Wall clock time and date at job start Mon Mar 30 2020 07:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47420 * 2 1 4 4 H 1.09000 * 115.55919 * 330.68571 * 3 2 1 5 5 C 1.52997 * 117.50039 * 116.37742 * 3 2 1 6 6 C 1.52999 * 117.49643 * 185.00308 * 3 2 1 7 7 H 1.08999 * 117.51771 * 145.03167 * 6 3 2 8 8 C 1.52993 * 117.50167 * 359.97438 * 6 3 2 9 9 N 1.46506 * 109.47312 * 174.99198 * 8 6 3 10 10 C 1.39855 * 120.00362 * 180.02562 * 9 8 6 11 11 C 1.39604 * 119.83655 * 359.96647 * 10 9 8 12 12 C 1.38049 * 120.54924 * 180.02562 * 11 10 9 13 13 C 1.38742 * 120.22110 * 359.70151 * 12 11 10 14 14 N 1.38866 * 120.16763 * 180.30311 * 13 12 11 15 15 C 1.41561 * 119.67084 * 0.57483 * 13 12 11 16 16 C 1.41030 * 120.26998 * 179.72494 * 15 13 12 17 17 H 1.08001 * 119.99667 * 25.32556 * 16 15 13 18 18 C 1.39884 * 119.99890 * 205.60955 * 16 15 13 19 19 N 1.30900 * 120.00634 * 14.93256 * 18 16 15 20 20 Si 1.86805 * 119.99872 * 194.93472 * 18 16 15 21 21 H 1.48505 * 109.47017 * 59.99726 * 20 18 16 22 22 H 1.48497 * 109.47259 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46995 * 299.99803 * 20 18 16 24 24 C 1.38002 * 119.83861 * 179.97438 * 10 9 8 25 25 H 1.08998 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46870 * 300.00753 * 1 2 3 27 27 H 1.09004 * 109.46754 * 59.99848 * 1 2 3 28 28 H 1.09002 * 109.47200 * 239.99680 * 2 1 3 29 29 H 1.09000 * 109.47137 * 119.99815 * 2 1 3 30 30 H 1.08999 * 117.50016 * 0.02562 * 5 3 2 31 31 H 1.08998 * 117.49879 * 214.97788 * 5 3 2 32 32 H 1.09001 * 109.47283 * 54.99069 * 8 6 3 33 33 H 1.09003 * 109.47223 * 294.98897 * 8 6 3 34 34 H 0.96998 * 119.99708 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.72635 * 0.02562 * 11 10 9 36 36 H 1.07998 * 119.89639 * 180.02562 * 12 11 10 37 37 H 0.96993 * 119.99804 * 180.28278 * 14 13 12 38 38 H 0.96996 * 119.99988 * 0.27222 * 14 13 12 39 39 H 0.96998 * 120.00791 * 180.02562 * 19 18 16 40 40 H 1.07990 * 120.12000 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 -0.4814 5 6 2.8440 1.9075 1.2158 6 6 3.5502 1.6577 -0.1184 7 1 3.8925 2.5286 -0.6773 8 6 4.4347 0.4141 -0.2270 9 7 5.8242 0.8211 -0.4510 10 6 6.8239 -0.1478 -0.5842 11 6 6.4941 -1.5018 -0.5026 12 6 7.4692 -2.4705 -0.6314 13 6 8.7901 -2.1070 -0.8503 14 7 9.7691 -3.0824 -0.9860 15 6 9.1360 -0.7365 -0.9288 16 6 10.4757 -0.3526 -1.1450 17 1 11.1564 -1.0261 -1.6445 18 6 10.9242 0.8980 -0.7074 19 7 10.2105 1.5875 0.1462 20 14 12.5419 1.5843 -1.3412 21 1 12.4758 1.7235 -2.8182 22 1 12.7888 2.9147 -0.7296 23 1 13.6469 0.6603 -0.9801 24 6 8.1315 0.2394 -0.7956 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0100 1.1857 2.0155 31 1 2.7214 2.9427 1.5343 32 1 4.0970 -0.2001 -1.0618 33 1 4.3689 -0.1604 0.6969 34 1 6.0506 1.7626 -0.5076 35 1 5.4676 -1.7940 -0.3372 36 1 7.2022 -3.5150 -0.5669 37 1 10.6925 -2.8254 -1.1349 38 1 9.5296 -4.0208 -0.9319 39 1 10.5213 2.4548 0.4495 40 1 8.3830 1.2878 -0.8577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388176738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:08 Heat of formation + Delta-G solvation = 32.388380 kcal Electronic energy + Delta-G solvation = -18800.030272 eV Core-core repulsion = 16000.217250 eV Total energy + Delta-G solvation = -2799.813022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.59388 -37.65050 -34.91813 -33.42520 -32.31230 -31.27775 -29.37049 -27.47955 -24.94983 -24.40768 -23.94877 -21.59099 -20.95472 -19.64309 -19.30454 -17.06831 -16.07277 -15.66310 -15.38881 -15.01777 -14.63506 -14.42464 -14.00285 -13.84742 -13.44164 -12.77925 -12.41026 -12.33115 -12.10294 -11.85452 -11.70893 -11.47415 -11.30923 -11.22176 -11.06283 -10.97612 -10.80422 -10.38059 -10.09924 -9.95730 -9.68980 -9.48132 -9.29322 -9.02882 -7.71036 -7.18448 -6.57336 -5.49367 -4.03790 2.94916 3.14098 3.17027 3.34383 3.51673 3.75809 4.05510 4.45219 4.61670 4.84456 4.90577 5.02506 5.13969 5.26137 5.43917 5.45895 5.52882 5.68647 5.85030 5.88529 5.91511 5.93543 6.03753 6.07328 6.23212 6.30992 6.39409 6.42325 6.67043 7.15711 7.19222 7.35699 7.53033 7.74316 7.92257 8.04598 8.16313 8.49351 8.79880 8.94410 8.98227 9.03869 9.29311 9.37675 10.40906 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.004404 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.804443 B = 6356.321210 C = 7287.449142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.145 4.145 4 H 0.102 0.898 5 C -0.175 4.175 6 C -0.157 4.157 7 H 0.105 0.895 8 C 0.172 3.828 9 N -0.761 5.761 10 C 0.177 3.823 11 C -0.256 4.256 12 C -0.153 4.153 13 C 0.084 3.916 14 N -0.889 5.889 15 C 0.095 3.905 16 C -0.464 4.464 17 H 0.070 0.930 18 C 0.076 3.924 19 N -0.801 5.801 20 Si 0.903 3.097 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.201 4.201 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.387 0.613 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.388 0.612 38 H 0.374 0.626 39 H 0.275 0.725 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 0.240 0.113 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.164 4.164 4 H 0.120 0.880 5 C -0.212 4.212 6 C -0.175 4.175 7 H 0.123 0.877 8 C 0.047 3.953 9 N -0.397 5.397 10 C 0.079 3.921 11 C -0.280 4.280 12 C -0.177 4.177 13 C -0.017 4.017 14 N -0.432 5.432 15 C 0.090 3.910 16 C -0.495 4.495 17 H 0.088 0.912 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.226 4.226 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.221 0.779 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.216 0.784 38 H 0.199 0.801 39 H 0.086 0.914 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.960 0.411 0.292 11.970 hybrid contribution 1.067 0.545 -0.169 1.210 sum -10.893 0.956 0.123 10.935 Atomic orbital electron populations 1.21741 0.95739 1.01426 1.01602 1.21123 0.95579 0.94319 1.02443 1.22418 0.93250 0.98079 1.02662 0.88023 1.23172 1.04301 1.02042 0.91649 1.22585 0.93522 1.00584 1.00839 0.87693 1.20485 0.82013 0.93391 0.99419 1.44314 1.04174 1.06672 1.84490 1.17525 0.88099 0.87833 0.98681 1.19603 0.96972 0.91052 1.20350 1.19694 0.91804 0.96436 1.09756 1.17855 0.88184 0.89327 1.06341 1.41803 1.08898 1.05240 1.87255 1.16967 0.93203 0.88277 0.92559 1.19104 0.95609 1.00330 1.34488 0.91181 1.25743 0.98440 0.96682 0.93111 1.69867 1.37731 1.12118 1.23090 0.86477 0.82325 0.78350 0.80055 1.19185 1.20628 1.19390 1.20528 0.88983 0.99753 1.13296 0.92811 0.92827 0.92862 0.91329 0.91668 0.88688 0.89143 0.93322 0.93583 0.77948 0.89818 0.89822 0.78372 0.80138 0.91441 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.87 37.16 0.37 -0.91 16 2 C -0.10 -1.02 5.30 -26.73 -0.14 -1.16 16 3 C -0.15 -1.60 5.74 -90.62 -0.52 -2.12 16 4 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 5 C -0.17 -2.03 9.82 -26.73 -0.26 -2.30 16 6 C -0.16 -2.06 5.85 -90.62 -0.53 -2.59 16 7 H 0.10 1.36 8.04 -51.93 -0.42 0.95 16 8 C 0.17 2.81 4.27 -4.04 -0.02 2.79 16 9 N -0.76 -15.12 5.74 -58.64 -0.34 -15.45 16 10 C 0.18 4.24 6.64 -83.77 -0.56 3.68 16 11 C -0.26 -5.97 9.31 -39.14 -0.36 -6.33 16 12 C -0.15 -3.58 9.86 -39.46 -0.39 -3.97 16 13 C 0.08 2.07 6.79 -83.22 -0.56 1.50 16 14 N -0.89 -18.54 8.98 32.75 0.29 -18.24 16 15 C 0.10 2.57 5.58 -106.65 -0.60 1.97 16 16 C -0.46 -12.35 8.50 -37.91 -0.32 -12.67 16 17 H 0.07 1.77 6.66 -52.49 -0.35 1.42 16 18 C 0.08 1.94 5.19 -17.33 -0.09 1.85 16 19 N -0.80 -21.20 10.88 55.54 0.60 -20.60 16 20 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.20 -5.33 8.50 -38.75 -0.33 -5.66 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 29 H 0.06 0.70 7.88 -51.93 -0.41 0.30 16 30 H 0.09 1.14 7.92 -51.93 -0.41 0.72 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.81 7.39 -51.93 -0.38 0.42 16 33 H 0.05 0.78 7.67 -51.93 -0.40 0.38 16 34 H 0.39 7.37 8.40 -40.82 -0.34 7.02 16 35 H 0.08 1.78 6.69 -52.49 -0.35 1.42 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.39 7.93 7.04 -40.82 -0.29 7.64 16 38 H 0.37 6.60 8.83 -40.82 -0.36 6.23 16 39 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.12 3.26 6.15 -52.49 -0.32 2.94 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -28.44 324.99 -9.98 -38.42 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -6.10 Total: 22.77 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -4.32 Total: -25.90 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.56 Total: -54.29 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.44 -9.98 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388176738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.813 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds