Wall clock time and date at job start Mon Mar 30 2020 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48495 * 109.47168 * 270.00099 * 3 2 1 5 5 H 1.48503 * 109.47004 * 29.99887 * 3 2 1 6 6 H 1.48498 * 109.47023 * 149.99418 * 3 2 1 7 7 C 1.37876 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00389 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99600 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47223 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47186 * 179.97438 * 12 11 10 14 14 C 1.48051 * 110.99942 * 69.87288 * 13 12 11 15 15 C 1.51207 * 105.68063 * 91.73016 * 14 13 12 16 16 C 1.38259 * 131.68348 * 197.48348 * 15 14 13 17 17 C 1.38078 * 120.12820 * 180.29840 * 16 15 14 18 18 C 1.38939 * 119.92565 * 359.45860 * 17 16 15 19 19 N 1.39667 * 120.08117 * 180.24969 * 18 17 16 20 20 C 1.38891 * 119.84163 * 0.55135 * 18 17 16 21 21 C 1.38064 * 119.97398 * 359.72087 * 20 18 17 22 22 C 1.48044 * 110.99958 * 184.88782 * 13 12 11 23 23 H 0.96999 * 120.00193 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47380 * 60.00166 * 9 7 2 25 25 H 1.08999 * 109.47513 * 300.00133 * 9 7 2 26 26 H 1.09003 * 109.47023 * 59.99774 * 10 9 7 27 27 H 1.09008 * 109.47101 * 300.00141 * 10 9 7 28 28 H 1.08994 * 109.47591 * 60.00022 * 11 10 9 29 29 H 1.08999 * 109.47221 * 299.99931 * 11 10 9 30 30 H 1.08994 * 109.47019 * 59.99427 * 12 11 10 31 31 H 1.09009 * 109.46511 * 299.99485 * 12 11 10 32 32 H 1.08997 * 110.20944 * 332.67332 * 14 13 12 33 33 H 1.09000 * 110.20341 * 210.78287 * 14 13 12 34 34 H 1.08002 * 119.93352 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.03698 * 179.74085 * 17 16 15 36 36 H 0.96998 * 120.00305 * 180.30946 * 19 18 17 37 37 H 0.97004 * 119.99337 * 0.29522 * 19 18 17 38 38 H 1.07997 * 120.01691 * 179.74613 * 20 18 17 39 39 H 1.08990 * 110.20936 * 27.31841 * 22 13 12 40 40 H 1.08998 * 110.20769 * 149.22137 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0015 13 7 7.5306 -4.0789 0.0020 14 6 8.0606 -3.6041 1.3003 15 6 8.2478 -4.8451 2.1437 16 6 8.4041 -5.0154 3.5069 17 6 8.5664 -6.2817 4.0330 18 6 8.5613 -7.3876 3.1920 19 7 8.7199 -8.6703 3.7213 20 6 8.4043 -7.2140 1.8229 21 6 8.2481 -5.9451 1.3019 22 6 8.0612 -5.4559 -0.1165 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8908 28 1 5.9142 -2.1229 0.8926 29 1 5.9156 -2.1222 -0.8873 30 1 5.6990 -4.5920 -0.8891 31 1 5.6976 -4.5934 0.8909 32 1 7.3470 -2.9306 1.7747 33 1 9.0160 -3.0999 1.1552 34 1 8.4037 -4.1559 4.1609 35 1 8.6925 -6.4126 5.0976 36 1 8.7207 -9.4412 3.1327 37 1 8.8295 -8.7901 4.6777 38 1 8.4041 -8.0714 1.1662 39 1 7.3480 -6.0902 -0.6425 40 1 9.0168 -5.4473 -0.6407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395409188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:14 Heat of formation + Delta-G solvation = -0.998336 kcal Electronic energy + Delta-G solvation = -18566.436095 eV Core-core repulsion = 15765.175317 eV Total energy + Delta-G solvation = -2801.260779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44711 -38.70127 -36.57007 -34.99142 -34.12408 -32.31895 -31.14787 -29.54735 -27.95161 -26.60593 -24.29034 -22.88813 -22.05138 -21.79066 -21.38418 -18.84701 -17.87773 -17.63641 -16.85433 -16.58730 -16.36510 -16.18025 -15.48020 -14.97834 -14.83784 -14.53378 -14.40296 -14.08984 -14.03469 -13.69981 -13.26269 -13.09962 -13.01971 -12.77821 -12.44978 -12.38037 -11.98792 -11.75619 -11.71123 -11.39738 -11.32362 -11.22641 -11.02964 -10.75475 -9.74790 -9.60986 -8.34400 -8.28994 -6.33127 0.45441 0.62089 1.36952 1.38808 1.51590 2.37595 2.86679 2.93597 3.00410 3.06404 3.56994 3.82552 4.04125 4.12436 4.17312 4.31213 4.42251 4.50769 4.51432 4.63558 4.68500 4.73828 4.81661 4.85406 4.95419 5.01479 5.09096 5.14812 5.18399 5.26156 5.35301 5.46077 5.56683 5.60152 5.67118 5.69583 5.90127 5.95373 6.03789 6.30124 6.59078 6.75085 7.00061 7.31711 8.88140 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032660 B = 0.003364 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.122659 B = 8320.398276 C = 8437.253034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.094 4.094 11 C -0.103 4.103 12 C 0.053 3.947 13 N -0.507 5.507 14 C 0.080 3.920 15 C -0.202 4.202 16 C -0.061 4.061 17 C -0.208 4.208 18 C 0.212 3.788 19 N -0.868 5.868 20 C -0.191 4.191 21 C -0.088 4.088 22 C 0.076 3.924 23 H 0.266 0.734 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.406 0.594 37 H 0.407 0.593 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.615 -15.589 6.314 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.049 4.049 10 C -0.132 4.132 11 C -0.141 4.141 12 C -0.075 4.075 13 N -0.228 5.228 14 C -0.048 4.048 15 C -0.206 4.206 16 C -0.080 4.080 17 C -0.231 4.231 18 C 0.106 3.894 19 N -0.408 5.408 20 C -0.214 4.214 21 C -0.090 4.090 22 C -0.052 4.052 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.236 0.764 37 H 0.237 0.763 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 23.615 -15.108 5.819 28.632 hybrid contribution -0.728 -0.199 0.880 1.159 sum 22.888 -15.307 6.699 28.338 Atomic orbital electron populations 1.70079 1.08378 1.28192 1.52859 1.26085 0.95672 1.03746 0.94073 0.85595 0.79461 0.77904 0.79320 1.18997 1.20908 1.16938 1.21571 0.92427 0.93037 1.50267 0.95277 1.19531 0.93584 0.95311 0.96434 1.21286 0.94602 0.96982 1.00358 1.21504 0.94230 0.96035 1.02304 1.22253 0.87341 0.97187 1.00727 1.65200 1.08200 1.18775 1.30624 1.21701 1.01222 0.94671 0.87207 1.21067 1.08213 0.96618 0.94671 1.20476 0.96538 0.97533 0.93439 1.20751 1.10891 0.91344 1.00068 1.17785 0.92832 0.86699 0.92047 1.42402 1.83069 1.04014 1.11284 1.20050 1.11079 0.96615 0.93659 1.21073 0.97360 0.93497 0.97089 1.21838 1.02057 0.88749 0.92532 0.92496 0.96372 0.96251 0.93252 0.93947 0.92193 0.91287 0.90179 0.95485 0.90790 0.88399 0.85061 0.84276 0.76441 0.76298 0.84900 0.89622 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.57 13.96 21.45 0.30 -61.27 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.95 45.50 27.47 68.60 1.88 47.39 16 4 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.54 -32.14 9.66 25.60 0.25 -31.89 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.09 -3.81 5.15 30.59 0.16 -3.65 16 11 C -0.10 -3.32 5.25 30.60 0.16 -3.16 16 12 C 0.05 1.49 4.63 86.31 0.40 1.89 16 13 N -0.51 -12.71 5.50 -897.09 -4.93 -17.64 16 14 C 0.08 1.91 6.41 85.50 0.55 2.46 16 15 C -0.20 -4.79 6.12 -19.63 -0.12 -4.91 16 16 C -0.06 -1.29 10.03 22.24 0.22 -1.07 16 17 C -0.21 -3.88 9.90 22.40 0.22 -3.66 16 18 C 0.21 3.79 6.75 38.22 0.26 4.05 16 19 N -0.87 -9.37 9.09 -51.37 -0.47 -9.84 16 20 C -0.19 -3.74 9.89 22.38 0.22 -3.52 16 21 C -0.09 -1.98 6.20 -19.68 -0.12 -2.10 16 22 C 0.08 1.61 6.65 85.49 0.57 2.18 16 23 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 24 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 25 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.06 1.89 6.53 -2.39 -0.02 1.88 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.15 7.97 -2.39 -0.02 2.13 16 31 H 0.03 0.81 8.00 -2.38 -0.02 0.79 16 32 H 0.07 1.87 6.17 -2.39 -0.01 1.86 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.41 3.02 8.84 -92.71 -0.82 2.20 16 37 H 0.41 2.90 8.84 -92.71 -0.82 2.08 16 38 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.09 1.68 7.69 -2.39 -0.02 1.66 16 40 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -70.56 322.91 -0.52 -71.08 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -0.66 Total: 13.60 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 3.35 Total: -43.32 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -5.10 Total: -88.75 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -70.56 -0.52 -71.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395409188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.086 kcal (2) G-P(sol) polarization free energy of solvation -70.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds