Wall clock time and date at job start Mon Mar 30 2020 07:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 H 1.09004 * 115.56233 * 29.31287 * 3 2 1 5 5 C 1.53069 * 117.49747 * 243.60231 * 3 2 1 6 6 C 1.52996 * 59.98812 * 252.51499 * 5 3 2 7 7 H 1.08999 * 117.50002 * 107.49559 * 6 5 3 8 8 C 1.52999 * 117.49760 * 252.49683 * 6 5 3 9 9 N 1.46497 * 109.47274 * 243.73954 * 8 6 5 10 10 C 1.39852 * 120.00054 * 179.97438 * 9 8 6 11 11 C 1.39592 * 119.83902 * 359.97438 * 10 9 8 12 12 C 1.38057 * 120.55018 * 179.97438 * 11 10 9 13 13 C 1.38741 * 120.21884 * 359.72110 * 12 11 10 14 14 N 1.38869 * 120.16377 * 180.28285 * 13 12 11 15 15 C 1.41562 * 119.67236 * 0.57271 * 13 12 11 16 16 C 1.41022 * 120.26755 * 179.70002 * 15 13 12 17 17 H 1.08000 * 120.00310 * 334.14568 * 16 15 13 18 18 C 1.39893 * 119.99920 * 153.86749 * 16 15 13 19 19 N 1.30905 * 119.99907 * 345.04634 * 18 16 15 20 20 Si 1.86795 * 120.00108 * 165.05072 * 18 16 15 21 21 H 1.48499 * 109.47272 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47458 * 119.99764 * 20 18 16 23 23 H 1.48498 * 109.47011 * 240.00210 * 20 18 16 24 24 C 1.38006 * 119.83679 * 180.02562 * 10 9 8 25 25 H 1.09005 * 109.46844 * 300.00235 * 1 2 3 26 26 H 1.09000 * 109.47135 * 59.99651 * 1 2 3 27 27 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46877 * 240.00117 * 2 1 3 29 29 H 1.08998 * 109.46691 * 120.00070 * 2 1 3 30 30 H 1.09001 * 117.52125 * 145.03490 * 5 3 2 31 31 H 1.09011 * 117.48999 * 0.02562 * 5 3 2 32 32 H 1.09008 * 109.46920 * 123.74141 * 8 6 5 33 33 H 1.08996 * 109.47343 * 3.74632 * 8 6 5 34 34 H 0.97006 * 119.99576 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.72703 * 0.02562 * 11 10 9 36 36 H 1.07997 * 119.89270 * 179.97438 * 12 11 10 37 37 H 0.97005 * 119.99348 * 180.29661 * 14 13 12 38 38 H 0.96994 * 120.00338 * 0.28968 * 14 13 12 39 39 H 0.96999 * 119.99686 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.11686 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8447 1.9076 -1.2162 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1964 8 6 4.0301 2.8804 0.9032 9 7 5.4913 2.8523 1.0055 10 6 6.1646 3.8738 1.6830 11 6 5.4411 4.9189 2.2600 12 6 6.0907 5.9345 2.9326 13 6 7.4733 5.9236 3.0471 14 7 8.1251 6.9427 3.7290 15 6 8.2168 4.8716 2.4601 16 6 9.6231 4.8514 2.5633 17 1 10.1681 5.7742 2.6965 18 6 10.3117 3.6354 2.4990 19 7 9.6622 2.5073 2.6376 20 14 12.1579 3.6214 2.2153 21 1 12.6503 5.0169 2.0912 22 1 12.8299 2.9592 3.3620 23 1 12.4612 2.8771 0.9667 24 6 7.5411 3.8443 1.7769 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7226 2.9427 -1.5351 31 1 3.0101 1.1857 -2.0161 32 1 3.5955 2.8639 1.9027 33 1 3.7194 3.7886 0.3869 34 1 5.9917 2.1255 0.6026 35 1 4.3641 4.9326 2.1804 36 1 5.5204 6.7381 3.3747 37 1 9.0923 6.9349 3.8038 38 1 7.6134 7.6624 4.1303 39 1 10.1397 1.6641 2.5927 40 1 8.0976 3.0343 1.3288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388176740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:10 Heat of formation + Delta-G solvation = 15.761126 kcal Electronic energy + Delta-G solvation = -18620.983295 eV Core-core repulsion = 15820.449262 eV Total energy + Delta-G solvation = -2800.534034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89334 -39.09375 -36.59741 -35.32425 -33.71503 -32.50760 -31.29459 -29.06371 -26.80790 -26.00891 -24.61748 -23.17443 -21.73664 -21.44715 -21.14438 -18.90199 -17.86077 -17.24879 -16.70065 -16.52027 -16.22554 -15.53781 -15.37456 -14.97260 -14.74044 -14.34250 -14.16883 -13.70342 -13.65054 -13.26605 -13.10517 -12.92055 -12.85943 -12.70013 -12.30210 -12.15528 -12.04999 -11.86884 -11.73203 -11.57932 -11.18154 -10.94473 -10.80012 -10.63733 -9.39910 -9.13203 -8.48578 -7.29930 -6.00508 1.11726 1.41676 1.50682 1.55275 1.65274 2.27794 2.69889 2.91981 3.07368 3.69407 3.78091 3.91887 3.98676 4.03371 4.30189 4.37057 4.48179 4.55010 4.62181 4.79998 4.83004 4.85954 4.91004 4.97787 5.17083 5.23145 5.24276 5.25332 5.31560 5.36274 5.44639 5.52018 5.67463 5.89192 6.06863 6.17402 6.28856 6.57410 6.97664 7.06556 7.13779 7.26914 7.47729 7.67294 8.51944 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.004168 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.850045 B = 6715.727324 C = 7634.902956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.132 4.132 4 H 0.108 0.892 5 C -0.166 4.166 6 C -0.171 4.171 7 H 0.103 0.897 8 C 0.173 3.827 9 N -0.758 5.758 10 C 0.171 3.829 11 C -0.260 4.260 12 C -0.158 4.158 13 C 0.070 3.930 14 N -0.879 5.879 15 C 0.059 3.941 16 C -0.490 4.490 17 H 0.074 0.926 18 C 0.031 3.969 19 N -0.834 5.834 20 Si 0.977 3.023 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.226 4.226 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.389 0.611 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.537 -3.136 -4.914 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.151 4.151 4 H 0.126 0.874 5 C -0.203 4.203 6 C -0.190 4.190 7 H 0.121 0.879 8 C 0.049 3.951 9 N -0.392 5.392 10 C 0.071 3.929 11 C -0.284 4.284 12 C -0.182 4.182 13 C -0.032 4.032 14 N -0.423 5.423 15 C 0.054 3.946 16 C -0.521 4.521 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.462 5.462 20 Si 0.799 3.201 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.251 4.251 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.222 0.778 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.739 -3.380 -4.916 13.167 hybrid contribution 1.313 -0.144 0.099 1.324 sum -10.426 -3.524 -4.816 12.013 Atomic orbital electron populations 1.21729 0.94437 1.02137 1.02085 1.21144 0.96800 0.93175 1.02062 1.22549 0.91788 0.98989 1.01768 0.87435 1.23286 1.03122 1.02700 0.91212 1.22447 0.96294 0.99115 1.01126 0.87926 1.20600 0.80633 0.95979 0.97922 1.44410 1.05039 1.26589 1.63178 1.17653 0.91108 0.89516 0.94640 1.19917 0.97536 0.98530 1.12399 1.20049 0.91982 1.00472 1.05726 1.18039 0.91400 0.93585 1.00216 1.41679 1.08715 1.27069 1.64833 1.17383 0.93618 0.91585 0.91990 1.19417 0.92034 0.93830 1.46863 0.90762 1.26595 1.04837 0.94588 0.92107 1.69975 1.39494 0.99078 1.37651 0.85243 0.77177 0.79328 0.78368 1.18191 1.19694 1.19663 1.20503 0.91411 1.03829 1.09320 0.92658 0.92303 0.91901 0.91451 0.91983 0.88753 0.87824 0.93974 0.93581 0.77772 0.87695 0.87067 0.78191 0.78185 0.91103 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.87 71.98 0.71 -1.35 16 2 C -0.09 -1.61 6.22 30.60 0.19 -1.42 16 3 C -0.13 -2.66 5.46 -10.77 -0.06 -2.72 16 4 H 0.11 2.11 8.08 -2.39 -0.02 2.09 16 5 C -0.17 -3.48 9.83 30.62 0.30 -3.17 16 6 C -0.17 -4.32 5.56 -10.79 -0.06 -4.38 16 7 H 0.10 2.66 8.04 -2.39 -0.02 2.64 16 8 C 0.17 5.54 5.19 86.38 0.45 5.99 16 9 N -0.76 -30.36 5.74 -339.44 -1.95 -32.31 16 10 C 0.17 8.30 6.64 38.13 0.25 8.56 16 11 C -0.26 -11.97 9.31 22.55 0.21 -11.76 16 12 C -0.16 -7.26 9.86 22.35 0.22 -7.04 16 13 C 0.07 3.44 6.79 38.97 0.26 3.71 16 14 N -0.88 -36.08 8.98 -50.30 -0.45 -36.53 16 15 C 0.06 3.28 5.58 -21.18 -0.12 3.16 16 16 C -0.49 -26.61 8.49 23.35 0.20 -26.41 16 17 H 0.07 3.82 6.68 -2.91 -0.02 3.80 16 18 C 0.03 1.61 5.19 85.23 0.44 2.05 16 19 N -0.83 -45.31 10.88 21.82 0.24 -45.07 16 20 Si 0.98 39.65 29.59 68.60 2.03 41.68 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 24 C -0.23 -12.36 8.50 22.81 0.19 -12.16 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 1.08 7.88 -2.39 -0.02 1.06 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.98 8.03 -2.39 -0.02 1.96 16 31 H 0.10 1.91 8.03 -2.38 -0.02 1.89 16 32 H 0.04 1.40 7.94 -2.38 -0.02 1.38 16 33 H 0.05 1.48 7.67 -2.39 -0.02 1.46 16 34 H 0.39 15.14 8.41 -92.70 -0.78 14.36 16 35 H 0.11 4.30 6.69 -2.91 -0.02 4.28 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.39 15.81 7.05 -92.70 -0.65 15.16 16 38 H 0.39 13.20 8.83 -92.71 -0.82 12.38 16 39 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 40 H 0.10 5.71 6.15 -2.91 -0.02 5.69 16 Total: -1.00 -61.51 327.38 1.87 -59.64 By element: Atomic # 1 Polarization: 60.72 SS G_CDS: -1.19 Total: 59.53 kcal Atomic # 6 Polarization: -50.13 SS G_CDS: 3.19 Total: -46.94 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -2.16 Total: -113.91 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -61.51 1.87 -59.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388176740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.400 kcal (2) G-P(sol) polarization free energy of solvation -61.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds