Wall clock time and date at job start Mon Mar 30 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00061 * 2 1 4 4 C 1.52998 * 109.46820 * 125.00079 * 3 2 1 5 5 H 1.08998 * 109.47106 * 304.99525 * 4 3 2 6 6 C 1.53008 * 109.46818 * 184.99833 * 4 3 2 7 7 C 1.52998 * 109.46907 * 176.88669 * 6 4 3 8 8 N 1.46499 * 109.47540 * 65.00230 * 4 3 2 9 9 C 1.39853 * 119.99698 * 236.14837 * 8 4 3 10 10 C 1.39600 * 119.84045 * 7.75635 * 9 8 4 11 11 C 1.38057 * 120.54744 * 179.97438 * 10 9 8 12 12 C 1.38738 * 120.22377 * 359.77773 * 11 10 9 13 13 N 1.38860 * 120.16679 * 180.25735 * 12 11 10 14 14 C 1.41564 * 119.66973 * 0.49678 * 12 11 10 15 15 C 1.41027 * 120.26448 * 179.76324 * 14 12 11 16 16 H 1.07993 * 120.00246 * 328.06457 * 15 14 12 17 17 C 1.39891 * 119.99744 * 148.34161 * 15 14 12 18 18 N 1.30898 * 119.99971 * 166.43548 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 346.43863 * 17 15 14 20 20 H 1.48509 * 109.47033 * 88.71718 * 19 17 15 21 21 H 1.48497 * 109.47399 * 208.71432 * 19 17 15 22 22 H 1.48502 * 109.47380 * 328.71925 * 19 17 15 23 23 C 1.38005 * 119.83794 * 187.77114 * 9 8 4 24 24 H 1.08005 * 120.00061 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99791 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99791 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46886 * 4.99824 * 3 2 1 28 28 H 1.09005 * 109.46615 * 244.99639 * 3 2 1 29 29 H 1.08995 * 109.47039 * 296.89175 * 6 4 3 30 30 H 1.08998 * 109.46769 * 56.89028 * 6 4 3 31 31 H 1.09004 * 109.47268 * 65.24337 * 7 6 4 32 32 H 1.09007 * 109.47073 * 185.23517 * 7 6 4 33 33 H 1.08998 * 109.47682 * 305.23950 * 7 6 4 34 34 H 0.96994 * 120.00167 * 56.14585 * 8 4 3 35 35 H 1.07999 * 119.72555 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.88583 * 180.02562 * 11 10 9 37 37 H 0.96998 * 120.00208 * 180.24101 * 13 12 11 38 38 H 0.96998 * 120.00200 * 0.24006 * 13 12 11 39 39 H 0.97000 * 119.99848 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.11596 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4882 1.1469 2.1060 6 6 3.7092 2.7046 1.2552 7 6 4.6222 2.7589 2.4817 8 7 4.0546 0.2969 1.0002 9 6 4.2492 -0.6733 1.9885 10 6 3.3675 -0.7518 3.0680 11 6 3.5456 -1.7041 4.0516 12 6 4.6034 -2.5985 3.9744 13 7 4.7782 -3.5592 4.9616 14 6 5.5066 -2.5235 2.8869 15 6 6.5890 -3.4231 2.7987 16 1 7.0553 -3.7968 3.6982 17 6 7.0626 -3.8268 1.5458 18 7 8.2153 -4.4392 1.4480 19 14 6.0499 -3.4919 0.0123 20 1 6.4020 -2.1555 -0.5313 21 1 6.3370 -4.5323 -1.0076 22 1 4.6056 -3.5213 0.3565 23 6 5.3122 -1.5481 1.8921 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 4.3008 2.8674 0.3544 30 1 2.9474 3.4800 1.3347 31 1 5.4383 2.0467 2.3591 32 1 5.0301 3.7642 2.5868 33 1 4.0488 2.5044 3.3731 34 1 4.5947 0.2837 0.1946 35 1 2.5393 -0.0619 3.1342 36 1 2.8567 -1.7555 4.8818 37 1 5.5206 -4.1811 4.9071 38 1 4.1580 -3.6085 5.7057 39 1 8.5434 -4.7195 0.5793 40 1 5.9922 -1.4845 1.0554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393788096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:27 Heat of formation + Delta-G solvation = 14.644020 kcal Electronic energy + Delta-G solvation = -19677.729965 eV Core-core repulsion = 16877.147490 eV Total energy + Delta-G solvation = -2800.582475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19737 -38.44283 -35.52016 -35.23161 -34.29968 -32.36376 -32.03885 -29.72510 -27.57689 -26.54099 -24.61836 -23.57169 -21.96143 -21.10192 -20.49311 -19.06890 -18.08502 -17.57505 -16.96056 -16.43923 -16.16642 -15.91509 -15.31443 -15.02704 -14.71898 -14.43546 -14.18436 -13.96120 -13.71040 -13.58271 -13.17161 -13.04462 -12.60755 -12.52338 -12.39695 -12.33615 -11.99688 -11.93751 -11.69180 -11.58711 -11.32210 -11.21385 -10.83488 -10.16549 -9.40125 -9.33662 -8.74805 -7.44715 -6.14795 0.93761 1.21891 1.28498 1.46957 1.52500 1.56580 2.19323 2.78973 2.90784 3.69152 3.72940 3.87038 4.16201 4.23163 4.36618 4.43953 4.46118 4.57088 4.75792 4.81007 4.87488 4.96138 5.02755 5.10278 5.10851 5.15270 5.22953 5.31308 5.43869 5.51342 5.52341 5.72340 5.81596 5.83985 5.96682 6.03387 6.23625 6.36373 6.69837 6.92945 7.00183 7.19059 7.33507 7.59147 8.34507 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017549 B = 0.006993 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.110297 B = 4003.125802 C = 4304.995862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.097 4.097 4 C 0.154 3.846 5 H 0.083 0.917 6 C -0.127 4.127 7 C -0.145 4.145 8 N -0.749 5.749 9 C 0.205 3.795 10 C -0.240 4.240 11 C -0.143 4.143 12 C 0.082 3.918 13 N -0.879 5.879 14 C 0.049 3.951 15 C -0.473 4.473 16 H 0.059 0.941 17 C 0.043 3.957 18 N -0.871 5.871 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.263 1.263 23 C -0.286 4.286 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.388 0.612 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.390 0.610 38 H 0.393 0.607 39 H 0.285 0.715 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.722 12.168 -2.415 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.173 4.173 3 C -0.136 4.136 4 C 0.048 3.952 5 H 0.101 0.899 6 C -0.165 4.165 7 C -0.202 4.202 8 N -0.380 5.380 9 C 0.103 3.897 10 C -0.264 4.264 11 C -0.168 4.168 12 C -0.021 4.021 13 N -0.422 5.422 14 C 0.043 3.957 15 C -0.504 4.504 16 H 0.077 0.923 17 C -0.168 4.168 18 N -0.500 5.500 19 Si 0.803 3.197 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.187 1.187 23 C -0.311 4.311 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.221 0.779 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.217 0.783 38 H 0.221 0.779 39 H 0.095 0.905 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.656 12.193 -2.491 17.749 hybrid contribution 0.678 -0.873 -0.555 1.237 sum -11.977 11.320 -3.046 16.759 Atomic orbital electron populations 1.23929 0.95440 1.02406 1.01560 1.22904 0.96308 0.98578 0.99555 1.21158 0.98179 0.95407 0.98810 1.21052 0.88338 0.87050 0.98719 0.89883 1.21916 0.99543 0.96626 0.98431 1.21644 0.99560 1.00855 0.98145 1.44515 1.42335 1.30601 1.20596 1.17331 0.93079 0.89342 0.89945 1.20070 1.03028 1.05410 0.97860 1.20197 0.98491 0.97495 1.00590 1.17969 0.96453 0.94345 0.93311 1.41786 1.35274 1.38260 1.26889 1.17320 0.92466 0.93293 0.92583 1.19082 1.12979 1.24810 0.93564 0.92331 1.26628 0.94718 0.92585 1.02837 1.69746 1.18127 1.34226 1.27950 0.85373 0.80269 0.76984 0.77091 1.19107 1.22222 1.18706 1.20416 1.03227 1.02993 1.04419 0.88921 0.86755 0.90228 0.88544 0.90708 0.91714 0.89185 0.94934 0.92035 0.93445 0.77923 0.86276 0.86334 0.78276 0.77871 0.90490 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.14 14.32 67.79 0.97 -3.17 16 2 C -0.16 -3.87 9.25 25.65 0.24 -3.63 16 3 C -0.10 -2.01 5.34 29.85 0.16 -1.85 16 4 C 0.15 3.78 2.29 44.99 0.10 3.88 16 5 H 0.08 2.20 5.31 -2.39 -0.01 2.18 16 6 C -0.13 -2.61 5.62 30.60 0.17 -2.43 16 7 C -0.14 -3.58 9.72 71.98 0.70 -2.88 16 8 N -0.75 -24.24 4.25 -318.97 -1.35 -25.60 16 9 C 0.20 8.35 6.63 38.13 0.25 8.60 16 10 C -0.24 -9.31 9.30 22.56 0.21 -9.10 16 11 C -0.14 -5.79 9.86 22.35 0.22 -5.57 16 12 C 0.08 3.76 6.79 38.97 0.26 4.02 16 13 N -0.88 -34.98 8.98 -50.31 -0.45 -35.43 16 14 C 0.05 2.53 5.13 -21.18 -0.11 2.42 16 15 C -0.47 -26.75 8.90 23.35 0.21 -26.54 16 16 H 0.06 3.50 7.09 -2.91 -0.02 3.48 16 17 C 0.04 2.40 5.45 85.23 0.46 2.86 16 18 N -0.87 -49.88 13.93 21.82 0.30 -49.57 16 19 Si 0.98 46.30 24.47 68.60 1.68 47.98 16 20 H -0.26 -11.91 6.45 99.48 0.64 -11.27 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.26 -12.88 6.95 99.48 0.69 -12.19 16 23 C -0.29 -13.81 6.99 22.81 0.16 -13.65 16 24 H 0.09 1.93 8.06 -2.91 -0.02 1.91 16 25 H 0.11 1.87 7.84 -2.91 -0.02 1.85 16 26 H 0.08 2.50 8.03 -2.91 -0.02 2.48 16 27 H 0.10 1.50 7.79 -2.39 -0.02 1.48 16 28 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 0.99 7.85 -2.39 -0.02 0.97 16 32 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.39 12.36 8.84 -92.71 -0.82 11.54 16 35 H 0.12 4.01 5.75 -2.91 -0.02 3.99 16 36 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.39 16.26 7.16 -92.71 -0.66 15.59 16 38 H 0.39 12.61 8.83 -92.71 -0.82 11.79 16 39 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 40 H 0.09 4.48 4.41 -2.91 -0.01 4.47 16 Total: -1.00 -62.14 321.73 2.87 -59.28 By element: Atomic # 1 Polarization: 51.71 SS G_CDS: -1.32 Total: 50.39 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 4.01 Total: -47.04 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -1.50 Total: -110.60 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.68 Total: 47.98 kcal Total: -62.14 2.87 -59.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.922 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds