Wall clock time and date at job start Mon Mar 30 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.46879 * 2 1 4 4 C 1.53000 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46964 * 304.99710 * 4 3 2 6 6 C 1.53002 * 109.47561 * 64.99484 * 4 3 2 7 7 C 1.50703 * 109.47350 * 184.99950 * 4 3 2 8 8 O 1.20764 * 119.99367 * 334.99608 * 7 4 3 9 9 C 1.50690 * 120.00243 * 154.99887 * 7 4 3 10 10 H 1.09003 * 109.47163 * 326.43438 * 9 7 4 11 11 C 1.50704 * 109.47481 * 86.43847 * 9 7 4 12 12 H 1.07995 * 119.99788 * 57.40633 * 11 9 7 13 13 C 1.37879 * 120.00020 * 237.40801 * 11 9 7 14 14 N 1.31513 * 119.99854 * 174.80869 * 13 11 9 15 15 Si 1.86806 * 119.99769 * 354.81024 * 13 11 9 16 16 H 1.48501 * 109.47127 * 84.68417 * 15 13 11 17 17 H 1.48498 * 109.46715 * 204.68201 * 15 13 11 18 18 H 1.48498 * 109.46980 * 324.68149 * 15 13 11 19 19 C 1.50705 * 109.47348 * 206.43959 * 9 7 4 20 20 C 1.38238 * 119.99563 * 292.86663 * 19 9 7 21 21 C 1.38237 * 119.99808 * 180.02562 * 20 19 9 22 22 C 1.38240 * 119.99926 * 0.07240 * 21 20 19 23 23 C 1.38235 * 119.99863 * 359.97438 * 22 21 20 24 24 C 1.38227 * 120.00132 * 112.99812 * 19 9 7 25 25 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47705 * 300.00283 * 1 2 3 27 27 H 1.09000 * 109.47586 * 60.00521 * 1 2 3 28 28 H 1.08997 * 109.47705 * 239.99717 * 2 1 3 29 29 H 1.09000 * 109.47586 * 119.99478 * 2 1 3 30 30 H 1.08991 * 109.47460 * 59.99773 * 3 2 1 31 31 H 1.08999 * 109.46790 * 299.99582 * 3 2 1 32 32 H 1.09001 * 109.46797 * 60.00123 * 6 4 3 33 33 H 1.08996 * 109.47112 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.46685 * 300.00558 * 6 4 3 35 35 H 0.97003 * 119.99769 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.99955 * 0.10598 * 20 19 9 37 37 H 1.07993 * 120.00053 * 180.34418 * 21 20 19 38 38 H 1.07995 * 119.99498 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.99623 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.00139 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9336 0.8531 0.8410 6 6 4.0795 0.8332 -1.3082 7 6 4.0722 2.8581 0.1232 8 8 3.3796 3.7784 -0.2397 9 6 5.4387 3.1249 0.6996 10 1 5.6607 2.3829 1.4666 11 6 6.4710 3.0404 -0.3950 12 1 6.3888 3.6750 -1.2650 13 6 7.5205 2.1528 -0.2859 14 7 8.3636 2.0054 -1.2844 15 14 7.7447 1.1597 1.2804 16 1 6.8981 -0.0588 1.2193 17 1 9.1700 0.7659 1.4168 18 1 7.3444 1.9827 2.4498 19 6 5.4660 4.5023 1.3106 20 6 5.3591 5.6190 0.5026 21 6 5.3847 6.8824 1.0629 22 6 5.5187 7.0293 2.4310 23 6 5.6265 5.9127 3.2387 24 6 5.6007 4.6492 2.6784 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9563 -0.8900 32 1 3.7158 1.4227 -2.1498 33 1 5.1694 0.8328 -1.3084 34 1 3.7161 -0.1906 -1.3977 35 1 9.1021 1.3812 -1.2075 36 1 5.2544 5.5042 -0.5661 37 1 5.2957 7.7546 0.4324 38 1 5.5391 8.0164 2.8686 39 1 5.7316 6.0275 4.3074 40 1 5.6859 3.7769 3.3094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394121571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:25 Heat of formation + Delta-G solvation = -43.192859 kcal Electronic energy + Delta-G solvation = -19729.537588 eV Core-core repulsion = 16894.154367 eV Total energy + Delta-G solvation = -2835.383222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.43504 -37.96855 -35.52026 -33.67007 -31.68372 -31.46182 -30.16280 -27.92547 -26.23082 -24.42678 -22.89935 -21.87682 -21.18846 -19.89107 -18.27044 -17.11632 -16.12405 -15.54554 -15.08892 -14.75067 -14.53291 -14.15744 -13.74876 -13.60796 -13.16110 -12.83720 -12.65067 -12.56792 -12.24750 -12.05481 -11.84916 -11.76894 -11.51777 -11.15612 -11.06058 -10.89022 -10.69960 -10.50204 -10.30480 -10.25589 -10.10345 -9.95472 -9.46845 -8.96432 -8.50340 -8.16105 -7.78326 -6.31927 -4.33111 2.11387 2.17893 2.98053 3.13267 3.22951 3.23695 4.20027 4.49743 4.82542 5.04276 5.11131 5.21582 5.33631 5.52500 5.53145 5.58032 5.70624 5.74180 5.83358 5.93944 5.99007 5.99256 6.07269 6.16707 6.21814 6.27580 6.33873 6.39005 6.41894 6.48922 6.57728 6.67016 6.79148 6.84156 6.96970 7.14187 7.23225 7.29627 7.57417 7.77298 8.23678 8.50676 8.74339 9.25964 10.79078 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.008541 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.601015 B = 3277.686706 C = 4496.374995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.136 4.136 5 H 0.083 0.917 6 C -0.137 4.137 7 C 0.379 3.621 8 O -0.478 6.478 9 C 0.002 3.998 10 H 0.063 0.937 11 C -0.499 4.499 12 H 0.083 0.917 13 C 0.084 3.916 14 N -0.881 5.881 15 Si 0.865 3.135 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.261 1.261 19 C -0.038 4.038 20 C -0.076 4.076 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.269 0.731 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -1.335 5.442 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.143 4.143 4 C -0.156 4.156 5 H 0.102 0.898 6 C -0.194 4.194 7 C 0.256 3.744 8 O -0.352 6.352 9 C -0.018 4.018 10 H 0.081 0.919 11 C -0.536 4.536 12 H 0.101 0.899 13 C -0.121 4.121 14 N -0.516 5.516 15 Si 0.691 3.309 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.186 1.186 19 C -0.038 4.038 20 C -0.094 4.094 21 C -0.149 4.149 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.153 4.153 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.916 -0.957 5.164 10.348 hybrid contribution 0.488 -0.651 0.845 1.173 sum -8.428 -1.608 6.009 10.475 Atomic orbital electron populations 1.21764 0.96264 1.01059 1.01714 1.21595 0.95392 0.97284 1.02093 1.21497 0.94107 0.96179 1.02535 1.21677 0.95887 0.97204 1.00786 0.89843 1.21713 1.03652 0.99133 0.94871 1.25011 0.87093 0.89194 0.73132 1.90247 1.57546 1.47375 1.40076 1.18864 0.93737 0.91580 0.97586 0.91897 1.20486 1.06240 1.22758 1.04104 0.89889 1.25037 0.95282 0.95846 0.95958 1.69861 1.15470 1.35628 1.30653 0.87012 0.78130 0.80968 0.84782 1.19351 1.20992 1.18572 1.20186 0.94673 0.96585 0.92380 1.20956 0.96880 0.91362 1.00167 1.21068 1.01710 0.97218 0.94872 1.20882 1.03474 0.97750 0.94014 1.20904 1.02277 0.92854 0.98803 1.21027 1.02588 0.96849 0.94832 0.93132 0.92971 0.92821 0.91623 0.92243 0.92345 0.91345 0.92790 0.89880 0.92863 0.92049 0.86154 0.87100 0.87327 0.87248 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.15 0.37 -1.27 16 2 C -0.13 -1.59 5.69 -26.73 -0.15 -1.74 16 3 C -0.11 -1.63 4.13 -26.73 -0.11 -1.74 16 4 C -0.14 -2.43 2.65 -91.77 -0.24 -2.67 16 5 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 6 C -0.14 -2.42 8.89 37.16 0.33 -2.09 16 7 C 0.38 8.04 5.34 -29.04 -0.16 7.89 16 8 O -0.48 -10.91 15.00 6.00 0.09 -10.82 16 9 C 0.00 0.04 2.18 -94.08 -0.20 -0.16 16 10 H 0.06 1.38 4.49 -51.93 -0.23 1.15 16 11 C -0.50 -12.89 7.46 -34.44 -0.26 -13.15 16 12 H 0.08 2.39 7.65 -52.49 -0.40 1.99 16 13 C 0.08 2.19 5.41 -17.82 -0.10 2.10 16 14 N -0.88 -24.71 13.96 55.43 0.77 -23.94 16 15 Si 0.86 19.55 26.96 -169.99 -4.58 14.97 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.26 -5.71 6.77 56.52 0.38 -5.32 16 19 C -0.04 -0.83 4.58 -104.62 -0.48 -1.31 16 20 C -0.08 -1.63 8.04 -39.58 -0.32 -1.95 16 21 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 22 C -0.14 -2.44 10.05 -39.58 -0.40 -2.84 16 23 C -0.13 -2.28 10.05 -39.58 -0.40 -2.67 16 24 C -0.13 -2.67 9.67 -39.59 -0.38 -3.05 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.70 7.29 -51.93 -0.38 1.32 16 34 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.12 2.73 7.33 -52.49 -0.38 2.34 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.11 2.01 7.96 -52.49 -0.42 1.60 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -28.14 326.33 -7.99 -36.13 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.30 Total: 6.21 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -2.89 Total: -27.48 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.77 Total: -23.94 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.58 Total: 14.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.14 -7.99 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394121571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.058 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds