Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 112.90673 * 2 1 4 4 C 1.53778 * 113.61810 * 131.25098 * 2 1 3 5 5 C 1.53788 * 87.07970 * 89.11554 * 4 2 1 6 6 N 1.46503 * 113.60878 * 139.98135 * 5 4 2 7 7 C 1.39853 * 119.99696 * 155.00363 * 6 5 4 8 8 C 1.39607 * 119.83689 * 359.97438 * 7 6 5 9 9 C 1.38058 * 120.54720 * 179.97438 * 8 7 6 10 10 C 1.38736 * 120.22113 * 0.02562 * 9 8 7 11 11 N 1.38868 * 120.16237 * 179.97438 * 10 9 8 12 12 C 1.41557 * 119.67297 * 359.97438 * 10 9 8 13 13 C 1.41032 * 120.26889 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99234 * 25.46583 * 13 12 10 15 15 C 1.39881 * 120.00208 * 205.45984 * 13 12 10 16 16 N 1.30891 * 120.00349 * 15.15966 * 15 13 12 17 17 Si 1.86804 * 119.99717 * 195.16045 * 15 13 12 18 18 H 1.48496 * 109.47251 * 59.99937 * 17 15 13 19 19 H 1.48500 * 109.46906 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47207 * 299.99550 * 17 15 13 21 21 C 1.38003 * 119.84398 * 179.72511 * 7 6 5 22 22 C 1.53785 * 87.08034 * 25.43643 * 5 4 2 23 23 H 1.09002 * 109.47211 * 288.74792 * 1 2 3 24 24 H 1.09000 * 109.47475 * 48.74887 * 1 2 3 25 25 H 1.09004 * 109.46892 * 168.74903 * 1 2 3 26 26 H 1.09000 * 109.47569 * 191.25468 * 3 2 1 27 27 H 1.09005 * 109.47205 * 311.25450 * 3 2 1 28 28 H 1.09009 * 109.47093 * 71.25305 * 3 2 1 29 29 H 1.09004 * 113.61289 * 334.57090 * 4 2 1 30 30 H 1.08997 * 113.61645 * 203.66419 * 4 2 1 31 31 H 1.08998 * 113.61596 * 270.88665 * 5 4 2 32 32 H 0.97000 * 120.00324 * 335.00200 * 6 5 4 33 33 H 1.07997 * 119.72651 * 359.97438 * 8 7 6 34 34 H 1.08004 * 119.89187 * 180.02562 * 9 8 7 35 35 H 0.96999 * 120.00169 * 0.02562 * 11 10 9 36 36 H 0.97002 * 119.99956 * 179.97438 * 11 10 9 37 37 H 0.96996 * 120.00537 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.11087 * 359.97438 * 21 7 6 39 39 H 1.08997 * 113.61542 * 89.11235 * 22 5 4 40 40 H 1.08993 * 113.61054 * 220.02187 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 1.0593 5 6 2.0929 -2.0425 -0.0001 6 7 3.2741 -2.9092 -0.0001 7 6 3.1820 -4.2167 -0.4879 8 6 1.9627 -4.6926 -0.9735 9 6 1.8553 -5.9805 -1.4590 10 6 2.9615 -6.8177 -1.4686 11 7 2.8520 -8.1131 -1.9566 12 6 4.2025 -6.3448 -0.9784 13 6 5.3353 -7.1849 -0.9827 14 1 5.4032 -7.9960 -1.6926 15 6 6.3708 -6.9676 -0.0677 16 7 6.1750 -6.1958 0.9712 17 14 8.0331 -7.7789 -0.3285 18 1 8.6022 -7.3353 -1.6264 19 1 8.9508 -7.3922 0.7731 20 1 7.8675 -9.2546 -0.3390 21 6 4.2980 -5.0285 -0.4916 22 6 2.1460 -0.9290 -1.0595 23 1 -0.3634 0.3303 0.9731 24 1 -0.3634 0.6776 -0.7726 25 1 -0.3633 -1.0080 -0.2005 26 1 3.1953 1.3518 -0.2006 27 1 1.6427 2.0078 -0.7726 28 1 1.9626 1.8726 0.9732 29 1 1.4945 -1.1086 1.9145 30 1 3.1591 -0.6498 1.3489 31 1 1.1569 -2.6009 -0.0001 32 1 4.1200 -2.5763 0.3382 33 1 1.0963 -4.0478 -0.9695 34 1 0.9069 -6.3376 -1.8325 35 1 2.0006 -8.4346 -2.2923 36 1 3.6271 -8.6963 -1.9626 37 1 6.8931 -6.0448 1.6055 38 1 5.2406 -4.6555 -0.1192 39 1 3.1590 -0.6498 -1.3490 40 1 1.4945 -1.1086 -1.9146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395264105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = 32.378777 kcal Electronic energy + Delta-G solvation = -19232.456576 eV Core-core repulsion = 16432.643138 eV Total energy + Delta-G solvation = -2799.813438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62906 -37.64829 -34.58424 -33.43008 -31.64733 -29.44354 -29.22412 -27.43627 -25.98944 -25.50592 -24.69396 -21.94246 -20.69688 -19.52649 -18.11984 -17.08722 -16.05974 -15.57469 -15.20970 -14.83777 -14.66178 -14.43929 -14.11070 -13.21851 -12.90656 -12.74062 -12.51563 -12.32283 -12.04853 -11.85864 -11.75594 -11.54793 -11.43085 -11.21194 -11.02620 -10.98650 -10.65856 -10.33266 -10.18473 -9.95562 -9.68468 -9.58281 -9.27634 -9.03149 -7.69934 -7.19570 -6.58182 -5.49512 -4.04169 2.94312 3.13632 3.16599 3.33978 3.50585 4.05000 4.50852 4.58253 4.76924 4.83615 4.96244 5.25972 5.35480 5.44831 5.60656 5.61043 5.73846 5.84855 5.91795 5.95648 6.00121 6.01071 6.04425 6.19006 6.31177 6.39779 6.53692 6.62289 6.71692 7.15438 7.19804 7.35528 7.52504 7.75299 7.91712 8.04048 8.16494 8.49128 8.79758 8.94390 8.98031 9.03486 9.28943 9.37418 10.40209 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.004979 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.969425 B = 5621.749603 C = 6509.725892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.132 4.132 4 C -0.142 4.142 5 C 0.147 3.853 6 N -0.749 5.749 7 C 0.177 3.823 8 C -0.256 4.256 9 C -0.152 4.152 10 C 0.083 3.917 11 N -0.889 5.889 12 C 0.095 3.905 13 C -0.464 4.464 14 H 0.070 0.930 15 C 0.076 3.924 16 N -0.802 5.802 17 Si 0.902 3.098 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.201 4.201 22 C -0.149 4.149 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.387 0.613 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.374 0.626 36 H 0.388 0.612 37 H 0.275 0.725 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 9.214 -0.702 10.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C -0.189 4.189 4 C -0.180 4.180 5 C 0.040 3.960 6 N -0.381 5.381 7 C 0.078 3.922 8 C -0.280 4.280 9 C -0.177 4.177 10 C -0.018 4.018 11 N -0.432 5.432 12 C 0.090 3.910 13 C -0.495 4.495 14 H 0.088 0.912 15 C -0.139 4.139 16 N -0.428 5.428 17 Si 0.727 3.273 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.226 4.226 22 C -0.189 4.189 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.221 0.779 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.199 0.801 36 H 0.216 0.784 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.838 9.395 -0.470 11.071 hybrid contribution 1.044 -0.553 0.016 1.182 sum -4.794 8.842 -0.454 10.068 Atomic orbital electron populations 1.21591 0.93457 1.01999 1.01406 1.21642 0.95264 0.94244 0.98049 1.21693 1.00467 0.95576 1.01164 1.23489 1.00983 0.96427 0.97138 1.22023 0.91256 0.88630 0.94135 1.44347 1.09974 1.11436 1.72363 1.17556 0.94350 0.83892 0.96375 1.19630 0.95490 0.96938 1.15904 1.19703 0.95601 0.94528 1.07839 1.17857 0.93897 0.85576 1.04428 1.41805 1.12812 1.13212 1.75369 1.16966 0.90062 0.91689 0.92297 1.19107 1.01523 1.13426 1.15478 0.91193 1.25736 0.99834 0.94544 0.93815 1.69863 1.32894 1.31553 1.08532 0.86485 0.81928 0.80129 0.78721 1.19178 1.20624 1.19371 1.20538 0.96628 0.93387 1.12029 1.23719 1.00757 0.96958 0.97454 0.92640 0.92651 0.92234 0.92653 0.92938 0.92925 0.91601 0.90166 0.88387 0.77926 0.89690 0.89846 0.80145 0.78378 0.91439 0.86335 0.90237 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.07 37.16 0.34 -1.00 16 2 C -0.09 -1.07 1.39 -153.70 -0.21 -1.28 16 3 C -0.13 -1.35 9.19 37.16 0.34 -1.01 16 4 C -0.14 -1.87 6.98 -25.92 -0.18 -2.05 16 5 C 0.15 2.35 3.69 -67.11 -0.25 2.10 16 6 N -0.75 -14.60 5.54 -51.38 -0.28 -14.88 16 7 C 0.18 4.17 6.64 -83.77 -0.56 3.61 16 8 C -0.26 -5.89 9.26 -39.14 -0.36 -6.25 16 9 C -0.15 -3.55 9.86 -39.46 -0.39 -3.94 16 10 C 0.08 2.05 6.79 -83.23 -0.56 1.48 16 11 N -0.89 -18.49 8.98 32.75 0.29 -18.19 16 12 C 0.10 2.56 5.58 -106.66 -0.60 1.96 16 13 C -0.46 -12.33 8.50 -37.91 -0.32 -12.65 16 14 H 0.07 1.76 6.67 -52.48 -0.35 1.41 16 15 C 0.08 1.95 5.19 -17.34 -0.09 1.86 16 16 N -0.80 -21.17 10.88 55.54 0.60 -20.56 16 17 Si 0.90 19.11 29.59 -169.99 -5.03 14.09 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 22 C -0.15 -2.09 6.99 -25.91 -0.18 -2.27 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.65 7.34 -51.93 -0.38 0.27 16 26 H 0.05 0.58 7.94 -51.93 -0.41 0.16 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.10 1.64 5.63 -51.93 -0.29 1.35 16 32 H 0.39 7.28 8.73 -40.82 -0.36 6.92 16 33 H 0.09 1.77 6.02 -52.49 -0.32 1.46 16 34 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 36 H 0.39 7.91 7.04 -40.82 -0.29 7.63 16 37 H 0.27 6.70 8.30 -40.82 -0.34 6.37 16 38 H 0.12 3.24 6.14 -52.49 -0.32 2.91 16 39 H 0.08 1.15 7.96 -51.93 -0.41 0.74 16 40 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -28.12 319.45 -8.96 -37.08 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -6.00 Total: 22.73 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.36 Total: -25.07 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.61 Total: -53.64 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.12 -8.96 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395264105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.455 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds