 120.10924 * 0.40408 * 19 18 17 22 22 C 1.39042 * 107.92795 * 16.03777 * 16 15 14 23 23 H 0.97000 * 119.99862 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46600 * 60.00476 * 9 7 2 25 25 H 1.08996 * 109.47007 * 299.99993 * 9 7 2 26 26 H 1.09003 * 109.47358 * 60.00197 * 10 9 7 27 27 H 1.09000 * 109.47475 * 300.00368 * 10 9 7 28 28 H 1.09003 * 109.46954 * 59.99835 * 11 10 9 29 29 H 1.08996 * 109.46727 * 300.00206 * 11 10 9 30 30 H 1.09003 * 109.47614 * 59.99898 * 12 11 10 31 31 H 1.09005 * 109.47312 * 299.99390 * 12 11 10 32 32 H 1.08997 * 110.77879 * 147.17348 * 14 13 12 33 33 H 1.09007 * 110.93839 * 23.81939 * 14 13 12 34 34 H 1.08998 * 110.73976 * 216.07159 * 15 14 13 35 35 H 1.09004 * 110.73998 * 92.74517 * 15 14 13 36 36 H 1.08002 * 119.90824 * 359.62362 * 17 16 15 37 37 H 1.07997 * 120.09286 * 179.97438 * 18 17 16 38 38 H 0.96999 * 120.00193 * 0.02562 * 20 19 18 39 39 H 0.97005 * 119.99698 * 179.97438 * 20 19 18 40 40 H 1.07998 * 119.93299 * 179.76187 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 6 2.4743 -6.1500 -0.0031 13 7 1.7398 -7.4222 -0.0044 14 6 1.0630 -7.6447 1.2917 15 6 2.0879 -8.5058 2.0650 16 6 2.8644 -9.1842 0.9537 17 6 3.7038 -10.2795 0.9620 18 6 4.2942 -10.7111 -0.2102 19 6 4.0392 -10.0396 -1.4001 20 7 4.6324 -10.4750 -2.5873 21 6 3.2020 -8.9354 -1.4095 22 6 2.6045 -8.5008 -0.2289 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8904 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.8530 -5.0442 -0.8922 29 1 0.8539 -5.0454 0.8877 30 1 3.1011 -6.0928 0.8869 31 1 3.1009 -6.0919 -0.8932 32 1 0.1287 -8.1883 1.1517 33 1 0.8856 -6.7000 1.8058 34 1 1.5810 -9.2431 2.6875 35 1 2.7445 -7.8772 2.6665 36 1 3.8996 -10.8009 1.8873 37 1 4.9512 -11.5681 -0.2020 38 1 5.2214 -11.2456 -2.5810 39 1 4.4546 -10.0072 -3.4183 40 1 3.0089 -8.4135 -2.3351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385876071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:24 Heat of formation + Delta-G solvation = -1.647730 kcal Electronic energy + Delta-G solvation = -18604.370904 eV Core-core repulsion = 15803.081965 eV Total energy + Delta-G solvation = -2801.288938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67427 -38.63069 -36.60113 -35.01236 -34.01646 -32.37025 -31.20627 -29.17206 -28.31869 -26.41800 -24.07030 -23.59396 -22.08679 -21.74565 -21.25423 -18.41971 -17.92529 -17.84013 -16.88875 -16.66162 -16.47190 -15.99192 -15.72748 -14.99236 -14.63546 -14.44756 -14.31820 -14.11360 -13.80645 -13.60077 -13.32967 -13.16509 -12.86000 -12.61737 -12.35357 -12.29496 -12.17767 -12.06340 -11.85356 -11.42915 -11.33678 -11.25402 -10.97074 -10.55110 -10.21859 -9.05386 -8.26130 -8.19507 -6.31020 0.47027 0.67047 1.39742 1.41508 1.52696 2.41069 2.61957 2.89596 3.13181 3.18618 3.73843 3.89629 4.04885 4.11363 4.16530 4.22023 4.36815 4.48540 4.51776 4.60355 4.68250 4.78247 4.80341 4.90928 4.94755 4.99935 5.14342 5.20572 5.26771 5.32644 5.39333 5.50933 5.54495 5.63900 5.74877 5.77838 5.86941 6.05066 6.25721 6.32042 6.63921 6.86331 7.04223 7.38223 8.92388 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.003301 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.340567 B = 8481.054038 C = 8918.136773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.096 4.096 11 C -0.102 4.102 12 C 0.075 3.925 13 N -0.508 5.508 14 C 0.041 3.959 15 C -0.095 4.095 16 C -0.215 4.215 17 C -0.045 4.045 18 C -0.215 4.215 19 C 0.228 3.772 20 N -0.867 5.867 21 C -0.212 4.212 22 C 0.119 3.881 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.008 1.008 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.409 0.591 39 H 0.404 0.596 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.979 -24.074 0.230 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.140 4.140 12 C -0.050 4.050 13 N -0.225 5.225 14 C -0.085 4.085 15 C -0.133 4.133 16 C -0.219 4.219 17 C -0.064 4.064 18 C -0.238 4.238 19 C 0.122 3.878 20 N -0.407 5.407 21 C -0.237 4.237 22 C 0.022 3.978 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.010 0.990 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.240 0.760 39 H 0.233 0.767 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.424 -23.861 -0.154 25.305 hybrid contribution 0.549 1.031 0.058 1.169 sum 8.973 -22.830 -0.096 24.531 Atomic orbital electron populations 1.70101 1.07844 1.27776 1.51718 1.26016 0.95799 1.03454 0.94724 0.85435 0.78677 0.78335 0.78527 1.19746 1.20634 1.18679 1.21742 0.93563 0.92523 1.50505 0.92223 1.19000 0.94430 0.93117 0.94703 1.21396 0.98025 0.93514 1.00498 1.21519 0.97811 0.92798 1.01822 1.22061 0.94925 0.86917 1.01097 1.60105 1.27503 1.01368 1.33549 1.23278 0.97680 1.00720 0.86823 1.21529 0.96778 0.98666 0.96359 1.21017 1.04402 1.01427 0.95075 1.20400 0.93615 0.93779 0.98643 1.20750 1.07567 1.04437 0.91077 1.17513 0.90805 0.91497 0.88018 1.42411 1.54443 1.37012 1.06857 1.19916 1.05588 1.01094 0.97135 1.19480 0.91862 0.92532 0.93929 0.92757 0.99270 0.99003 0.92987 0.93179 0.92640 0.92191 0.93973 0.91107 0.89061 0.89462 0.88352 0.90644 0.84133 0.83648 0.76036 0.76710 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.97 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16 11 C -0.10 -3.63 5.25 30.59 0.16 -3.47 16 12 C 0.08 2.31 4.75 86.30 0.41 2.72 16 13 N -0.51 -14.78 5.04 -688.72 -3.47 -18.25 16 14 C 0.04 1.03 6.71 86.65 0.58 1.61 16 15 C -0.10 -2.03 6.92 30.68 0.21 -1.82 16 16 C -0.21 -5.15 6.23 -19.44 -0.12 -5.27 16 17 C -0.05 -0.89 10.02 22.19 0.22 -0.67 16 18 C -0.22 -3.89 9.90 22.43 0.22 -3.66 16 19 C 0.23 4.54 6.74 38.15 0.26 4.80 16 20 N -0.87 -11.20 9.09 -51.53 -0.47 -11.67 16 21 C -0.21 -5.32 9.91 22.60 0.22 -5.10 16 22 C 0.12 3.26 5.53 38.27 0.21 3.47 16 23 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 24 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 2.11 6.59 -2.39 -0.02 2.09 16 30 H 0.04 1.27 8.03 -2.39 -0.02 1.25 16 31 H 0.07 2.19 8.06 -2.38 -0.02 2.17 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.17 6.27 -2.38 -0.01 2.15 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.41 3.28 8.84 -92.71 -0.82 2.46 16 39 H 0.40 4.42 8.84 -92.70 -0.82 3.60 16 40 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -69.01 326.92 1.15 -67.86 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.61 Total: 14.09 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.38 Total: -41.24 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -3.65 Total: -87.77 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.01 1.15 -67.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385876071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.212 kcal (2) G-P(sol) polarization free energy of solvation -69.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds