Wall clock time and date at job start Mon Mar 30 2020 07:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00097 * 2 1 4 4 C 1.52996 * 109.47416 * 124.99852 * 3 2 1 5 5 H 1.09000 * 109.47454 * 54.99776 * 4 3 2 6 6 C 1.52998 * 109.47119 * 175.00133 * 4 3 2 7 7 C 1.53004 * 109.47168 * 184.93550 * 6 4 3 8 8 N 1.46500 * 109.46959 * 294.99586 * 4 3 2 9 9 C 1.39857 * 119.99495 * 122.25347 * 8 4 3 10 10 C 1.39594 * 119.84444 * 353.46415 * 9 8 4 11 11 C 1.38057 * 120.55373 * 179.97438 * 10 9 8 12 12 C 1.38731 * 120.21827 * 0.02682 * 11 10 9 13 13 N 1.38863 * 120.16339 * 179.97438 * 12 11 10 14 14 C 1.41557 * 119.67633 * 359.97438 * 12 11 10 15 15 C 1.41024 * 120.27220 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99438 * 27.78599 * 15 14 12 17 17 C 1.39889 * 120.00655 * 207.78716 * 15 14 12 18 18 N 1.30899 * 119.99728 * 12.69439 * 17 15 14 19 19 Si 1.86794 * 120.00215 * 192.70117 * 17 15 14 20 20 H 1.48496 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47355 * 119.99677 * 19 17 15 22 22 H 1.48507 * 109.47109 * 239.99604 * 19 17 15 23 23 C 1.38005 * 119.83778 * 173.18466 * 9 8 4 24 24 H 1.08001 * 119.99809 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99886 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00148 * 179.71785 * 2 1 3 27 27 H 1.09004 * 109.46981 * 244.99957 * 3 2 1 28 28 H 1.09002 * 109.46872 * 4.99274 * 3 2 1 29 29 H 1.08999 * 109.47235 * 304.93996 * 6 4 3 30 30 H 1.08998 * 109.47427 * 64.94017 * 6 4 3 31 31 H 1.09000 * 109.47250 * 303.94324 * 7 6 4 32 32 H 1.09001 * 109.46920 * 63.94141 * 7 6 4 33 33 H 1.08995 * 109.47100 * 183.93551 * 7 6 4 34 34 H 0.97000 * 120.00920 * 302.26272 * 8 4 3 35 35 H 1.08012 * 119.72355 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.88902 * 180.02562 * 11 10 9 37 37 H 0.97003 * 120.00122 * 359.97438 * 13 12 11 38 38 H 0.97000 * 120.00192 * 179.97438 * 13 12 11 39 39 H 0.96995 * 120.00349 * 180.02562 * 18 17 15 40 40 H 1.08006 * 120.11819 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 6 3.8875 2.6017 1.1109 7 6 4.9410 2.5707 2.2202 8 7 2.2786 1.3225 2.4361 9 6 2.4940 0.3076 3.3739 10 6 3.3271 -0.7664 3.0562 11 6 3.5505 -1.7760 3.9710 12 6 2.9466 -1.7333 5.2192 13 7 3.1717 -2.7496 6.1383 14 6 2.1000 -0.6485 5.5515 15 6 1.4802 -0.5922 6.8170 16 1 1.9461 -1.0666 7.6680 17 6 0.2620 0.0782 6.9700 18 7 -0.4253 0.4358 5.9149 19 14 -0.3839 0.4631 8.6800 20 1 0.5730 -0.0435 9.6962 21 1 -0.5366 1.9323 8.8323 22 1 -1.7020 -0.1939 8.8708 23 6 1.8865 0.3757 4.6112 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9353 0.0046 27 1 2.6214 1.4026 -0.9314 28 1 1.3586 2.1316 0.0894 29 1 4.3824 2.6533 0.1412 30 1 3.2495 3.4759 1.2402 31 1 4.4490 2.4486 3.1851 32 1 5.6219 1.7364 2.0514 33 1 5.5025 3.5049 2.2141 34 1 1.6282 2.0192 2.6163 35 1 3.8010 -0.8080 2.0864 36 1 4.1974 -2.6018 3.7140 37 1 3.7520 -3.4920 5.9081 38 1 2.7485 -2.7172 7.0106 39 1 -1.2698 0.9010 6.0210 40 1 1.2458 1.2103 4.8551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393788094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:24 Heat of formation + Delta-G solvation = 16.029185 kcal Electronic energy + Delta-G solvation = -19595.812037 eV Core-core repulsion = 16795.289627 eV Total energy + Delta-G solvation = -2800.522410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94232 -38.31051 -35.39959 -35.19873 -34.21473 -32.12834 -31.24490 -29.65455 -27.57866 -26.53990 -24.53598 -23.27184 -21.78935 -21.02598 -20.56737 -18.90391 -17.71746 -17.28435 -16.80350 -16.37678 -16.31832 -15.51616 -15.29570 -14.79227 -14.48311 -14.29278 -14.03394 -13.69370 -13.57878 -13.23133 -13.15422 -12.92014 -12.75934 -12.68339 -12.30643 -12.09051 -11.87344 -11.82918 -11.62271 -11.47424 -11.25147 -10.98904 -10.91520 -10.10910 -9.28364 -9.05914 -8.44495 -7.19708 -5.97566 1.15375 1.40748 1.52305 1.53454 1.54978 1.71482 2.28489 2.96384 3.07905 3.80021 3.86240 4.01001 4.22859 4.30311 4.34930 4.51039 4.60046 4.67700 4.79098 4.89444 4.95830 5.04450 5.12313 5.16105 5.21110 5.28056 5.35654 5.42161 5.51342 5.54464 5.74033 5.84763 5.96047 6.00948 6.12858 6.24419 6.36761 6.62671 7.02931 7.13268 7.22376 7.36628 7.53549 7.70274 8.55870 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.006219 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.693494 B = 4501.082837 C = 4821.855948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.098 4.098 4 C 0.155 3.845 5 H 0.080 0.920 6 C -0.126 4.126 7 C -0.144 4.144 8 N -0.744 5.744 9 C 0.190 3.810 10 C -0.254 4.254 11 C -0.160 4.160 12 C 0.067 3.933 13 N -0.881 5.881 14 C 0.058 3.942 15 C -0.492 4.492 16 H 0.070 0.930 17 C 0.031 3.969 18 N -0.836 5.836 19 Si 0.973 3.027 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.222 4.222 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.384 0.616 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.389 0.611 38 H 0.389 0.611 39 H 0.276 0.724 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.853 2.683 -8.786 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.159 4.159 3 C -0.136 4.136 4 C 0.049 3.951 5 H 0.098 0.902 6 C -0.164 4.164 7 C -0.202 4.202 8 N -0.376 5.376 9 C 0.089 3.911 10 C -0.277 4.277 11 C -0.184 4.184 12 C -0.035 4.035 13 N -0.425 5.425 14 C 0.053 3.947 15 C -0.524 4.524 16 H 0.088 0.912 17 C -0.181 4.181 18 N -0.465 5.465 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.247 4.247 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.217 0.783 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.217 0.783 38 H 0.216 0.784 39 H 0.086 0.914 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.753 2.796 -9.042 10.591 hybrid contribution -0.888 -0.026 1.267 1.548 sum 3.865 2.770 -7.775 9.113 Atomic orbital electron populations 1.23773 0.96325 1.01476 1.02934 1.22903 0.96024 0.98764 0.98197 1.21188 0.98601 0.94850 0.98949 1.20955 0.92309 0.98672 0.83155 0.90229 1.21902 0.97364 0.97563 0.99595 1.21644 0.98589 1.01221 0.98731 1.44364 1.46326 1.28799 1.18139 1.17480 0.95475 0.89261 0.88859 1.19949 1.09785 0.97829 1.00165 1.20058 1.04416 1.00434 0.93477 1.18044 1.02822 0.91376 0.91290 1.41686 1.57947 1.25512 1.17331 1.17365 0.92657 0.90339 0.94373 1.19380 1.05012 1.32615 0.95345 0.91205 1.26517 0.96418 0.93583 1.01533 1.69966 1.12570 1.31852 1.32076 0.85301 0.78259 0.78406 0.78497 1.18321 1.19772 1.19840 1.20483 1.08606 1.01131 0.94437 0.88551 0.89332 0.88403 0.88201 0.91458 0.89226 0.91962 0.94967 0.93268 0.92077 0.78319 0.87287 0.87499 0.78333 0.78359 0.91359 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.08 14.32 67.78 0.97 -5.11 16 2 C -0.14 -4.02 9.25 25.64 0.24 -3.78 16 3 C -0.10 -2.35 5.34 29.85 0.16 -2.19 16 4 C 0.15 4.33 2.27 44.99 0.10 4.43 16 5 H 0.08 2.39 5.30 -2.39 -0.01 2.38 16 6 C -0.13 -2.92 5.61 30.59 0.17 -2.75 16 7 C -0.14 -3.88 9.85 71.98 0.71 -3.17 16 8 N -0.74 -27.13 4.18 -318.98 -1.33 -28.47 16 9 C 0.19 8.63 6.63 38.13 0.25 8.89 16 10 C -0.25 -11.02 9.30 22.55 0.21 -10.81 16 11 C -0.16 -7.15 9.86 22.34 0.22 -6.93 16 12 C 0.07 3.25 6.79 38.96 0.26 3.51 16 13 N -0.88 -36.23 8.98 -50.32 -0.45 -36.68 16 14 C 0.06 3.16 5.56 -21.18 -0.12 3.04 16 15 C -0.49 -26.78 8.45 23.35 0.20 -26.58 16 16 H 0.07 3.64 6.74 -2.91 -0.02 3.62 16 17 C 0.03 1.63 5.22 85.23 0.44 2.07 16 18 N -0.84 -45.54 10.90 21.82 0.24 -45.31 16 19 Si 0.97 40.16 29.58 68.60 2.03 42.19 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 C -0.22 -11.82 8.48 22.81 0.19 -11.62 16 24 H 0.10 2.64 7.84 -2.91 -0.02 2.62 16 25 H 0.09 2.57 8.06 -2.91 -0.02 2.55 16 26 H 0.10 2.88 8.06 -2.91 -0.02 2.86 16 27 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.07 1.59 7.79 -2.39 -0.02 1.57 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.03 1.08 7.64 -2.39 -0.02 1.06 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.38 14.17 8.84 -92.71 -0.82 13.35 16 35 H 0.11 4.17 5.74 -2.90 -0.02 4.16 16 36 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.39 13.24 8.83 -92.71 -0.82 12.42 16 38 H 0.39 15.93 7.08 -92.71 -0.66 15.27 16 39 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.09 5.34 6.23 -2.91 -0.02 5.33 16 Total: -1.00 -60.85 327.10 3.26 -57.59 By element: Atomic # 1 Polarization: 62.91 SS G_CDS: -1.24 Total: 61.67 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 4.01 Total: -51.00 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -1.55 Total: -110.45 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -60.85 3.26 -57.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.620 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds