Wall clock time and date at job start Mon Mar 30 2020 06:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47152 * 2 1 4 4 C 1.52996 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47401 * 304.99976 * 4 3 2 6 6 C 1.52992 * 109.47287 * 65.00099 * 4 3 2 7 7 C 1.50707 * 109.46990 * 184.99984 * 4 3 2 8 8 O 1.20757 * 120.00144 * 335.00050 * 7 4 3 9 9 C 1.50703 * 119.99983 * 154.99960 * 7 4 3 10 10 H 1.09002 * 109.47174 * 34.99982 * 9 7 4 11 11 C 1.50701 * 109.47322 * 275.00445 * 9 7 4 12 12 H 1.08007 * 119.99546 * 324.98569 * 11 9 7 13 13 C 1.37868 * 120.00327 * 144.99383 * 11 9 7 14 14 N 1.31513 * 119.99994 * 6.61415 * 13 11 9 15 15 Si 1.86801 * 120.00020 * 186.61628 * 13 11 9 16 16 H 1.48500 * 109.47187 * 60.00022 * 15 13 11 17 17 H 1.48505 * 109.47344 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47372 * 299.99888 * 15 13 11 19 19 C 1.50696 * 109.46951 * 155.00038 * 9 7 4 20 20 C 1.38236 * 120.00025 * 246.59862 * 19 9 7 21 21 C 1.38236 * 120.00210 * 179.97438 * 20 19 9 22 22 C 1.38231 * 119.99879 * 0.02562 * 21 20 19 23 23 C 1.38237 * 120.00181 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99799 * 359.97117 * 23 22 21 25 25 H 1.08992 * 109.47437 * 59.99789 * 1 2 3 26 26 H 1.09005 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46888 * 299.99481 * 1 2 3 28 28 H 1.08998 * 109.47255 * 240.00301 * 2 1 3 29 29 H 1.09000 * 109.47535 * 119.99935 * 2 1 3 30 30 H 1.08998 * 109.46795 * 60.00019 * 3 2 1 31 31 H 1.08992 * 109.47122 * 300.00404 * 3 2 1 32 32 H 1.09001 * 109.47449 * 60.00249 * 6 4 3 33 33 H 1.09003 * 109.47241 * 179.97438 * 6 4 3 34 34 H 1.08993 * 109.47276 * 299.99964 * 6 4 3 35 35 H 0.97002 * 120.00398 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99906 * 0.25671 * 20 19 9 37 37 H 1.08000 * 119.99889 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.00229 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00491 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00094 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3082 7 6 4.0723 2.8580 0.1232 8 8 3.3798 3.7784 -0.2395 9 6 5.4389 3.1248 0.6997 10 1 6.1198 2.3261 0.4052 11 6 5.3482 3.1786 2.2030 12 1 4.4698 3.5918 2.6765 13 6 6.3866 2.7007 2.9738 14 7 7.5078 2.3184 2.4026 15 14 6.2008 2.5959 4.8296 16 1 5.0643 1.7003 5.1636 17 1 7.4493 2.0524 5.4223 18 1 5.9409 3.9510 5.3785 19 6 5.9549 4.4419 0.1800 20 6 7.0521 4.4713 -0.6604 21 6 7.5251 5.6794 -1.1375 22 6 6.9013 6.8581 -0.7738 23 6 5.8041 6.8287 0.0665 24 6 5.3304 5.6205 0.5428 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.7158 1.4227 -2.1498 33 1 5.1694 0.8336 -1.3089 34 1 3.7161 -0.1905 -1.3978 35 1 8.2385 1.9825 2.9449 36 1 7.5369 3.5500 -0.9478 37 1 8.3825 5.7023 -1.7938 38 1 7.2710 7.8020 -1.1463 39 1 5.3169 7.7497 0.3510 40 1 4.4735 5.5976 1.1997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394121573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:27 Heat of formation + Delta-G solvation = -58.655238 kcal Electronic energy + Delta-G solvation = -19614.297100 eV Core-core repulsion = 16778.243379 eV Total energy + Delta-G solvation = -2836.053721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96080 -39.38637 -36.80216 -35.51900 -33.09802 -32.63206 -31.55131 -29.28067 -27.53368 -26.20270 -24.50845 -23.22104 -22.41301 -21.32566 -19.88091 -18.55565 -17.49064 -17.12661 -16.42507 -16.39033 -15.96279 -15.48384 -15.44112 -15.00200 -14.60612 -14.17943 -13.98589 -13.82863 -13.62071 -13.33079 -13.23988 -13.12120 -12.87877 -12.78576 -12.70207 -12.20267 -12.03327 -11.95525 -11.84572 -11.62595 -11.60067 -11.38583 -11.30057 -10.70276 -10.07313 -9.57613 -9.22648 -8.24004 -6.35027 0.72715 0.78126 1.29624 1.40724 1.44536 1.50585 2.38514 3.03086 3.17611 3.46901 3.91570 4.04439 4.21205 4.27816 4.28317 4.38844 4.43273 4.48143 4.54341 4.62676 4.82366 4.84946 4.87300 4.94498 4.96822 5.02867 5.04638 5.11238 5.17797 5.24016 5.31791 5.39740 5.43193 5.48738 5.52103 5.61045 5.76365 5.81835 5.95555 6.24087 6.39557 6.68993 6.94150 7.30952 8.83865 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013271 B = 0.008059 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.329743 B = 3473.480530 C = 4795.160803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.136 4.136 5 H 0.092 0.908 6 C -0.131 4.131 7 C 0.375 3.625 8 O -0.504 6.504 9 C 0.024 3.976 10 H 0.068 0.932 11 C -0.520 4.520 12 H 0.046 0.954 13 C 0.034 3.966 14 N -0.901 5.901 15 Si 0.951 3.049 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.052 4.052 20 C -0.141 4.141 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.112 4.112 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.268 0.732 36 H 0.110 0.890 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 -2.306 -5.888 8.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.155 4.155 5 H 0.110 0.890 6 C -0.188 4.188 7 C 0.254 3.746 8 O -0.381 6.381 9 C 0.005 3.995 10 H 0.086 0.914 11 C -0.557 4.557 12 H 0.064 0.936 13 C -0.169 4.169 14 N -0.537 5.537 15 Si 0.776 3.224 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.052 4.052 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.130 4.130 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.400 -1.918 -6.043 8.328 hybrid contribution 0.246 0.001 1.357 1.379 sum -5.154 -1.916 -4.686 7.225 Atomic orbital electron populations 1.21757 0.95011 1.02262 1.01656 1.21569 0.96515 0.94925 1.02780 1.21418 0.92559 0.98243 1.01361 1.21662 0.97512 0.94875 1.01436 0.88994 1.21674 1.01124 1.01891 0.94089 1.25335 0.88672 0.90741 0.69833 1.90214 1.58804 1.48551 1.40512 1.18462 0.92263 0.92923 0.95856 0.91440 1.20658 1.03524 1.42400 0.89147 0.93564 1.25599 0.94464 0.93989 1.02814 1.70011 1.04098 1.42237 1.37401 0.85710 0.78018 0.78586 0.80059 1.18866 1.20311 1.20335 1.20375 0.94931 0.96578 0.93350 1.21170 0.97303 0.98549 0.98873 1.21327 1.00510 0.92201 1.00717 1.21282 0.96597 0.98788 0.99408 1.21341 0.97911 0.97377 0.98930 1.20896 0.99416 0.92990 0.99680 0.92631 0.91240 0.93392 0.90381 0.91916 0.93871 0.92206 0.92734 0.92727 0.88885 0.92286 0.87194 0.84084 0.83501 0.84841 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.91 71.98 0.71 -2.37 16 2 C -0.12 -2.89 5.69 30.59 0.17 -2.71 16 3 C -0.10 -3.10 4.13 30.59 0.13 -2.97 16 4 C -0.14 -4.87 2.65 -11.54 -0.03 -4.90 16 5 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 6 C -0.13 -3.86 8.93 71.98 0.64 -3.22 16 7 C 0.37 16.84 5.35 29.11 0.16 17.00 16 8 O -0.50 -24.34 14.96 -1.44 -0.02 -24.36 16 9 C 0.02 1.20 2.29 -13.03 -0.03 1.17 16 10 H 0.07 3.53 7.16 -2.39 -0.02 3.51 16 11 C -0.52 -27.89 7.64 25.60 0.20 -27.69 16 12 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 13 C 0.03 1.78 5.45 84.65 0.46 2.24 16 14 N -0.90 -49.39 12.86 21.44 0.28 -49.11 16 15 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 16 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 C -0.05 -2.51 4.57 -19.87 -0.09 -2.60 16 20 C -0.14 -6.18 9.67 22.27 0.22 -5.96 16 21 C -0.13 -4.75 10.05 22.27 0.22 -4.52 16 22 C -0.14 -4.94 10.05 22.27 0.22 -4.71 16 23 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 24 C -0.11 -5.22 8.03 22.27 0.18 -5.04 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.17 8.14 -2.38 -0.02 1.16 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.63 6.56 -2.39 -0.02 1.62 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.92 8.03 -2.39 -0.02 1.90 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.15 6.56 -2.39 -0.02 2.14 16 35 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.11 4.71 7.96 -2.91 -0.02 4.68 16 37 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 39 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.09 4.59 7.65 -2.91 -0.02 4.57 16 Total: -1.00 -61.60 332.49 6.65 -54.95 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.99 Total: 25.75 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 3.38 Total: -51.41 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.28 Total: -49.11 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.02 Total: -24.36 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -61.60 6.65 -54.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394121573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.704 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds