Wall clock time and date at job start Mon Mar 30 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00061 * 2 1 4 4 C 1.52998 * 109.46820 * 125.00079 * 3 2 1 5 5 H 1.08998 * 109.47106 * 304.99525 * 4 3 2 6 6 C 1.53008 * 109.46818 * 184.99833 * 4 3 2 7 7 C 1.52998 * 109.46907 * 176.88669 * 6 4 3 8 8 N 1.46499 * 109.47540 * 65.00230 * 4 3 2 9 9 C 1.39853 * 119.99698 * 236.14837 * 8 4 3 10 10 C 1.39600 * 119.84045 * 7.75635 * 9 8 4 11 11 C 1.38057 * 120.54744 * 179.97438 * 10 9 8 12 12 C 1.38738 * 120.22377 * 359.77773 * 11 10 9 13 13 N 1.38860 * 120.16679 * 180.25735 * 12 11 10 14 14 C 1.41564 * 119.66973 * 0.49678 * 12 11 10 15 15 C 1.41027 * 120.26448 * 179.76324 * 14 12 11 16 16 H 1.07993 * 120.00246 * 328.06457 * 15 14 12 17 17 C 1.39891 * 119.99744 * 148.34161 * 15 14 12 18 18 N 1.30898 * 119.99971 * 166.43548 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 346.43863 * 17 15 14 20 20 H 1.48509 * 109.47033 * 88.71718 * 19 17 15 21 21 H 1.48497 * 109.47399 * 208.71432 * 19 17 15 22 22 H 1.48502 * 109.47380 * 328.71925 * 19 17 15 23 23 C 1.38005 * 119.83794 * 187.77114 * 9 8 4 24 24 H 1.08005 * 120.00061 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99791 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99791 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46886 * 4.99824 * 3 2 1 28 28 H 1.09005 * 109.46615 * 244.99639 * 3 2 1 29 29 H 1.08995 * 109.47039 * 296.89175 * 6 4 3 30 30 H 1.08998 * 109.46769 * 56.89028 * 6 4 3 31 31 H 1.09004 * 109.47268 * 65.24337 * 7 6 4 32 32 H 1.09007 * 109.47073 * 185.23517 * 7 6 4 33 33 H 1.08998 * 109.47682 * 305.23950 * 7 6 4 34 34 H 0.96994 * 120.00167 * 56.14585 * 8 4 3 35 35 H 1.07999 * 119.72555 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.88583 * 180.02562 * 11 10 9 37 37 H 0.96998 * 120.00208 * 180.24101 * 13 12 11 38 38 H 0.96998 * 120.00200 * 0.24006 * 13 12 11 39 39 H 0.97000 * 119.99848 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.11596 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4882 1.1469 2.1060 6 6 3.7092 2.7046 1.2552 7 6 4.6222 2.7589 2.4817 8 7 4.0546 0.2969 1.0002 9 6 4.2492 -0.6733 1.9885 10 6 3.3675 -0.7518 3.0680 11 6 3.5456 -1.7041 4.0516 12 6 4.6034 -2.5985 3.9744 13 7 4.7782 -3.5592 4.9616 14 6 5.5066 -2.5235 2.8869 15 6 6.5890 -3.4231 2.7987 16 1 7.0553 -3.7968 3.6982 17 6 7.0626 -3.8268 1.5458 18 7 8.2153 -4.4392 1.4480 19 14 6.0499 -3.4919 0.0123 20 1 6.4020 -2.1555 -0.5313 21 1 6.3370 -4.5323 -1.0076 22 1 4.6056 -3.5213 0.3565 23 6 5.3122 -1.5481 1.8921 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 4.3008 2.8674 0.3544 30 1 2.9474 3.4800 1.3347 31 1 5.4383 2.0467 2.3591 32 1 5.0301 3.7642 2.5868 33 1 4.0488 2.5044 3.3731 34 1 4.5947 0.2837 0.1946 35 1 2.5393 -0.0619 3.1342 36 1 2.8567 -1.7555 4.8818 37 1 5.5206 -4.1811 4.9071 38 1 4.1580 -3.6085 5.7057 39 1 8.5434 -4.7195 0.5793 40 1 5.9922 -1.4845 1.0554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393788096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:27 Heat of formation + Delta-G solvation = 31.535965 kcal Electronic energy + Delta-G solvation = -19676.997476 eV Core-core repulsion = 16877.147490 eV Total energy + Delta-G solvation = -2799.849985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.63462 -37.04861 -34.12625 -33.35918 -33.08677 -30.90389 -30.22050 -28.54840 -25.96354 -24.75333 -23.55703 -21.85826 -20.57396 -19.61657 -19.38814 -17.26272 -16.39886 -15.92666 -15.49031 -14.95175 -14.81874 -14.42496 -14.16516 -13.52330 -13.17455 -13.12210 -12.73257 -12.22001 -12.18226 -12.09727 -11.81711 -11.50734 -11.36204 -11.09697 -10.88486 -10.79721 -10.65366 -10.56548 -10.40657 -10.00056 -9.64760 -9.49939 -9.14460 -8.96972 -7.89435 -7.48265 -6.76305 -5.77337 -4.18662 2.46393 2.77655 3.04217 3.21222 3.38547 3.43787 4.12074 4.23994 4.71984 4.87472 5.20224 5.25470 5.30464 5.37487 5.45056 5.58329 5.62406 5.78935 5.86566 5.99139 6.06127 6.11924 6.17519 6.22861 6.33452 6.48759 6.60624 6.75730 6.83914 6.86639 6.94716 7.20470 7.32163 7.44611 7.55715 7.77078 8.00639 8.33170 8.48882 8.61527 8.71489 8.91969 9.09578 9.15912 10.27680 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017549 B = 0.006993 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.110297 B = 4003.125802 C = 4304.995862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.130 4.130 3 C -0.107 4.107 4 C 0.156 3.844 5 H 0.092 0.908 6 C -0.133 4.133 7 C -0.145 4.145 8 N -0.754 5.754 9 C 0.203 3.797 10 C -0.253 4.253 11 C -0.144 4.144 12 C 0.098 3.902 13 N -0.886 5.886 14 C 0.080 3.920 15 C -0.450 4.450 16 H 0.086 0.914 17 C 0.082 3.918 18 N -0.828 5.828 19 Si 0.923 3.077 20 H -0.275 1.275 21 H -0.302 1.302 22 H -0.249 1.249 23 C -0.276 4.276 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.386 0.614 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.393 0.607 38 H 0.376 0.624 39 H 0.280 0.720 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 9.427 -1.887 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.148 4.148 3 C -0.145 4.145 4 C 0.049 3.951 5 H 0.110 0.890 6 C -0.172 4.172 7 C -0.203 4.203 8 N -0.387 5.387 9 C 0.104 3.896 10 C -0.277 4.277 11 C -0.169 4.169 12 C -0.003 4.003 13 N -0.428 5.428 14 C 0.075 3.925 15 C -0.481 4.481 16 H 0.103 0.897 17 C -0.134 4.134 18 N -0.455 5.455 19 Si 0.752 3.248 20 H -0.202 1.202 21 H -0.230 1.230 22 H -0.172 1.172 23 C -0.301 4.301 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.219 0.781 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.222 0.778 38 H 0.201 0.799 39 H 0.091 0.909 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.628 9.419 -1.967 13.612 hybrid contribution -0.042 -0.191 -0.825 0.848 sum -9.670 9.228 -2.792 13.655 Atomic orbital electron populations 1.23726 0.95946 1.01214 1.04073 1.22979 0.95681 0.99045 0.97137 1.21224 0.98323 0.95379 0.99607 1.20836 0.88809 0.87239 0.98172 0.89042 1.21959 0.99144 0.97147 0.98987 1.21660 1.00296 1.00715 0.97590 1.44406 1.41784 1.30887 1.21590 1.17297 0.94043 0.89270 0.88991 1.19667 1.03158 1.05973 0.98895 1.19806 0.98935 0.98370 0.99744 1.17765 0.96172 0.93191 0.93220 1.41868 1.35047 1.39013 1.26876 1.17150 0.91910 0.92714 0.90763 1.19087 1.11530 1.23243 0.94192 0.89654 1.26046 0.94008 0.92548 1.00788 1.69703 1.16784 1.31769 1.27196 0.86192 0.82597 0.76560 0.79498 1.20206 1.22999 1.17215 1.20335 1.02399 1.02343 1.04979 0.88902 0.89156 0.87012 0.91345 0.91231 0.92374 0.92129 0.91803 0.93784 0.92833 0.78128 0.88939 0.89291 0.77849 0.79856 0.90949 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.62 14.32 29.02 0.42 -2.20 16 2 C -0.13 -1.81 9.25 -36.02 -0.33 -2.14 16 3 C -0.11 -1.31 5.34 -27.88 -0.15 -1.46 16 4 C 0.16 2.18 2.29 -67.93 -0.16 2.03 16 5 H 0.09 1.39 5.31 -51.93 -0.28 1.11 16 6 C -0.13 -1.64 5.62 -26.73 -0.15 -1.79 16 7 C -0.15 -1.98 9.72 37.16 0.36 -1.62 16 8 N -0.75 -12.91 4.25 -52.17 -0.22 -13.13 16 9 C 0.20 4.27 6.63 -83.78 -0.56 3.71 16 10 C -0.25 -5.22 9.30 -39.14 -0.36 -5.59 16 11 C -0.14 -3.06 9.86 -39.46 -0.39 -3.45 16 12 C 0.10 2.26 6.79 -83.23 -0.56 1.70 16 13 N -0.89 -17.62 8.98 32.75 0.29 -17.33 16 14 C 0.08 2.03 5.13 -106.66 -0.55 1.49 16 15 C -0.45 -12.14 8.90 -37.91 -0.34 -12.48 16 16 H 0.09 2.38 7.09 -52.49 -0.37 2.01 16 17 C 0.08 2.19 5.45 -17.33 -0.09 2.10 16 18 N -0.83 -22.65 13.93 55.55 0.77 -21.88 16 19 Si 0.92 21.78 24.47 -169.99 -4.16 17.62 16 20 H -0.28 -6.27 6.45 56.52 0.36 -5.91 16 21 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.25 -6.06 6.95 56.52 0.39 -5.67 16 23 C -0.28 -6.63 6.99 -38.75 -0.27 -6.90 16 24 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 25 H 0.09 0.96 7.84 -52.48 -0.41 0.55 16 26 H 0.11 1.82 8.03 -52.48 -0.42 1.40 16 27 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.39 6.44 8.84 -40.82 -0.36 6.08 16 35 H 0.09 1.73 5.75 -52.49 -0.30 1.43 16 36 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.39 7.94 7.16 -40.82 -0.29 7.65 16 38 H 0.38 6.24 8.83 -40.82 -0.36 5.88 16 39 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 40 H 0.10 2.46 4.41 -52.48 -0.23 2.23 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -27.80 321.73 -7.58 -35.38 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -5.98 Total: 21.10 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -3.13 Total: -26.61 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.85 Total: -52.34 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.16 Total: 17.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.80 -7.58 -35.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.915 kcal (2) G-P(sol) polarization free energy of solvation -27.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds