Wall clock time and date at job start Mon Mar 30 2020 07:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47420 * 2 1 4 4 H 1.09000 * 115.55919 * 330.68571 * 3 2 1 5 5 C 1.52997 * 117.50039 * 116.37742 * 3 2 1 6 6 C 1.52999 * 117.49643 * 185.00308 * 3 2 1 7 7 H 1.08999 * 117.51771 * 145.03167 * 6 3 2 8 8 C 1.52993 * 117.50167 * 359.97438 * 6 3 2 9 9 N 1.46506 * 109.47312 * 174.99198 * 8 6 3 10 10 C 1.39855 * 120.00362 * 180.02562 * 9 8 6 11 11 C 1.39604 * 119.83655 * 359.96647 * 10 9 8 12 12 C 1.38049 * 120.54924 * 180.02562 * 11 10 9 13 13 C 1.38742 * 120.22110 * 359.70151 * 12 11 10 14 14 N 1.38866 * 120.16763 * 180.30311 * 13 12 11 15 15 C 1.41561 * 119.67084 * 0.57483 * 13 12 11 16 16 C 1.41030 * 120.26998 * 179.72494 * 15 13 12 17 17 H 1.08001 * 119.99667 * 25.32556 * 16 15 13 18 18 C 1.39884 * 119.99890 * 205.60955 * 16 15 13 19 19 N 1.30900 * 120.00634 * 14.93256 * 18 16 15 20 20 Si 1.86805 * 119.99872 * 194.93472 * 18 16 15 21 21 H 1.48505 * 109.47017 * 59.99726 * 20 18 16 22 22 H 1.48497 * 109.47259 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46995 * 299.99803 * 20 18 16 24 24 C 1.38002 * 119.83861 * 179.97438 * 10 9 8 25 25 H 1.08998 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46870 * 300.00753 * 1 2 3 27 27 H 1.09004 * 109.46754 * 59.99848 * 1 2 3 28 28 H 1.09002 * 109.47200 * 239.99680 * 2 1 3 29 29 H 1.09000 * 109.47137 * 119.99815 * 2 1 3 30 30 H 1.08999 * 117.50016 * 0.02562 * 5 3 2 31 31 H 1.08998 * 117.49879 * 214.97788 * 5 3 2 32 32 H 1.09001 * 109.47283 * 54.99069 * 8 6 3 33 33 H 1.09003 * 109.47223 * 294.98897 * 8 6 3 34 34 H 0.96998 * 119.99708 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.72635 * 0.02562 * 11 10 9 36 36 H 1.07998 * 119.89639 * 180.02562 * 12 11 10 37 37 H 0.96993 * 119.99804 * 180.28278 * 14 13 12 38 38 H 0.96996 * 119.99988 * 0.27222 * 14 13 12 39 39 H 0.96998 * 120.00791 * 180.02562 * 19 18 16 40 40 H 1.07990 * 120.12000 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 -0.4814 5 6 2.8440 1.9075 1.2158 6 6 3.5502 1.6577 -0.1184 7 1 3.8925 2.5286 -0.6773 8 6 4.4347 0.4141 -0.2270 9 7 5.8242 0.8211 -0.4510 10 6 6.8239 -0.1478 -0.5842 11 6 6.4941 -1.5018 -0.5026 12 6 7.4692 -2.4705 -0.6314 13 6 8.7901 -2.1070 -0.8503 14 7 9.7691 -3.0824 -0.9860 15 6 9.1360 -0.7365 -0.9288 16 6 10.4757 -0.3526 -1.1450 17 1 11.1564 -1.0261 -1.6445 18 6 10.9242 0.8980 -0.7074 19 7 10.2105 1.5875 0.1462 20 14 12.5419 1.5843 -1.3412 21 1 12.4758 1.7235 -2.8182 22 1 12.7888 2.9147 -0.7296 23 1 13.6469 0.6603 -0.9801 24 6 8.1315 0.2394 -0.7956 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0100 1.1857 2.0155 31 1 2.7214 2.9427 1.5343 32 1 4.0970 -0.2001 -1.0618 33 1 4.3689 -0.1604 0.6969 34 1 6.0506 1.7626 -0.5076 35 1 5.4676 -1.7940 -0.3372 36 1 7.2022 -3.5150 -0.5669 37 1 10.6925 -2.8254 -1.1349 38 1 9.5296 -4.0208 -0.9319 39 1 10.5213 2.4548 0.4495 40 1 8.3830 1.2878 -0.8577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388176738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:07 Heat of formation + Delta-G solvation = 16.528879 kcal Electronic energy + Delta-G solvation = -18800.717991 eV Core-core repulsion = 16000.217250 eV Total energy + Delta-G solvation = -2800.500742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94285 -39.16723 -36.53868 -35.32340 -33.55203 -32.54469 -31.29358 -29.10855 -26.80188 -25.99504 -24.75394 -23.17795 -22.19764 -21.46297 -20.39662 -18.92644 -17.76570 -17.25125 -16.83993 -16.55233 -16.34519 -15.59892 -15.15515 -15.05137 -14.73486 -14.43937 -14.17051 -13.73058 -13.55737 -13.25718 -13.12185 -12.92856 -12.81623 -12.68875 -12.34191 -12.14911 -12.09682 -11.83809 -11.68748 -11.55593 -11.18014 -10.92868 -10.74083 -10.68697 -9.39576 -9.13391 -8.48169 -7.29815 -6.00286 1.13620 1.41529 1.50678 1.53337 1.66410 2.27820 2.70871 2.93343 3.08432 3.68712 3.77720 3.92079 3.97535 3.99587 4.30079 4.39165 4.48803 4.59690 4.62212 4.77245 4.84409 4.86684 4.92024 4.96389 5.20225 5.22952 5.23908 5.25621 5.31764 5.36235 5.44572 5.52189 5.67675 5.89423 6.06996 6.17798 6.28923 6.57433 6.97607 7.06771 7.13994 7.27353 7.48055 7.67515 8.51886 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.004404 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.804443 B = 6356.321210 C = 7287.449142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.127 4.127 4 H 0.119 0.881 5 C -0.171 4.171 6 C -0.174 4.174 7 H 0.106 0.894 8 C 0.176 3.824 9 N -0.759 5.759 10 C 0.172 3.828 11 C -0.260 4.260 12 C -0.158 4.158 13 C 0.069 3.931 14 N -0.879 5.879 15 C 0.061 3.939 16 C -0.493 4.493 17 H 0.075 0.925 18 C 0.032 3.968 19 N -0.834 5.834 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.261 1.261 24 C -0.227 4.227 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.389 0.611 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 0.095 0.023 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.145 4.145 4 H 0.137 0.863 5 C -0.208 4.208 6 C -0.193 4.193 7 H 0.124 0.876 8 C 0.052 3.948 9 N -0.393 5.393 10 C 0.071 3.929 11 C -0.284 4.284 12 C -0.182 4.182 13 C -0.033 4.033 14 N -0.423 5.423 15 C 0.056 3.944 16 C -0.524 4.524 17 H 0.093 0.907 18 C -0.180 4.180 19 N -0.461 5.461 20 Si 0.798 3.202 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.185 1.185 24 C -0.252 4.252 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.222 0.778 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.914 0.243 0.206 12.918 hybrid contribution 1.248 0.538 -0.115 1.364 sum -11.666 0.781 0.091 11.692 Atomic orbital electron populations 1.21712 0.94120 1.02086 1.02218 1.21161 0.97026 0.93794 1.01820 1.22525 0.91649 0.98790 1.01573 0.86335 1.23236 1.03610 1.02840 0.91110 1.22457 0.94685 0.99344 1.02769 0.87584 1.20539 0.80478 0.94960 0.98831 1.44428 1.05001 1.06181 1.83671 1.17655 0.88215 0.89076 0.97935 1.19908 0.98099 0.90788 1.19630 1.20043 0.91355 0.97941 1.08848 1.18027 0.89472 0.89334 1.06462 1.41673 1.08356 1.05579 1.86685 1.17367 0.93781 0.89674 0.93591 1.19387 0.95934 1.01533 1.35527 0.90717 1.26586 1.02054 0.96573 0.92825 1.69959 1.39593 1.12538 1.24039 0.85350 0.77867 0.77757 0.79198 1.18997 1.19951 1.18493 1.20504 0.90388 0.98906 1.15384 0.92216 0.92268 0.92167 0.92029 0.92271 0.89146 0.87739 0.93529 0.94194 0.77787 0.87748 0.87081 0.78201 0.78190 0.91072 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.87 71.98 0.71 -1.44 16 2 C -0.10 -1.92 5.30 30.59 0.16 -1.76 16 3 C -0.13 -2.52 5.74 -10.79 -0.06 -2.58 16 4 H 0.12 2.00 8.07 -2.39 -0.02 1.98 16 5 C -0.17 -3.69 9.82 30.60 0.30 -3.39 16 6 C -0.17 -4.38 5.85 -10.79 -0.06 -4.45 16 7 H 0.11 2.66 8.04 -2.39 -0.02 2.64 16 8 C 0.18 5.65 4.27 86.38 0.37 6.02 16 9 N -0.76 -30.43 5.74 -339.42 -1.95 -32.37 16 10 C 0.17 8.33 6.64 38.13 0.25 8.58 16 11 C -0.26 -12.00 9.31 22.55 0.21 -11.79 16 12 C -0.16 -7.24 9.86 22.35 0.22 -7.02 16 13 C 0.07 3.41 6.79 38.97 0.26 3.67 16 14 N -0.88 -36.03 8.98 -50.31 -0.45 -36.48 16 15 C 0.06 3.37 5.58 -21.18 -0.12 3.25 16 16 C -0.49 -26.75 8.50 23.35 0.20 -26.55 16 17 H 0.07 3.82 6.66 -2.91 -0.02 3.80 16 18 C 0.03 1.67 5.19 85.23 0.44 2.11 16 19 N -0.83 -45.29 10.88 21.82 0.24 -45.05 16 20 Si 0.98 39.58 29.59 68.60 2.03 41.61 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 C -0.23 -12.43 8.50 22.81 0.19 -12.24 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16 29 H 0.06 1.20 7.88 -2.39 -0.02 1.18 16 30 H 0.09 2.04 7.92 -2.39 -0.02 2.02 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.51 7.39 -2.39 -0.02 1.50 16 33 H 0.04 1.33 7.67 -2.39 -0.02 1.31 16 34 H 0.39 15.13 8.40 -92.71 -0.78 14.35 16 35 H 0.10 4.29 6.69 -2.91 -0.02 4.27 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.39 15.78 7.04 -92.71 -0.65 15.13 16 38 H 0.39 13.19 8.83 -92.71 -0.82 12.37 16 39 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 40 H 0.10 5.71 6.15 -2.92 -0.02 5.69 16 Total: -1.00 -61.54 324.99 1.76 -59.78 By element: Atomic # 1 Polarization: 61.27 SS G_CDS: -1.19 Total: 60.08 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 3.08 Total: -47.57 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -2.16 Total: -113.90 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -61.54 1.76 -59.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388176738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.311 kcal (2) G-P(sol) polarization free energy of solvation -61.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds