Wall clock time and date at job start Mon Mar 30 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47193 * 2 1 4 4 C 1.52996 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47403 * 55.00435 * 4 3 2 6 6 C 1.52997 * 109.47267 * 294.99874 * 4 3 2 7 7 C 1.50703 * 109.46801 * 175.00049 * 4 3 2 8 8 O 1.20757 * 120.00080 * 29.99936 * 7 4 3 9 9 C 1.50704 * 119.99805 * 210.00201 * 7 4 3 10 10 H 1.08996 * 109.47321 * 34.99886 * 9 7 4 11 11 C 1.50697 * 109.46975 * 274.99637 * 9 7 4 12 12 H 1.07998 * 120.00055 * 325.13197 * 11 9 7 13 13 C 1.37881 * 119.99719 * 145.13146 * 11 9 7 14 14 N 1.31509 * 119.99672 * 184.97801 * 13 11 9 15 15 Si 1.86793 * 120.00091 * 4.98059 * 13 11 9 16 16 H 1.48500 * 109.47469 * 84.55622 * 15 13 11 17 17 H 1.48507 * 109.47246 * 204.55910 * 15 13 11 18 18 H 1.48499 * 109.47216 * 324.55520 * 15 13 11 19 19 C 1.50702 * 109.47046 * 155.00007 * 9 7 4 20 20 C 1.38238 * 120.00156 * 65.43983 * 19 9 7 21 21 C 1.38230 * 120.00242 * 179.78799 * 20 19 9 22 22 C 1.38241 * 119.99586 * 0.44425 * 21 20 19 23 23 C 1.38231 * 120.00445 * 359.81223 * 22 21 20 24 24 C 1.38235 * 120.00022 * 245.71930 * 19 9 7 25 25 H 1.08992 * 109.47472 * 300.00035 * 1 2 3 26 26 H 1.09005 * 109.46943 * 60.00389 * 1 2 3 27 27 H 1.09005 * 109.47205 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46943 * 119.99611 * 2 1 3 29 29 H 1.09001 * 109.47563 * 239.99749 * 2 1 3 30 30 H 1.09005 * 109.46859 * 299.99663 * 3 2 1 31 31 H 1.09001 * 109.47071 * 59.99448 * 3 2 1 32 32 H 1.08999 * 109.46884 * 300.00020 * 6 4 3 33 33 H 1.08992 * 109.46925 * 60.00500 * 6 4 3 34 34 H 1.09008 * 109.46669 * 180.02562 * 6 4 3 35 35 H 0.97006 * 120.00060 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99572 * 0.02562 * 20 19 9 37 37 H 1.07997 * 120.00436 * 180.28418 * 21 20 19 38 38 H 1.08002 * 119.99474 * 179.83344 * 22 21 20 39 39 H 1.07994 * 120.00416 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00029 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0794 0.8331 1.3083 7 6 4.0723 2.8580 -0.1232 8 8 3.4195 3.7714 0.3214 9 6 5.3894 3.1334 -0.8019 10 1 5.5300 2.4290 -1.6217 11 6 6.5099 2.9760 0.1934 12 1 6.3600 3.2599 1.2246 13 6 7.7264 2.4697 -0.2125 14 7 8.6716 2.2406 0.6727 15 14 8.0320 2.1094 -2.0197 16 1 8.4706 3.3517 -2.7049 17 1 9.0896 1.0745 -2.1462 18 1 6.7789 1.6154 -2.6448 19 6 5.3914 4.5401 -1.3424 20 6 5.3412 5.6144 -0.4738 21 6 5.3475 6.9048 -0.9693 22 6 5.3948 7.1209 -2.3339 23 6 5.4397 6.0467 -3.2027 24 6 5.4378 4.7563 -2.7069 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9564 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.7157 1.4227 2.1498 33 1 3.7161 -0.1906 1.3978 34 1 5.1695 0.8336 1.3088 35 1 9.5274 1.8840 0.3872 36 1 5.3009 5.4455 0.5922 37 1 5.3129 7.7442 -0.2906 38 1 5.3971 8.1291 -2.7212 39 1 5.4763 6.2155 -4.2688 40 1 5.4729 3.9170 -3.3857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394121560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:18 Heat of formation + Delta-G solvation = -55.905115 kcal Electronic energy + Delta-G solvation = -19709.997373 eV Core-core repulsion = 16874.062906 eV Total energy + Delta-G solvation = -2835.934466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09184 -39.48669 -36.82736 -35.52028 -33.41550 -32.74100 -31.64710 -29.56062 -27.50866 -26.19839 -24.35547 -23.38719 -22.47475 -21.29318 -19.91115 -19.06636 -17.59365 -17.20562 -16.43570 -16.30570 -16.10647 -15.68213 -15.19900 -15.02214 -14.77786 -14.40275 -14.13470 -13.91404 -13.80657 -13.53701 -13.32763 -13.16406 -12.91961 -12.70796 -12.68007 -12.07662 -12.04933 -11.93180 -11.86140 -11.64188 -11.60366 -11.40959 -11.31863 -10.88677 -10.17415 -9.66290 -9.34169 -8.34802 -6.41228 0.60822 0.68060 1.22950 1.34512 1.39355 1.43333 2.30063 2.94039 3.07095 3.36488 3.89459 4.05145 4.10348 4.21471 4.23671 4.34983 4.38122 4.40714 4.46427 4.57489 4.63128 4.80258 4.83124 4.84033 4.90004 4.90067 5.01951 5.08170 5.16264 5.22376 5.27653 5.31230 5.36714 5.42791 5.49606 5.53434 5.67448 5.72279 5.93602 6.20041 6.29021 6.59246 6.83070 7.21849 8.79945 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014881 B = 0.008052 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.181958 B = 3476.694121 C = 4531.718690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.132 4.132 5 H 0.103 0.897 6 C -0.130 4.130 7 C 0.381 3.619 8 O -0.497 6.497 9 C -0.009 4.009 10 H 0.080 0.920 11 C -0.490 4.490 12 H 0.032 0.968 13 C 0.033 3.967 14 N -0.933 5.933 15 Si 0.922 3.078 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.228 1.228 19 C -0.072 4.072 20 C -0.103 4.103 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.153 4.153 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.270 0.730 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 -1.518 -7.548 13.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.151 4.151 5 H 0.121 0.879 6 C -0.187 4.187 7 C 0.259 3.741 8 O -0.373 6.373 9 C -0.029 4.029 10 H 0.098 0.902 11 C -0.528 4.528 12 H 0.050 0.950 13 C -0.167 4.167 14 N -0.571 5.571 15 Si 0.746 3.254 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.151 1.151 19 C -0.072 4.072 20 C -0.122 4.122 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.171 4.171 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.055 -1.113 -7.271 13.279 hybrid contribution 0.921 -0.039 -0.009 0.922 sum -10.134 -1.152 -7.279 12.530 Atomic orbital electron populations 1.21756 0.94996 1.02245 1.01711 1.21575 0.96492 0.94892 1.02923 1.21469 0.92047 0.98453 1.01763 1.21692 0.97551 0.94348 1.01508 0.87904 1.21636 1.01416 1.01257 0.94394 1.25078 0.84962 0.90834 0.73236 1.90235 1.57549 1.49056 1.40506 1.19009 0.93974 0.92352 0.97541 0.90228 1.20316 0.95438 1.42807 0.94210 0.94967 1.25729 0.95292 0.93950 1.01697 1.69999 1.05954 1.45063 1.36090 0.86105 0.79655 0.78826 0.80863 1.19479 1.20885 1.15102 1.20366 0.96725 0.96402 0.93715 1.20880 0.99215 0.93276 0.98806 1.21377 1.00968 0.96215 0.96807 1.21359 1.01303 1.00020 0.92691 1.21386 1.00109 0.91901 1.00887 1.21293 1.03085 0.98449 0.94245 0.93098 0.92801 0.91361 0.91121 0.91030 0.92536 0.92744 0.94013 0.89075 0.93081 0.92098 0.89330 0.84953 0.83231 0.83284 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.07 16 2 C -0.12 -2.64 5.69 30.59 0.17 -2.46 16 3 C -0.10 -2.87 4.19 30.60 0.13 -2.74 16 4 C -0.13 -4.49 2.66 -11.54 -0.03 -4.52 16 5 H 0.10 3.16 8.08 -2.39 -0.02 3.14 16 6 C -0.13 -4.41 8.93 71.98 0.64 -3.77 16 7 C 0.38 16.32 5.30 29.10 0.15 16.48 16 8 O -0.50 -23.37 14.94 -1.44 -0.02 -23.39 16 9 C -0.01 -0.43 1.81 -13.03 -0.02 -0.45 16 10 H 0.08 3.42 4.85 -2.39 -0.01 3.41 16 11 C -0.49 -26.68 7.64 25.60 0.20 -26.48 16 12 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 13 C 0.03 1.82 5.47 84.66 0.46 2.28 16 14 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 15 Si 0.92 41.09 27.21 68.60 1.87 42.96 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.23 -8.84 6.07 99.48 0.60 -8.23 16 19 C -0.07 -3.18 4.35 -19.86 -0.09 -3.27 16 20 C -0.10 -4.65 8.01 22.27 0.18 -4.47 16 21 C -0.14 -4.98 10.05 22.27 0.22 -4.76 16 22 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 23 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 24 C -0.15 -5.79 9.49 22.27 0.21 -5.58 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.07 1.47 6.56 -2.38 -0.02 1.45 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.05 1.70 8.02 -2.39 -0.02 1.69 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 2.42 6.56 -2.39 -0.02 2.40 16 34 H 0.05 2.05 7.53 -2.38 -0.02 2.04 16 35 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.09 4.41 7.62 -2.91 -0.02 4.39 16 37 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.12 4.21 7.95 -2.91 -0.02 4.18 16 Total: -1.00 -65.50 326.56 6.43 -59.07 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.89 Total: 26.08 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 3.39 Total: -49.61 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.30 Total: -55.11 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.02 Total: -23.39 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.87 Total: 42.96 kcal Total: -65.50 6.43 -59.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394121560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.163 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds