Wall clock time and date at job start Mon Mar 30 2020 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48495 * 109.47168 * 270.00099 * 3 2 1 5 5 H 1.48503 * 109.47004 * 29.99887 * 3 2 1 6 6 H 1.48498 * 109.47023 * 149.99418 * 3 2 1 7 7 C 1.37876 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00389 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99600 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47223 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47186 * 179.97438 * 12 11 10 14 14 C 1.48051 * 110.99942 * 69.87288 * 13 12 11 15 15 C 1.51207 * 105.68063 * 91.73016 * 14 13 12 16 16 C 1.38259 * 131.68348 * 197.48348 * 15 14 13 17 17 C 1.38078 * 120.12820 * 180.29840 * 16 15 14 18 18 C 1.38939 * 119.92565 * 359.45860 * 17 16 15 19 19 N 1.39667 * 120.08117 * 180.24969 * 18 17 16 20 20 C 1.38891 * 119.84163 * 0.55135 * 18 17 16 21 21 C 1.38064 * 119.97398 * 359.72087 * 20 18 17 22 22 C 1.48044 * 110.99958 * 184.88782 * 13 12 11 23 23 H 0.96999 * 120.00193 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47380 * 60.00166 * 9 7 2 25 25 H 1.08999 * 109.47513 * 300.00133 * 9 7 2 26 26 H 1.09003 * 109.47023 * 59.99774 * 10 9 7 27 27 H 1.09008 * 109.47101 * 300.00141 * 10 9 7 28 28 H 1.08994 * 109.47591 * 60.00022 * 11 10 9 29 29 H 1.08999 * 109.47221 * 299.99931 * 11 10 9 30 30 H 1.08994 * 109.47019 * 59.99427 * 12 11 10 31 31 H 1.09009 * 109.46511 * 299.99485 * 12 11 10 32 32 H 1.08997 * 110.20944 * 332.67332 * 14 13 12 33 33 H 1.09000 * 110.20341 * 210.78287 * 14 13 12 34 34 H 1.08002 * 119.93352 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.03698 * 179.74085 * 17 16 15 36 36 H 0.96998 * 120.00305 * 180.30946 * 19 18 17 37 37 H 0.97004 * 119.99337 * 0.29522 * 19 18 17 38 38 H 1.07997 * 120.01691 * 179.74613 * 20 18 17 39 39 H 1.08990 * 110.20936 * 27.31841 * 22 13 12 40 40 H 1.08998 * 110.20769 * 149.22137 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0015 13 7 7.5306 -4.0789 0.0020 14 6 8.0606 -3.6041 1.3003 15 6 8.2478 -4.8451 2.1437 16 6 8.4041 -5.0154 3.5069 17 6 8.5664 -6.2817 4.0330 18 6 8.5613 -7.3876 3.1920 19 7 8.7199 -8.6703 3.7213 20 6 8.4043 -7.2140 1.8229 21 6 8.2481 -5.9451 1.3019 22 6 8.0612 -5.4559 -0.1165 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8908 28 1 5.9142 -2.1229 0.8926 29 1 5.9156 -2.1222 -0.8873 30 1 5.6990 -4.5920 -0.8891 31 1 5.6976 -4.5934 0.8909 32 1 7.3470 -2.9306 1.7747 33 1 9.0160 -3.0999 1.1552 34 1 8.4037 -4.1559 4.1609 35 1 8.6925 -6.4126 5.0976 36 1 8.7207 -9.4412 3.1327 37 1 8.8295 -8.7901 4.6777 38 1 8.4041 -8.0714 1.1662 39 1 7.3480 -6.0902 -0.6425 40 1 9.0168 -5.4473 -0.6407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395409188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:14 Heat of formation + Delta-G solvation = 20.929950 kcal Electronic energy + Delta-G solvation = -18565.485213 eV Core-core repulsion = 15765.175317 eV Total energy + Delta-G solvation = -2800.309897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59265 -37.82097 -35.08310 -33.82075 -32.34742 -31.28908 -29.87296 -28.35368 -26.98623 -25.16272 -22.98335 -21.83789 -21.15516 -20.42202 -19.93468 -17.18402 -16.91334 -16.61354 -15.85342 -15.58420 -15.25172 -14.43145 -14.15340 -13.90140 -13.65426 -13.64989 -13.22450 -12.86569 -12.65166 -12.23268 -12.11896 -11.67186 -11.63288 -11.58727 -11.12817 -10.94627 -10.72620 -10.44701 -10.34156 -9.82962 -9.60659 -9.44041 -9.09975 -8.91358 -8.62209 -8.47846 -7.63459 -5.98692 -3.96031 1.25165 1.42457 3.35699 3.42491 3.47449 3.54493 3.67214 3.99022 4.37782 4.50972 4.69726 4.85772 5.11451 5.18555 5.25886 5.35542 5.39744 5.45721 5.52084 5.65811 5.75777 5.83444 5.87344 5.90336 6.06716 6.09668 6.18506 6.24905 6.38556 6.53048 6.66659 6.71939 6.82751 6.87574 6.96269 7.13346 7.23353 7.40604 7.46152 7.53435 7.86898 8.61025 9.06853 9.64484 11.15022 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032660 B = 0.003364 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.122659 B = 8320.398276 C = 8437.253034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.115 4.115 12 C 0.043 3.957 13 N -0.502 5.502 14 C 0.079 3.921 15 C -0.178 4.178 16 C -0.050 4.050 17 C -0.198 4.198 18 C 0.214 3.786 19 N -0.880 5.880 20 C -0.178 4.178 21 C -0.076 4.076 22 C 0.075 3.925 23 H 0.262 0.738 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.397 0.603 37 H 0.397 0.603 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.271 -15.472 5.972 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.153 4.153 12 C -0.085 4.085 13 N -0.222 5.222 14 C -0.049 4.049 15 C -0.181 4.181 16 C -0.070 4.070 17 C -0.221 4.221 18 C 0.110 3.890 19 N -0.419 5.419 20 C -0.202 4.202 21 C -0.079 4.079 22 C -0.053 4.053 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.225 0.775 37 H 0.225 0.775 38 H 0.136 0.864 39 H 0.098 0.902 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.248 -14.943 5.466 26.546 hybrid contribution 0.049 -0.094 0.942 0.948 sum 21.298 -15.038 6.408 26.847 Atomic orbital electron populations 1.69924 1.06327 1.26797 1.51559 1.25052 0.94734 0.99223 0.94661 0.86755 0.80365 0.83541 0.78500 1.20304 1.21500 1.18962 1.21201 0.89739 0.94383 1.50364 0.91153 1.19566 0.96891 0.92495 0.96144 1.21421 0.91847 0.99761 1.00910 1.21688 0.97306 0.94314 1.01998 1.22457 0.86114 0.98953 1.00962 1.65214 1.09489 1.17390 1.30131 1.21719 1.01215 0.94538 0.87446 1.20981 1.06496 0.96612 0.94010 1.20239 0.96635 0.96549 0.93534 1.20477 1.11098 0.91564 0.98946 1.17630 0.93709 0.85569 0.92136 1.42412 1.84294 1.04801 1.10435 1.19818 1.10940 0.96463 0.92938 1.20942 0.96887 0.93018 0.97006 1.21791 1.01414 0.89744 0.92368 0.92834 0.96777 0.97060 0.92854 0.93093 0.92555 0.91606 0.90679 0.94457 0.89827 0.89218 0.86073 0.86162 0.77537 0.77473 0.86440 0.90228 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -15.27 9.66 -34.44 -0.33 -15.61 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.12 -1.93 5.25 -26.73 -0.14 -2.07 16 12 C 0.04 0.62 4.63 -3.82 -0.02 0.61 16 13 N -0.50 -6.62 5.50 -234.90 -1.29 -7.92 16 14 C 0.08 0.98 6.41 -4.09 -0.03 0.95 16 15 C -0.18 -2.19 6.12 -104.27 -0.64 -2.82 16 16 C -0.05 -0.56 10.03 -39.63 -0.40 -0.96 16 17 C -0.20 -2.02 9.90 -39.38 -0.39 -2.41 16 18 C 0.21 2.11 6.75 -83.79 -0.57 1.55 16 19 N -0.88 -5.80 9.09 32.41 0.29 -5.51 16 20 C -0.18 -1.90 9.89 -39.40 -0.39 -2.29 16 21 C -0.08 -0.91 6.20 -104.34 -0.65 -1.55 16 22 C 0.07 0.85 6.65 -4.10 -0.03 0.82 16 23 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 28 H 0.06 0.93 6.53 -51.93 -0.34 0.59 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.05 7.97 -51.93 -0.41 0.64 16 31 H 0.04 0.57 8.00 -51.92 -0.42 0.15 16 32 H 0.08 1.09 6.17 -51.93 -0.32 0.77 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.40 1.96 8.84 -40.82 -0.36 1.60 16 37 H 0.40 1.92 8.84 -40.82 -0.36 1.56 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -32.71 322.91 -10.29 -43.00 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.34 Total: 0.40 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.92 Total: -24.61 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.22 Total: -41.30 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.71 -10.29 -43.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395409188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.930 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds