Wall clock time and date at job start Mon Mar 30 2020 07:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 H 1.09004 * 115.56233 * 29.31287 * 3 2 1 5 5 C 1.53069 * 117.49747 * 243.60231 * 3 2 1 6 6 C 1.52996 * 59.98812 * 252.51499 * 5 3 2 7 7 H 1.08999 * 117.50002 * 107.49559 * 6 5 3 8 8 C 1.52999 * 117.49760 * 252.49683 * 6 5 3 9 9 N 1.46497 * 109.47274 * 243.73954 * 8 6 5 10 10 C 1.39852 * 120.00054 * 179.97438 * 9 8 6 11 11 C 1.39592 * 119.83902 * 359.97438 * 10 9 8 12 12 C 1.38057 * 120.55018 * 179.97438 * 11 10 9 13 13 C 1.38741 * 120.21884 * 359.72110 * 12 11 10 14 14 N 1.38869 * 120.16377 * 180.28285 * 13 12 11 15 15 C 1.41562 * 119.67236 * 0.57271 * 13 12 11 16 16 C 1.41022 * 120.26755 * 179.70002 * 15 13 12 17 17 H 1.08000 * 120.00310 * 334.14568 * 16 15 13 18 18 C 1.39893 * 119.99920 * 153.86749 * 16 15 13 19 19 N 1.30905 * 119.99907 * 345.04634 * 18 16 15 20 20 Si 1.86795 * 120.00108 * 165.05072 * 18 16 15 21 21 H 1.48499 * 109.47272 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47458 * 119.99764 * 20 18 16 23 23 H 1.48498 * 109.47011 * 240.00210 * 20 18 16 24 24 C 1.38006 * 119.83679 * 180.02562 * 10 9 8 25 25 H 1.09005 * 109.46844 * 300.00235 * 1 2 3 26 26 H 1.09000 * 109.47135 * 59.99651 * 1 2 3 27 27 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46877 * 240.00117 * 2 1 3 29 29 H 1.08998 * 109.46691 * 120.00070 * 2 1 3 30 30 H 1.09001 * 117.52125 * 145.03490 * 5 3 2 31 31 H 1.09011 * 117.48999 * 0.02562 * 5 3 2 32 32 H 1.09008 * 109.46920 * 123.74141 * 8 6 5 33 33 H 1.08996 * 109.47343 * 3.74632 * 8 6 5 34 34 H 0.97006 * 119.99576 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.72703 * 0.02562 * 11 10 9 36 36 H 1.07997 * 119.89270 * 179.97438 * 12 11 10 37 37 H 0.97005 * 119.99348 * 180.29661 * 14 13 12 38 38 H 0.96994 * 120.00338 * 0.28968 * 14 13 12 39 39 H 0.96999 * 119.99686 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.11686 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8447 1.9076 -1.2162 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1964 8 6 4.0301 2.8804 0.9032 9 7 5.4913 2.8523 1.0055 10 6 6.1646 3.8738 1.6830 11 6 5.4411 4.9189 2.2600 12 6 6.0907 5.9345 2.9326 13 6 7.4733 5.9236 3.0471 14 7 8.1251 6.9427 3.7290 15 6 8.2168 4.8716 2.4601 16 6 9.6231 4.8514 2.5633 17 1 10.1681 5.7742 2.6965 18 6 10.3117 3.6354 2.4990 19 7 9.6622 2.5073 2.6376 20 14 12.1579 3.6214 2.2153 21 1 12.6503 5.0169 2.0912 22 1 12.8299 2.9592 3.3620 23 1 12.4612 2.8771 0.9667 24 6 7.5411 3.8443 1.7769 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7226 2.9427 -1.5351 31 1 3.0101 1.1857 -2.0161 32 1 3.5955 2.8639 1.9027 33 1 3.7194 3.7886 0.3869 34 1 5.9917 2.1255 0.6026 35 1 4.3641 4.9326 2.1804 36 1 5.5204 6.7381 3.3747 37 1 9.0923 6.9349 3.8038 38 1 7.6134 7.6624 4.1303 39 1 10.1397 1.6641 2.5927 40 1 8.0976 3.0343 1.3288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388176740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:10 Heat of formation + Delta-G solvation = 31.526955 kcal Electronic energy + Delta-G solvation = -18620.299638 eV Core-core repulsion = 15820.449262 eV Total energy + Delta-G solvation = -2799.850376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.48915 -37.64993 -35.00137 -33.42546 -32.50710 -31.21380 -29.37135 -27.45672 -24.98082 -24.44462 -23.80980 -21.45265 -20.62355 -20.14883 -19.58376 -17.03321 -16.17252 -15.45782 -15.19993 -15.10115 -14.63922 -14.56945 -13.96483 -13.82074 -13.49553 -12.70572 -12.50079 -12.33302 -12.19097 -11.86664 -11.72554 -11.41801 -11.35483 -11.20386 -11.08814 -10.97766 -10.93202 -10.34327 -10.11898 -9.96859 -9.72027 -9.48610 -9.27713 -9.04133 -7.71429 -7.18255 -6.57741 -5.49550 -4.04000 2.92122 3.15387 3.19767 3.33238 3.51345 3.73657 4.05616 4.34827 4.74175 4.84161 4.86940 4.99872 5.08826 5.23791 5.37471 5.45881 5.52972 5.64098 5.81378 5.84205 5.89924 5.91759 6.00529 6.02026 6.21468 6.26484 6.39630 6.42733 6.66700 7.15649 7.18868 7.35802 7.52750 7.74045 7.91947 8.04239 8.16404 8.49443 8.79568 8.94348 8.98036 9.03685 9.29107 9.37466 10.40673 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.004168 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.850045 B = 6715.727324 C = 7634.902956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.147 4.147 4 H 0.104 0.896 5 C -0.174 4.174 6 C -0.155 4.155 7 H 0.106 0.894 8 C 0.171 3.829 9 N -0.761 5.761 10 C 0.177 3.823 11 C -0.255 4.255 12 C -0.153 4.153 13 C 0.085 3.915 14 N -0.889 5.889 15 C 0.094 3.906 16 C -0.463 4.463 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.801 5.801 20 Si 0.902 3.098 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.275 1.275 24 C -0.200 4.200 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.388 0.612 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.388 0.612 38 H 0.374 0.626 39 H 0.274 0.726 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.674 -3.207 -4.525 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.166 4.166 4 H 0.122 0.878 5 C -0.211 4.211 6 C -0.173 4.173 7 H 0.124 0.876 8 C 0.045 3.955 9 N -0.396 5.396 10 C 0.078 3.922 11 C -0.279 4.279 12 C -0.177 4.177 13 C -0.016 4.016 14 N -0.432 5.432 15 C 0.089 3.911 16 C -0.494 4.494 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.727 3.273 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.201 1.201 24 C -0.225 4.225 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.221 0.779 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.216 0.784 38 H 0.199 0.801 39 H 0.084 0.916 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.842 -3.463 -4.529 12.250 hybrid contribution 1.163 -0.129 -0.025 1.170 sum -9.679 -3.592 -4.554 11.284 Atomic orbital electron populations 1.21744 0.95623 1.01357 1.01873 1.21115 0.95792 0.94314 1.01927 1.22455 0.93518 0.97915 1.02696 0.87782 1.23216 1.04230 1.02223 0.91441 1.22612 0.94630 1.00510 0.99582 0.87625 1.20519 0.82969 0.94319 0.97675 1.44300 1.03505 1.27631 1.64169 1.17523 0.91548 0.88456 0.94654 1.19608 0.96426 0.98896 1.12991 1.19700 0.92146 0.99788 1.06109 1.17867 0.90697 0.93187 0.99876 1.41808 1.08532 1.27433 1.65418 1.16981 0.92777 0.90367 0.91010 1.19160 0.91626 0.93129 1.45492 0.91105 1.25752 1.00136 0.95275 0.92874 1.69891 1.37527 0.98418 1.37001 0.86373 0.83213 0.79206 0.78461 1.18765 1.20365 1.20055 1.20532 0.90217 1.03787 1.07935 0.92660 0.92717 0.92904 0.92015 0.91619 0.88798 0.89096 0.93354 0.93588 0.77919 0.89808 0.89814 0.78353 0.80134 0.91569 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.87 37.16 0.37 -0.85 16 2 C -0.09 -0.90 6.22 -26.73 -0.17 -1.06 16 3 C -0.15 -1.62 5.46 -90.58 -0.49 -2.11 16 4 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 5 C -0.17 -1.98 9.83 -26.70 -0.26 -2.24 16 6 C -0.15 -2.03 5.56 -90.62 -0.50 -2.53 16 7 H 0.11 1.40 8.04 -51.93 -0.42 0.98 16 8 C 0.17 2.79 5.19 -4.04 -0.02 2.76 16 9 N -0.76 -15.11 5.74 -58.64 -0.34 -15.45 16 10 C 0.18 4.23 6.64 -83.78 -0.56 3.67 16 11 C -0.26 -5.97 9.31 -39.14 -0.36 -6.33 16 12 C -0.15 -3.60 9.86 -39.46 -0.39 -3.99 16 13 C 0.08 2.09 6.79 -83.22 -0.56 1.53 16 14 N -0.89 -18.57 8.98 32.75 0.29 -18.27 16 15 C 0.09 2.53 5.58 -106.66 -0.60 1.94 16 16 C -0.46 -12.31 8.49 -37.91 -0.32 -12.63 16 17 H 0.07 1.80 6.68 -52.49 -0.35 1.45 16 18 C 0.07 1.92 5.19 -17.33 -0.09 1.83 16 19 N -0.80 -21.20 10.88 55.55 0.60 -20.59 16 20 Si 0.90 19.14 29.59 -169.99 -5.03 14.12 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.07 8.03 -51.93 -0.42 0.66 16 31 H 0.09 0.94 8.03 -51.92 -0.42 0.53 16 32 H 0.05 0.82 7.94 -51.92 -0.41 0.41 16 33 H 0.05 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.39 7.37 8.41 -40.82 -0.34 7.03 16 35 H 0.08 1.78 6.69 -52.49 -0.35 1.43 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.39 7.94 7.05 -40.82 -0.29 7.65 16 38 H 0.37 6.61 8.83 -40.82 -0.36 6.25 16 39 H 0.27 6.64 8.30 -40.82 -0.34 6.31 16 40 H 0.12 3.27 6.15 -52.49 -0.32 2.94 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -28.48 327.38 -9.98 -38.46 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -6.15 Total: 22.45 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -4.29 Total: -25.64 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.56 Total: -54.31 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.48 -9.98 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388176740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.985 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds