Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 112.90673 * 2 1 4 4 C 1.53778 * 113.61810 * 131.25098 * 2 1 3 5 5 C 1.53788 * 87.07970 * 89.11554 * 4 2 1 6 6 N 1.46503 * 113.60878 * 139.98135 * 5 4 2 7 7 C 1.39853 * 119.99696 * 155.00363 * 6 5 4 8 8 C 1.39607 * 119.83689 * 359.97438 * 7 6 5 9 9 C 1.38058 * 120.54720 * 179.97438 * 8 7 6 10 10 C 1.38736 * 120.22113 * 0.02562 * 9 8 7 11 11 N 1.38868 * 120.16237 * 179.97438 * 10 9 8 12 12 C 1.41557 * 119.67297 * 359.97438 * 10 9 8 13 13 C 1.41032 * 120.26889 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99234 * 25.46583 * 13 12 10 15 15 C 1.39881 * 120.00208 * 205.45984 * 13 12 10 16 16 N 1.30891 * 120.00349 * 15.15966 * 15 13 12 17 17 Si 1.86804 * 119.99717 * 195.16045 * 15 13 12 18 18 H 1.48496 * 109.47251 * 59.99937 * 17 15 13 19 19 H 1.48500 * 109.46906 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47207 * 299.99550 * 17 15 13 21 21 C 1.38003 * 119.84398 * 179.72511 * 7 6 5 22 22 C 1.53785 * 87.08034 * 25.43643 * 5 4 2 23 23 H 1.09002 * 109.47211 * 288.74792 * 1 2 3 24 24 H 1.09000 * 109.47475 * 48.74887 * 1 2 3 25 25 H 1.09004 * 109.46892 * 168.74903 * 1 2 3 26 26 H 1.09000 * 109.47569 * 191.25468 * 3 2 1 27 27 H 1.09005 * 109.47205 * 311.25450 * 3 2 1 28 28 H 1.09009 * 109.47093 * 71.25305 * 3 2 1 29 29 H 1.09004 * 113.61289 * 334.57090 * 4 2 1 30 30 H 1.08997 * 113.61645 * 203.66419 * 4 2 1 31 31 H 1.08998 * 113.61596 * 270.88665 * 5 4 2 32 32 H 0.97000 * 120.00324 * 335.00200 * 6 5 4 33 33 H 1.07997 * 119.72651 * 359.97438 * 8 7 6 34 34 H 1.08004 * 119.89187 * 180.02562 * 9 8 7 35 35 H 0.96999 * 120.00169 * 0.02562 * 11 10 9 36 36 H 0.97002 * 119.99956 * 179.97438 * 11 10 9 37 37 H 0.96996 * 120.00537 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.11087 * 359.97438 * 21 7 6 39 39 H 1.08997 * 113.61542 * 89.11235 * 22 5 4 40 40 H 1.08993 * 113.61054 * 220.02187 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 1.0593 5 6 2.0929 -2.0425 -0.0001 6 7 3.2741 -2.9092 -0.0001 7 6 3.1820 -4.2167 -0.4879 8 6 1.9627 -4.6926 -0.9735 9 6 1.8553 -5.9805 -1.4590 10 6 2.9615 -6.8177 -1.4686 11 7 2.8520 -8.1131 -1.9566 12 6 4.2025 -6.3448 -0.9784 13 6 5.3353 -7.1849 -0.9827 14 1 5.4032 -7.9960 -1.6926 15 6 6.3708 -6.9676 -0.0677 16 7 6.1750 -6.1958 0.9712 17 14 8.0331 -7.7789 -0.3285 18 1 8.6022 -7.3353 -1.6264 19 1 8.9508 -7.3922 0.7731 20 1 7.8675 -9.2546 -0.3390 21 6 4.2980 -5.0285 -0.4916 22 6 2.1460 -0.9290 -1.0595 23 1 -0.3634 0.3303 0.9731 24 1 -0.3634 0.6776 -0.7726 25 1 -0.3633 -1.0080 -0.2005 26 1 3.1953 1.3518 -0.2006 27 1 1.6427 2.0078 -0.7726 28 1 1.9626 1.8726 0.9732 29 1 1.4945 -1.1086 1.9145 30 1 3.1591 -0.6498 1.3489 31 1 1.1569 -2.6009 -0.0001 32 1 4.1200 -2.5763 0.3382 33 1 1.0963 -4.0478 -0.9695 34 1 0.9069 -6.3376 -1.8325 35 1 2.0006 -8.4346 -2.2923 36 1 3.6271 -8.6963 -1.9626 37 1 6.8931 -6.0448 1.6055 38 1 5.2406 -4.6555 -0.1192 39 1 3.1590 -0.6498 -1.3490 40 1 1.4945 -1.1086 -1.9146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395264105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = 16.326033 kcal Electronic energy + Delta-G solvation = -19233.152675 eV Core-core repulsion = 16432.643138 eV Total energy + Delta-G solvation = -2800.509538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81440 -39.41262 -36.21196 -35.31659 -33.17608 -31.29702 -30.55091 -28.25894 -27.73902 -26.72152 -26.42472 -23.53002 -22.34013 -21.25423 -19.20055 -18.88360 -17.78156 -17.29226 -16.80293 -16.43036 -16.22622 -15.67804 -15.08890 -14.63138 -14.35419 -14.10858 -14.00003 -13.67381 -13.61392 -13.44976 -13.11528 -12.99552 -12.71644 -12.69905 -12.49206 -12.40806 -12.07110 -11.90178 -11.61013 -11.34411 -11.12410 -10.93416 -10.92753 -10.91106 -9.34576 -9.13300 -8.48454 -7.27452 -5.99836 1.13917 1.40942 1.50274 1.53538 1.66761 2.27440 2.91889 3.03596 3.58647 3.71153 3.78037 3.91500 3.94558 4.15239 4.38726 4.53478 4.61404 4.76263 4.80899 4.86862 4.91970 4.94579 5.01026 5.05629 5.20051 5.21023 5.24195 5.27402 5.37321 5.45821 5.53585 5.61224 5.71448 5.91985 6.08015 6.19024 6.31704 6.58461 6.98210 7.08548 7.16179 7.29506 7.49183 7.67935 8.51766 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.004979 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.969425 B = 5621.749603 C = 6509.725892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.077 4.077 3 C -0.130 4.130 4 C -0.136 4.136 5 C 0.132 3.868 6 N -0.747 5.747 7 C 0.174 3.826 8 C -0.260 4.260 9 C -0.157 4.157 10 C 0.067 3.933 11 N -0.879 5.879 12 C 0.061 3.939 13 C -0.493 4.493 14 H 0.074 0.926 15 C 0.033 3.967 16 N -0.834 5.834 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.228 4.228 22 C -0.147 4.147 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.388 0.612 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.390 0.610 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 10.066 -0.864 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.077 4.077 3 C -0.188 4.188 4 C -0.174 4.174 5 C 0.025 3.975 6 N -0.378 5.378 7 C 0.074 3.926 8 C -0.284 4.284 9 C -0.182 4.182 10 C -0.035 4.035 11 N -0.423 5.423 12 C 0.055 3.945 13 C -0.524 4.524 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.462 5.462 17 Si 0.797 3.203 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.185 1.185 21 C -0.253 4.253 22 C -0.186 4.186 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.221 0.779 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.218 0.782 36 H 0.218 0.782 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.689 10.263 -0.639 12.267 hybrid contribution 1.191 -0.756 0.065 1.412 sum -5.498 9.507 -0.574 10.998 Atomic orbital electron populations 1.21616 0.92209 1.01998 1.02667 1.21596 0.96113 0.94510 0.95510 1.21684 1.00180 0.94577 1.02313 1.23459 1.01458 0.95378 0.97114 1.22326 0.89512 0.88796 0.96823 1.44460 1.11268 1.10486 1.71635 1.17670 0.93878 0.85236 0.95844 1.19947 0.95905 0.97348 1.15153 1.20055 0.96351 0.94496 1.07261 1.18033 0.93637 0.87126 1.04697 1.41673 1.13791 1.11997 1.74872 1.17364 0.91385 0.92272 0.93440 1.19386 1.02625 1.14135 1.16301 0.90801 1.26566 1.03204 0.95045 0.93131 1.69955 1.34082 1.32867 1.09313 0.85370 0.77059 0.79318 0.78559 1.19016 1.19944 1.18472 1.20514 0.96834 0.94219 1.13720 1.23657 1.00696 0.96761 0.97516 0.91361 0.91353 0.93011 0.93109 0.91777 0.91725 0.90913 0.90106 0.89071 0.77910 0.87493 0.87154 0.78221 0.78245 0.91090 0.88378 0.90927 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.07 71.98 0.65 -1.68 16 2 C -0.08 -1.63 1.39 -51.66 -0.07 -1.70 16 3 C -0.13 -2.33 9.19 71.98 0.66 -1.67 16 4 C -0.14 -3.38 6.98 31.12 0.22 -3.16 16 5 C 0.13 4.10 3.69 45.52 0.17 4.27 16 6 N -0.75 -29.41 5.54 -316.46 -1.75 -31.16 16 7 C 0.17 8.34 6.64 38.14 0.25 8.60 16 8 C -0.26 -11.82 9.26 22.56 0.21 -11.62 16 9 C -0.16 -7.20 9.86 22.35 0.22 -6.97 16 10 C 0.07 3.31 6.79 38.97 0.26 3.57 16 11 N -0.88 -36.11 8.98 -50.31 -0.45 -36.56 16 12 C 0.06 3.34 5.58 -21.18 -0.12 3.23 16 13 C -0.49 -26.84 8.50 23.35 0.20 -26.64 16 14 H 0.07 3.79 6.67 -2.91 -0.02 3.77 16 15 C 0.03 1.72 5.19 85.23 0.44 2.16 16 16 N -0.83 -45.40 10.88 21.82 0.24 -45.16 16 17 Si 0.97 39.68 29.59 68.60 2.03 41.71 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 C -0.23 -12.44 8.50 22.81 0.19 -12.25 16 22 C -0.15 -3.94 6.99 31.12 0.22 -3.72 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 1.03 7.34 -2.39 -0.02 1.01 16 26 H 0.05 0.96 7.94 -2.39 -0.02 0.94 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 30 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 31 H 0.09 2.96 5.63 -2.39 -0.01 2.95 16 32 H 0.39 14.95 8.73 -92.71 -0.81 14.14 16 33 H 0.11 4.31 6.02 -2.91 -0.02 4.29 16 34 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.39 13.21 8.83 -92.71 -0.82 12.39 16 36 H 0.39 15.82 7.04 -92.71 -0.65 15.17 16 37 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 38 H 0.10 5.64 6.14 -2.91 -0.02 5.62 16 39 H 0.07 2.05 7.96 -2.39 -0.02 2.03 16 40 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -61.24 319.45 2.36 -58.88 By element: Atomic # 1 Polarization: 61.08 SS G_CDS: -1.21 Total: 59.86 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 3.51 Total: -47.58 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -1.97 Total: -112.88 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -61.24 2.36 -58.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395264105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.210 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds