Wall clock time and date at job start Mon Mar 30 2020 06:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.46879 * 2 1 4 4 C 1.53000 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46964 * 304.99710 * 4 3 2 6 6 C 1.53002 * 109.47561 * 64.99484 * 4 3 2 7 7 C 1.50703 * 109.47350 * 184.99950 * 4 3 2 8 8 O 1.20764 * 119.99367 * 334.99608 * 7 4 3 9 9 C 1.50690 * 120.00243 * 154.99887 * 7 4 3 10 10 H 1.09003 * 109.47163 * 326.43438 * 9 7 4 11 11 C 1.50704 * 109.47481 * 86.43847 * 9 7 4 12 12 H 1.07995 * 119.99788 * 57.40633 * 11 9 7 13 13 C 1.37879 * 120.00020 * 237.40801 * 11 9 7 14 14 N 1.31513 * 119.99854 * 174.80869 * 13 11 9 15 15 Si 1.86806 * 119.99769 * 354.81024 * 13 11 9 16 16 H 1.48501 * 109.47127 * 84.68417 * 15 13 11 17 17 H 1.48498 * 109.46715 * 204.68201 * 15 13 11 18 18 H 1.48498 * 109.46980 * 324.68149 * 15 13 11 19 19 C 1.50705 * 109.47348 * 206.43959 * 9 7 4 20 20 C 1.38238 * 119.99563 * 292.86663 * 19 9 7 21 21 C 1.38237 * 119.99808 * 180.02562 * 20 19 9 22 22 C 1.38240 * 119.99926 * 0.07240 * 21 20 19 23 23 C 1.38235 * 119.99863 * 359.97438 * 22 21 20 24 24 C 1.38227 * 120.00132 * 112.99812 * 19 9 7 25 25 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47705 * 300.00283 * 1 2 3 27 27 H 1.09000 * 109.47586 * 60.00521 * 1 2 3 28 28 H 1.08997 * 109.47705 * 239.99717 * 2 1 3 29 29 H 1.09000 * 109.47586 * 119.99478 * 2 1 3 30 30 H 1.08991 * 109.47460 * 59.99773 * 3 2 1 31 31 H 1.08999 * 109.46790 * 299.99582 * 3 2 1 32 32 H 1.09001 * 109.46797 * 60.00123 * 6 4 3 33 33 H 1.08996 * 109.47112 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.46685 * 300.00558 * 6 4 3 35 35 H 0.97003 * 119.99769 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.99955 * 0.10598 * 20 19 9 37 37 H 1.07993 * 120.00053 * 180.34418 * 21 20 19 38 38 H 1.07995 * 119.99498 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.99623 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.00139 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9336 0.8531 0.8410 6 6 4.0795 0.8332 -1.3082 7 6 4.0722 2.8581 0.1232 8 8 3.3796 3.7784 -0.2397 9 6 5.4387 3.1249 0.6996 10 1 5.6607 2.3829 1.4666 11 6 6.4710 3.0404 -0.3950 12 1 6.3888 3.6750 -1.2650 13 6 7.5205 2.1528 -0.2859 14 7 8.3636 2.0054 -1.2844 15 14 7.7447 1.1597 1.2804 16 1 6.8981 -0.0588 1.2193 17 1 9.1700 0.7659 1.4168 18 1 7.3444 1.9827 2.4498 19 6 5.4660 4.5023 1.3106 20 6 5.3591 5.6190 0.5026 21 6 5.3847 6.8824 1.0629 22 6 5.5187 7.0293 2.4310 23 6 5.6265 5.9127 3.2387 24 6 5.6007 4.6492 2.6784 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9563 -0.8900 32 1 3.7158 1.4227 -2.1498 33 1 5.1694 0.8328 -1.3084 34 1 3.7161 -0.1906 -1.3977 35 1 9.1021 1.3812 -1.2075 36 1 5.2544 5.5042 -0.5661 37 1 5.2957 7.7546 0.4324 38 1 5.5391 8.0164 2.8686 39 1 5.7316 6.0275 4.3074 40 1 5.6859 3.7769 3.3094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394121571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:24 Heat of formation + Delta-G solvation = -56.803915 kcal Electronic energy + Delta-G solvation = -19730.127808 eV Core-core repulsion = 16894.154367 eV Total energy + Delta-G solvation = -2835.973441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07473 -39.47946 -36.82691 -35.53081 -33.42643 -32.75596 -31.64731 -29.57568 -27.49936 -26.17725 -24.38778 -23.38299 -22.45995 -21.28940 -19.90862 -19.08851 -17.62983 -17.16151 -16.41698 -16.30437 -16.12587 -15.67415 -15.16779 -15.03940 -14.78088 -14.45823 -14.14012 -13.92167 -13.74360 -13.51850 -13.31024 -13.15266 -12.90662 -12.72436 -12.63797 -12.08127 -12.06185 -11.90495 -11.86236 -11.67375 -11.63555 -11.41550 -11.31839 -10.86449 -10.22488 -9.66344 -9.33814 -8.34996 -6.41271 0.61638 0.68059 1.25926 1.35517 1.38642 1.47117 2.30381 2.92258 3.11886 3.36850 3.88177 4.04188 4.08596 4.21340 4.23577 4.35343 4.36948 4.40617 4.44172 4.53072 4.60309 4.80220 4.82468 4.84881 4.88690 4.89050 5.02272 5.07314 5.15591 5.21861 5.27461 5.31388 5.36205 5.41864 5.49030 5.52855 5.68193 5.72548 5.93605 6.20085 6.30647 6.59097 6.85010 7.21082 8.80085 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.008541 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.601015 B = 3277.686706 C = 4496.374995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.135 4.135 5 H 0.102 0.898 6 C -0.130 4.130 7 C 0.374 3.626 8 O -0.500 6.500 9 C 0.000 4.000 10 H 0.074 0.926 11 C -0.495 4.495 12 H 0.030 0.970 13 C 0.034 3.966 14 N -0.931 5.931 15 Si 0.921 3.079 16 H -0.242 1.242 17 H -0.287 1.287 18 H -0.244 1.244 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.147 4.147 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.271 0.729 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 -1.990 8.685 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.136 4.136 4 C -0.154 4.154 5 H 0.120 0.880 6 C -0.187 4.187 7 C 0.253 3.747 8 O -0.376 6.376 9 C -0.019 4.019 10 H 0.092 0.908 11 C -0.532 4.532 12 H 0.048 0.952 13 C -0.166 4.166 14 N -0.569 5.569 15 Si 0.744 3.256 16 H -0.166 1.166 17 H -0.213 1.213 18 H -0.168 1.168 19 C -0.071 4.071 20 C -0.125 4.125 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.165 4.165 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.089 -1.608 8.410 13.233 hybrid contribution 0.822 -0.283 -0.215 0.895 sum -9.268 -1.891 8.195 12.515 Atomic orbital electron populations 1.21751 0.94915 1.02254 1.01735 1.21581 0.96575 0.94931 1.02876 1.21450 0.92037 0.98360 1.01792 1.21725 0.97718 0.94633 1.01289 0.87993 1.21645 1.01478 1.01074 0.94544 1.25317 0.86586 0.90784 0.72019 1.90227 1.58079 1.48608 1.40713 1.18847 0.93518 0.92853 0.96716 0.90791 1.20383 1.07650 1.21665 1.03535 0.95150 1.25824 0.94633 0.96928 0.99229 1.70007 1.16553 1.37170 1.33140 0.86096 0.78271 0.80425 0.80835 1.16610 1.21312 1.16812 1.20241 0.96960 0.95967 0.93903 1.20880 0.99548 0.93284 0.98790 1.21364 1.00962 0.96522 0.96469 1.21366 1.01116 0.99788 0.92990 1.21388 1.00011 0.91756 1.00940 1.21290 1.02626 0.98844 0.93788 0.91339 0.92742 0.93113 0.91214 0.91028 0.92458 0.92818 0.94019 0.93077 0.89286 0.91973 0.89511 0.84981 0.83175 0.83177 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.91 71.98 0.71 -2.15 16 2 C -0.12 -2.75 5.69 30.59 0.17 -2.58 16 3 C -0.10 -2.93 4.13 30.60 0.13 -2.80 16 4 C -0.13 -4.71 2.65 -11.54 -0.03 -4.74 16 5 H 0.10 3.19 8.13 -2.39 -0.02 3.17 16 6 C -0.13 -4.63 8.89 71.98 0.64 -3.99 16 7 C 0.37 16.32 5.34 29.10 0.16 16.48 16 8 O -0.50 -23.86 15.00 -1.46 -0.02 -23.88 16 9 C 0.00 0.01 2.18 -13.03 -0.03 -0.02 16 10 H 0.07 3.18 4.49 -2.39 -0.01 3.17 16 11 C -0.50 -27.07 7.46 25.60 0.19 -26.88 16 12 H 0.03 1.92 7.65 -2.91 -0.02 1.90 16 13 C 0.03 1.84 5.41 84.66 0.46 2.30 16 14 N -0.93 -54.75 13.96 21.45 0.30 -54.45 16 15 Si 0.92 39.81 26.96 68.60 1.85 41.66 16 16 H -0.24 -9.44 7.11 99.48 0.71 -8.73 16 17 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.24 -9.83 6.77 99.48 0.67 -9.15 16 19 C -0.07 -3.14 4.58 -19.87 -0.09 -3.23 16 20 C -0.11 -4.79 8.04 22.27 0.18 -4.61 16 21 C -0.14 -4.92 10.05 22.27 0.22 -4.69 16 22 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 23 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 24 C -0.15 -5.55 9.67 22.27 0.22 -5.33 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.51 6.56 -2.39 -0.02 1.50 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.73 8.03 -2.39 -0.02 1.72 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 2.14 7.29 -2.39 -0.02 2.13 16 34 H 0.09 2.49 6.56 -2.39 -0.02 2.48 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.09 4.34 7.33 -2.91 -0.02 4.32 16 37 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.13 4.22 7.96 -2.91 -0.02 4.19 16 Total: -1.00 -65.40 326.33 6.47 -58.93 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.96 Total: 27.52 kcal Atomic # 6 Polarization: -53.15 SS G_CDS: 3.37 Total: -49.78 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.30 Total: -54.45 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.02 Total: -23.88 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.85 Total: 41.66 kcal Total: -65.40 6.47 -58.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394121571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.126 kcal (2) G-P(sol) polarization free energy of solvation -65.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds