Wall clock time and date at job start Mon Mar 30 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47152 * 2 1 4 4 C 1.52996 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47401 * 304.99976 * 4 3 2 6 6 C 1.52992 * 109.47287 * 65.00099 * 4 3 2 7 7 C 1.50707 * 109.46990 * 184.99984 * 4 3 2 8 8 O 1.20757 * 120.00144 * 335.00050 * 7 4 3 9 9 C 1.50703 * 119.99983 * 154.99960 * 7 4 3 10 10 H 1.09002 * 109.47174 * 34.99982 * 9 7 4 11 11 C 1.50701 * 109.47322 * 275.00445 * 9 7 4 12 12 H 1.08007 * 119.99546 * 324.98569 * 11 9 7 13 13 C 1.37868 * 120.00327 * 144.99383 * 11 9 7 14 14 N 1.31513 * 119.99994 * 6.61415 * 13 11 9 15 15 Si 1.86801 * 120.00020 * 186.61628 * 13 11 9 16 16 H 1.48500 * 109.47187 * 60.00022 * 15 13 11 17 17 H 1.48505 * 109.47344 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47372 * 299.99888 * 15 13 11 19 19 C 1.50696 * 109.46951 * 155.00038 * 9 7 4 20 20 C 1.38236 * 120.00025 * 246.59862 * 19 9 7 21 21 C 1.38236 * 120.00210 * 179.97438 * 20 19 9 22 22 C 1.38231 * 119.99879 * 0.02562 * 21 20 19 23 23 C 1.38237 * 120.00181 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99799 * 359.97117 * 23 22 21 25 25 H 1.08992 * 109.47437 * 59.99789 * 1 2 3 26 26 H 1.09005 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46888 * 299.99481 * 1 2 3 28 28 H 1.08998 * 109.47255 * 240.00301 * 2 1 3 29 29 H 1.09000 * 109.47535 * 119.99935 * 2 1 3 30 30 H 1.08998 * 109.46795 * 60.00019 * 3 2 1 31 31 H 1.08992 * 109.47122 * 300.00404 * 3 2 1 32 32 H 1.09001 * 109.47449 * 60.00249 * 6 4 3 33 33 H 1.09003 * 109.47241 * 179.97438 * 6 4 3 34 34 H 1.08993 * 109.47276 * 299.99964 * 6 4 3 35 35 H 0.97002 * 120.00398 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99906 * 0.25671 * 20 19 9 37 37 H 1.08000 * 119.99889 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.00229 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00491 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00094 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3082 7 6 4.0723 2.8580 0.1232 8 8 3.3798 3.7784 -0.2395 9 6 5.4389 3.1248 0.6997 10 1 6.1198 2.3261 0.4052 11 6 5.3482 3.1786 2.2030 12 1 4.4698 3.5918 2.6765 13 6 6.3866 2.7007 2.9738 14 7 7.5078 2.3184 2.4026 15 14 6.2008 2.5959 4.8296 16 1 5.0643 1.7003 5.1636 17 1 7.4493 2.0524 5.4223 18 1 5.9409 3.9510 5.3785 19 6 5.9549 4.4419 0.1800 20 6 7.0521 4.4713 -0.6604 21 6 7.5251 5.6794 -1.1375 22 6 6.9013 6.8581 -0.7738 23 6 5.8041 6.8287 0.0665 24 6 5.3304 5.6205 0.5428 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.7158 1.4227 -2.1498 33 1 5.1694 0.8336 -1.3089 34 1 3.7161 -0.1905 -1.3978 35 1 8.2385 1.9825 2.9449 36 1 7.5369 3.5500 -0.9478 37 1 8.3825 5.7023 -1.7938 38 1 7.2710 7.8020 -1.1463 39 1 5.3169 7.7497 0.3510 40 1 4.4735 5.5976 1.1997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394121573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:28 Heat of formation + Delta-G solvation = -46.662635 kcal Electronic energy + Delta-G solvation = -19613.777062 eV Core-core repulsion = 16778.243379 eV Total energy + Delta-G solvation = -2835.533682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.27020 -37.78139 -35.47261 -33.62269 -31.68679 -31.02455 -29.93033 -27.53927 -26.34577 -24.38686 -23.05667 -21.58786 -21.05177 -19.87499 -18.20749 -16.60778 -15.86870 -15.48308 -15.07304 -14.68338 -14.41945 -13.91684 -13.80045 -13.61731 -13.15511 -12.68379 -12.47329 -12.23303 -12.17663 -12.00218 -11.69264 -11.58357 -11.45886 -11.08070 -10.99747 -10.85273 -10.69331 -10.44178 -10.28146 -10.24092 -10.20781 -9.86298 -9.41764 -8.75225 -8.34058 -7.93920 -7.55141 -6.25472 -4.30712 2.36865 2.40506 3.05154 3.23264 3.27209 3.32139 4.28248 4.71061 4.96096 5.11127 5.16174 5.24057 5.40423 5.55625 5.70441 5.71637 5.79076 5.83355 5.92591 5.94298 6.05169 6.06329 6.16623 6.26987 6.30213 6.36953 6.38555 6.48402 6.59380 6.67725 6.73677 6.75150 6.87908 7.02666 7.19115 7.37093 7.46606 7.64177 7.79035 7.97629 8.11759 8.59726 8.78323 9.33400 10.83035 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013271 B = 0.008059 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.329743 B = 3473.480530 C = 4795.160803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.139 4.139 5 H 0.100 0.900 6 C -0.136 4.136 7 C 0.377 3.623 8 O -0.483 6.483 9 C 0.026 3.974 10 H 0.086 0.914 11 C -0.509 4.509 12 H 0.061 0.939 13 C 0.074 3.926 14 N -0.876 5.876 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.023 4.023 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.084 4.084 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 -2.353 -5.178 7.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.158 4.158 5 H 0.118 0.882 6 C -0.194 4.194 7 C 0.255 3.745 8 O -0.358 6.358 9 C 0.007 3.993 10 H 0.104 0.896 11 C -0.547 4.547 12 H 0.079 0.921 13 C -0.131 4.131 14 N -0.511 5.511 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.024 4.024 20 C -0.138 4.138 21 C -0.152 4.152 22 C -0.168 4.168 23 C -0.155 4.155 24 C -0.102 4.102 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.381 -1.956 -5.331 7.823 hybrid contribution 0.220 -0.073 1.193 1.216 sum -5.160 -2.029 -4.138 6.918 Atomic orbital electron populations 1.21767 0.96362 1.00996 1.01705 1.21594 0.95345 0.97377 1.01982 1.21457 0.94171 0.96049 1.02487 1.21673 0.96114 0.97807 1.00244 0.88206 1.21679 1.01611 1.00300 0.95787 1.25107 0.89651 0.89011 0.70765 1.90241 1.58635 1.47413 1.39551 1.18525 0.91259 0.92906 0.96644 0.89607 1.20545 1.03973 1.42413 0.87731 0.92103 1.24958 0.94795 0.94219 0.99119 1.69920 1.03618 1.41401 1.36184 0.86559 0.77652 0.78800 0.84591 1.19838 1.21019 1.19951 1.20295 0.93675 0.96653 0.91752 1.21013 0.97371 0.97179 0.98236 1.20907 0.99951 0.93057 1.01271 1.20804 0.97834 0.97224 1.00890 1.20988 0.97536 0.97511 0.99425 1.20907 0.99153 0.91669 0.98478 0.92965 0.93187 0.92862 0.91971 0.91977 0.91989 0.91803 0.92933 0.91934 0.92060 0.92339 0.87018 0.87596 0.87750 0.87613 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.13 -1.61 5.69 -26.73 -0.15 -1.76 16 3 C -0.10 -1.65 4.13 -26.73 -0.11 -1.76 16 4 C -0.14 -2.46 2.65 -91.77 -0.24 -2.70 16 5 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 6 C -0.14 -2.06 8.93 37.15 0.33 -1.73 16 7 C 0.38 8.13 5.35 -29.03 -0.16 7.97 16 8 O -0.48 -11.21 14.96 6.00 0.09 -11.12 16 9 C 0.03 0.61 2.29 -94.08 -0.22 0.40 16 10 H 0.09 2.13 7.16 -51.93 -0.37 1.76 16 11 C -0.51 -13.12 7.64 -34.44 -0.26 -13.38 16 12 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 13 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 14 N -0.88 -23.48 12.86 55.43 0.71 -22.76 16 15 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.02 -0.55 4.57 -104.63 -0.48 -1.02 16 20 C -0.12 -2.61 9.67 -39.58 -0.38 -2.99 16 21 C -0.13 -2.59 10.05 -39.58 -0.40 -2.98 16 22 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 23 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 24 C -0.08 -1.92 8.03 -39.58 -0.32 -2.23 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.11 2.33 7.96 -52.48 -0.42 1.91 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.11 2.66 7.65 -52.49 -0.40 2.26 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -27.87 332.49 -8.60 -36.47 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.49 Total: 5.16 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -2.91 Total: -28.02 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.71 Total: -22.76 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.87 -8.60 -36.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394121573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.194 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds