Wall clock time and date at job start Mon Mar 30 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47193 * 2 1 4 4 C 1.52996 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47403 * 55.00435 * 4 3 2 6 6 C 1.52997 * 109.47267 * 294.99874 * 4 3 2 7 7 C 1.50703 * 109.46801 * 175.00049 * 4 3 2 8 8 O 1.20757 * 120.00080 * 29.99936 * 7 4 3 9 9 C 1.50704 * 119.99805 * 210.00201 * 7 4 3 10 10 H 1.08996 * 109.47321 * 34.99886 * 9 7 4 11 11 C 1.50697 * 109.46975 * 274.99637 * 9 7 4 12 12 H 1.07998 * 120.00055 * 325.13197 * 11 9 7 13 13 C 1.37881 * 119.99719 * 145.13146 * 11 9 7 14 14 N 1.31509 * 119.99672 * 184.97801 * 13 11 9 15 15 Si 1.86793 * 120.00091 * 4.98059 * 13 11 9 16 16 H 1.48500 * 109.47469 * 84.55622 * 15 13 11 17 17 H 1.48507 * 109.47246 * 204.55910 * 15 13 11 18 18 H 1.48499 * 109.47216 * 324.55520 * 15 13 11 19 19 C 1.50702 * 109.47046 * 155.00007 * 9 7 4 20 20 C 1.38238 * 120.00156 * 65.43983 * 19 9 7 21 21 C 1.38230 * 120.00242 * 179.78799 * 20 19 9 22 22 C 1.38241 * 119.99586 * 0.44425 * 21 20 19 23 23 C 1.38231 * 120.00445 * 359.81223 * 22 21 20 24 24 C 1.38235 * 120.00022 * 245.71930 * 19 9 7 25 25 H 1.08992 * 109.47472 * 300.00035 * 1 2 3 26 26 H 1.09005 * 109.46943 * 60.00389 * 1 2 3 27 27 H 1.09005 * 109.47205 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46943 * 119.99611 * 2 1 3 29 29 H 1.09001 * 109.47563 * 239.99749 * 2 1 3 30 30 H 1.09005 * 109.46859 * 299.99663 * 3 2 1 31 31 H 1.09001 * 109.47071 * 59.99448 * 3 2 1 32 32 H 1.08999 * 109.46884 * 300.00020 * 6 4 3 33 33 H 1.08992 * 109.46925 * 60.00500 * 6 4 3 34 34 H 1.09008 * 109.46669 * 180.02562 * 6 4 3 35 35 H 0.97006 * 120.00060 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99572 * 0.02562 * 20 19 9 37 37 H 1.07997 * 120.00436 * 180.28418 * 21 20 19 38 38 H 1.08002 * 119.99474 * 179.83344 * 22 21 20 39 39 H 1.07994 * 120.00416 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00029 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0794 0.8331 1.3083 7 6 4.0723 2.8580 -0.1232 8 8 3.4195 3.7714 0.3214 9 6 5.3894 3.1334 -0.8019 10 1 5.5300 2.4290 -1.6217 11 6 6.5099 2.9760 0.1934 12 1 6.3600 3.2599 1.2246 13 6 7.7264 2.4697 -0.2125 14 7 8.6716 2.2406 0.6727 15 14 8.0320 2.1094 -2.0197 16 1 8.4706 3.3517 -2.7049 17 1 9.0896 1.0745 -2.1462 18 1 6.7789 1.6154 -2.6448 19 6 5.3914 4.5401 -1.3424 20 6 5.3412 5.6144 -0.4738 21 6 5.3475 6.9048 -0.9693 22 6 5.3948 7.1209 -2.3339 23 6 5.4397 6.0467 -3.2027 24 6 5.4378 4.7563 -2.7069 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9564 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.7157 1.4227 2.1498 33 1 3.7161 -0.1906 1.3978 34 1 5.1695 0.8336 1.3088 35 1 9.5274 1.8840 0.3872 36 1 5.3009 5.4455 0.5922 37 1 5.3129 7.7442 -0.2906 38 1 5.3971 8.1291 -2.7212 39 1 5.4763 6.2155 -4.2688 40 1 5.4729 3.9170 -3.3857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394121560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:19 Heat of formation + Delta-G solvation = -42.121181 kcal Electronic energy + Delta-G solvation = -19709.399656 eV Core-core repulsion = 16874.062906 eV Total energy + Delta-G solvation = -2835.336750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.46218 -37.97341 -35.55323 -33.64639 -31.71148 -31.42099 -30.14596 -27.90228 -26.28263 -24.45371 -22.87007 -21.86780 -21.20312 -19.91548 -18.29118 -17.07347 -16.09240 -15.58399 -15.11062 -14.74859 -14.53339 -14.16656 -13.78224 -13.58203 -13.19983 -12.72833 -12.61749 -12.60070 -12.29504 -12.09410 -11.89816 -11.78909 -11.53273 -11.16466 -11.00305 -10.91950 -10.72798 -10.48033 -10.31866 -10.29267 -10.14450 -9.86455 -9.50010 -8.91148 -8.47628 -8.14010 -7.77496 -6.28905 -4.31347 2.12261 2.19654 2.93704 3.17905 3.24238 3.28162 4.23943 4.51074 4.80879 5.03231 5.09166 5.19855 5.32149 5.50597 5.53328 5.59495 5.71033 5.72758 5.81904 5.91917 5.97208 5.98651 6.04749 6.16920 6.23943 6.28066 6.33174 6.38086 6.44479 6.47495 6.53473 6.65106 6.79637 6.85556 6.90652 7.15237 7.24943 7.32740 7.59333 7.79595 8.24240 8.46911 8.74088 9.29291 10.81994 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014881 B = 0.008052 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.181958 B = 3476.694121 C = 4531.718690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.134 4.134 5 H 0.086 0.914 6 C -0.137 4.137 7 C 0.386 3.614 8 O -0.475 6.475 9 C -0.008 4.008 10 H 0.071 0.929 11 C -0.500 4.500 12 H 0.081 0.919 13 C 0.085 3.915 14 N -0.883 5.883 15 Si 0.866 3.134 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.261 1.261 19 C -0.043 4.043 20 C -0.072 4.072 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.139 4.139 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.269 0.731 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 -1.357 -4.452 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.153 4.153 5 H 0.105 0.895 6 C -0.194 4.194 7 C 0.262 3.738 8 O -0.350 6.350 9 C -0.027 4.027 10 H 0.088 0.912 11 C -0.537 4.537 12 H 0.099 0.901 13 C -0.119 4.119 14 N -0.519 5.519 15 Si 0.693 3.307 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.043 4.043 20 C -0.090 4.090 21 C -0.149 4.149 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.698 -0.949 -4.172 10.600 hybrid contribution 0.546 -0.224 -1.045 1.200 sum -9.152 -1.173 -5.217 10.600 Atomic orbital electron populations 1.21768 0.96280 1.01087 1.01707 1.21589 0.95376 0.97200 1.02129 1.21517 0.94126 0.96309 1.02490 1.21644 0.95748 0.97011 1.00928 0.89537 1.21704 1.03583 0.99309 0.94809 1.24733 0.85544 0.89196 0.74279 1.90255 1.57014 1.47842 1.39890 1.19032 0.94382 0.91190 0.98144 0.91161 1.20389 0.93956 1.43767 0.95554 0.90068 1.24958 0.95729 0.93986 0.97272 1.69859 1.05253 1.43025 1.33766 0.87007 0.78418 0.79046 0.86184 1.19292 1.21142 1.18589 1.20366 0.94551 0.97108 0.92290 1.20939 0.96532 0.91351 1.00163 1.21076 1.01773 0.96963 0.95098 1.20876 1.03616 0.97935 0.93723 1.20894 1.02302 0.92942 0.98684 1.21019 1.03043 0.96496 0.95207 0.92840 0.92970 0.93105 0.91621 0.92160 0.92378 0.91360 0.92974 0.92652 0.89888 0.92122 0.86121 0.87101 0.87337 0.87281 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.15 0.37 -1.23 16 2 C -0.13 -1.52 5.69 -26.73 -0.15 -1.67 16 3 C -0.11 -1.60 4.19 -26.73 -0.11 -1.71 16 4 C -0.13 -2.31 2.66 -91.77 -0.24 -2.55 16 5 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 6 C -0.14 -2.30 8.93 37.16 0.33 -1.97 16 7 C 0.39 8.06 5.30 -29.03 -0.15 7.91 16 8 O -0.48 -10.72 14.94 6.00 0.09 -10.63 16 9 C -0.01 -0.18 1.81 -94.07 -0.17 -0.35 16 10 H 0.07 1.55 4.85 -51.93 -0.25 1.30 16 11 C -0.50 -12.92 7.64 -34.44 -0.26 -13.18 16 12 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 13 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 14 N -0.88 -25.10 13.96 55.43 0.77 -24.33 16 15 Si 0.87 20.12 27.21 -169.99 -4.63 15.50 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.26 -5.59 6.07 56.52 0.34 -5.24 16 19 C -0.04 -0.94 4.35 -104.62 -0.46 -1.40 16 20 C -0.07 -1.57 8.01 -39.58 -0.32 -1.88 16 21 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 22 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 23 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 24 C -0.14 -2.81 9.49 -39.58 -0.38 -3.18 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.77 6.56 -51.93 -0.34 0.43 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.08 8.02 -51.93 -0.42 0.66 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 34 H 0.08 1.60 7.53 -51.92 -0.39 1.21 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.12 2.76 7.62 -52.49 -0.40 2.36 16 37 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 40 H 0.11 2.01 7.95 -52.49 -0.42 1.59 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -28.47 326.56 -8.07 -36.55 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.40 Total: 5.53 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -2.83 Total: -27.54 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.77 Total: -24.33 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.63 Total: 15.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.47 -8.07 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394121560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.576 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds