Wall clock time and date at job start Mon Mar 30 2020 07:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00097 * 2 1 4 4 C 1.52996 * 109.47416 * 124.99852 * 3 2 1 5 5 H 1.09000 * 109.47454 * 54.99776 * 4 3 2 6 6 C 1.52998 * 109.47119 * 175.00133 * 4 3 2 7 7 C 1.53004 * 109.47168 * 184.93550 * 6 4 3 8 8 N 1.46500 * 109.46959 * 294.99586 * 4 3 2 9 9 C 1.39857 * 119.99495 * 122.25347 * 8 4 3 10 10 C 1.39594 * 119.84444 * 353.46415 * 9 8 4 11 11 C 1.38057 * 120.55373 * 179.97438 * 10 9 8 12 12 C 1.38731 * 120.21827 * 0.02682 * 11 10 9 13 13 N 1.38863 * 120.16339 * 179.97438 * 12 11 10 14 14 C 1.41557 * 119.67633 * 359.97438 * 12 11 10 15 15 C 1.41024 * 120.27220 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99438 * 27.78599 * 15 14 12 17 17 C 1.39889 * 120.00655 * 207.78716 * 15 14 12 18 18 N 1.30899 * 119.99728 * 12.69439 * 17 15 14 19 19 Si 1.86794 * 120.00215 * 192.70117 * 17 15 14 20 20 H 1.48496 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47355 * 119.99677 * 19 17 15 22 22 H 1.48507 * 109.47109 * 239.99604 * 19 17 15 23 23 C 1.38005 * 119.83778 * 173.18466 * 9 8 4 24 24 H 1.08001 * 119.99809 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99886 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00148 * 179.71785 * 2 1 3 27 27 H 1.09004 * 109.46981 * 244.99957 * 3 2 1 28 28 H 1.09002 * 109.46872 * 4.99274 * 3 2 1 29 29 H 1.08999 * 109.47235 * 304.93996 * 6 4 3 30 30 H 1.08998 * 109.47427 * 64.94017 * 6 4 3 31 31 H 1.09000 * 109.47250 * 303.94324 * 7 6 4 32 32 H 1.09001 * 109.46920 * 63.94141 * 7 6 4 33 33 H 1.08995 * 109.47100 * 183.93551 * 7 6 4 34 34 H 0.97000 * 120.00920 * 302.26272 * 8 4 3 35 35 H 1.08012 * 119.72355 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.88902 * 180.02562 * 11 10 9 37 37 H 0.97003 * 120.00122 * 359.97438 * 13 12 11 38 38 H 0.97000 * 120.00192 * 179.97438 * 13 12 11 39 39 H 0.96995 * 120.00349 * 180.02562 * 18 17 15 40 40 H 1.08006 * 120.11819 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 6 3.8875 2.6017 1.1109 7 6 4.9410 2.5707 2.2202 8 7 2.2786 1.3225 2.4361 9 6 2.4940 0.3076 3.3739 10 6 3.3271 -0.7664 3.0562 11 6 3.5505 -1.7760 3.9710 12 6 2.9466 -1.7333 5.2192 13 7 3.1717 -2.7496 6.1383 14 6 2.1000 -0.6485 5.5515 15 6 1.4802 -0.5922 6.8170 16 1 1.9461 -1.0666 7.6680 17 6 0.2620 0.0782 6.9700 18 7 -0.4253 0.4358 5.9149 19 14 -0.3839 0.4631 8.6800 20 1 0.5730 -0.0435 9.6962 21 1 -0.5366 1.9323 8.8323 22 1 -1.7020 -0.1939 8.8708 23 6 1.8865 0.3757 4.6112 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9353 0.0046 27 1 2.6214 1.4026 -0.9314 28 1 1.3586 2.1316 0.0894 29 1 4.3824 2.6533 0.1412 30 1 3.2495 3.4759 1.2402 31 1 4.4490 2.4486 3.1851 32 1 5.6219 1.7364 2.0514 33 1 5.5025 3.5049 2.2141 34 1 1.6282 2.0192 2.6163 35 1 3.8010 -0.8080 2.0864 36 1 4.1974 -2.6018 3.7140 37 1 3.7520 -3.4920 5.9081 38 1 2.7485 -2.7172 7.0106 39 1 -1.2698 0.9010 6.0210 40 1 1.2458 1.2103 4.8551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393788094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:25 Heat of formation + Delta-G solvation = 31.168503 kcal Electronic energy + Delta-G solvation = -19595.155547 eV Core-core repulsion = 16795.289627 eV Total energy + Delta-G solvation = -2799.865920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.32714 -36.81188 -33.86707 -33.39317 -32.89713 -30.62191 -29.36189 -28.36275 -25.85723 -24.74342 -23.35391 -21.57386 -20.21281 -19.44964 -19.37425 -17.11214 -15.96879 -15.62934 -15.20544 -14.92276 -14.60101 -14.23191 -14.09447 -13.34344 -13.16466 -12.71573 -12.35587 -12.07903 -11.94280 -11.86507 -11.60097 -11.37538 -11.10744 -11.04519 -10.96494 -10.68258 -10.61164 -10.37282 -10.16539 -9.80151 -9.73460 -9.21898 -9.04245 -8.90434 -7.68018 -7.15171 -6.54879 -5.46003 -4.03470 2.72086 2.93106 3.15830 3.19986 3.33979 3.53466 4.06853 4.51029 4.86869 5.00744 5.36381 5.44783 5.45904 5.47919 5.64136 5.77575 5.91470 5.96184 5.96863 6.16403 6.20407 6.23986 6.35274 6.43372 6.47982 6.69503 6.74491 7.01979 7.15723 7.18325 7.22544 7.37514 7.54641 7.77583 7.92932 8.05812 8.19436 8.51319 8.82143 8.97206 9.00753 9.05627 9.30193 9.39038 10.43718 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.006219 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.693494 B = 4501.082837 C = 4821.855948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.105 4.105 4 C 0.157 3.843 5 H 0.089 0.911 6 C -0.133 4.133 7 C -0.146 4.146 8 N -0.750 5.750 9 C 0.185 3.815 10 C -0.254 4.254 11 C -0.154 4.154 12 C 0.084 3.916 13 N -0.890 5.890 14 C 0.094 3.906 15 C -0.464 4.464 16 H 0.069 0.931 17 C 0.075 3.925 18 N -0.803 5.803 19 Si 0.901 3.099 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.278 1.278 23 C -0.197 4.197 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.385 0.615 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.373 0.627 38 H 0.388 0.612 39 H 0.273 0.727 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 2.308 -7.664 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.151 4.151 3 C -0.144 4.144 4 C 0.050 3.950 5 H 0.106 0.894 6 C -0.172 4.172 7 C -0.204 4.204 8 N -0.383 5.383 9 C 0.086 3.914 10 C -0.278 4.278 11 C -0.178 4.178 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.089 3.911 15 C -0.496 4.496 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.431 5.431 19 Si 0.727 3.273 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.204 1.204 23 C -0.221 4.221 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.218 0.782 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.083 0.917 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.878 2.428 -7.888 9.119 hybrid contribution -0.701 0.101 1.049 1.266 sum 3.177 2.529 -6.839 7.954 Atomic orbital electron populations 1.23645 0.95996 1.01132 1.02619 1.22734 0.95888 0.98053 0.98416 1.21228 0.98848 0.95723 0.98583 1.20750 0.92147 0.97851 0.84286 0.89354 1.21954 0.97936 0.98734 0.98572 1.21674 0.98323 1.00241 1.00113 1.44282 1.46280 1.30044 1.17658 1.17461 0.96435 0.88324 0.89136 1.19640 1.10397 0.98445 0.99291 1.19702 1.04562 0.99591 0.93969 1.17871 1.02731 0.90969 0.90084 1.41811 1.57828 1.25723 1.17856 1.16979 0.91325 0.89102 0.93714 1.19149 1.04149 1.31203 0.95052 0.91247 1.25726 0.96469 0.94071 0.97746 1.69876 1.12103 1.31030 1.30070 0.86387 0.78923 0.78705 0.83307 1.18821 1.20132 1.20397 1.20528 1.07529 1.01337 0.92747 0.89241 0.89103 0.87852 0.91239 0.91920 0.92328 0.92481 0.91467 0.93171 0.93911 0.78172 0.89639 0.89995 0.80195 0.78385 0.91664 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 14.32 29.01 0.42 -2.55 16 2 C -0.13 -2.00 9.25 -36.03 -0.33 -2.34 16 3 C -0.11 -1.42 5.34 -27.88 -0.15 -1.56 16 4 C 0.16 2.37 2.27 -67.93 -0.15 2.22 16 5 H 0.09 1.44 5.30 -51.93 -0.28 1.16 16 6 C -0.13 -1.75 5.61 -26.73 -0.15 -1.90 16 7 C -0.15 -2.09 9.85 37.16 0.37 -1.73 16 8 N -0.75 -13.85 4.18 -52.17 -0.22 -14.06 16 9 C 0.18 4.18 6.63 -83.78 -0.56 3.62 16 10 C -0.25 -5.64 9.30 -39.14 -0.36 -6.00 16 11 C -0.15 -3.52 9.86 -39.47 -0.39 -3.91 16 12 C 0.08 2.05 6.79 -83.23 -0.56 1.48 16 13 N -0.89 -18.41 8.98 32.74 0.29 -18.12 16 14 C 0.09 2.50 5.56 -106.66 -0.59 1.90 16 15 C -0.46 -12.28 8.45 -37.91 -0.32 -12.60 16 16 H 0.07 1.76 6.74 -52.48 -0.35 1.41 16 17 C 0.07 1.91 5.22 -17.33 -0.09 1.82 16 18 N -0.80 -21.20 10.90 55.55 0.61 -20.59 16 19 Si 0.90 19.22 29.58 -169.99 -5.03 14.19 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 C -0.20 -5.07 8.48 -38.75 -0.33 -5.40 16 24 H 0.09 1.27 7.84 -52.49 -0.41 0.86 16 25 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.83 7.79 -51.93 -0.40 0.42 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.15 7.64 -51.93 -0.40 0.75 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.39 7.09 8.84 -40.82 -0.36 6.73 16 35 H 0.09 1.73 5.74 -52.48 -0.30 1.43 16 36 H 0.08 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.37 6.55 8.83 -40.82 -0.36 6.19 16 38 H 0.39 7.92 7.08 -40.82 -0.29 7.63 16 39 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.12 3.16 6.23 -52.48 -0.33 2.83 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -27.66 327.10 -8.63 -36.29 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -6.00 Total: 24.31 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.21 Total: -26.94 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.68 Total: -52.78 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.66 -8.63 -36.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.459 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds