Wall clock time and date at job start Mon Mar 30 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99802 * 2 1 4 4 H 1.48501 * 109.47593 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47481 * 299.99893 * 3 2 1 6 6 H 1.48503 * 109.47442 * 59.99800 * 3 2 1 7 7 C 1.37879 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47005 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.46923 * 179.97438 * 12 11 10 14 14 C 1.47921 * 110.99770 * 71.09263 * 13 12 11 15 15 C 1.54592 * 102.60080 * 210.98776 * 14 13 12 16 16 C 1.51585 * 102.88610 * 25.54241 * 15 14 13 17 17 C 1.38136 * 131.49424 * 164.01492 * 16 15 14 18 18 C 1.38232 * 120.21688 * 180.27806 * 17 16 15 19 19 C 1.38310 * 119.94068 * 359.97438 * 18 17 16 20 20 C 1.38451 * 120.16965 * 359.87819 * 19 18 17 21 21 N 1.40011 * 119.96222 * 179.97438 * 20 19 18 22 22 C 1.38693 * 107.99788 * 344.03830 * 16 15 14 23 23 H 0.97001 * 120.00331 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47183 * 59.99308 * 9 7 2 25 25 H 1.08995 * 109.47149 * 299.99497 * 9 7 2 26 26 H 1.08999 * 109.47258 * 59.99982 * 10 9 7 27 27 H 1.08995 * 109.47325 * 300.00017 * 10 9 7 28 28 H 1.08999 * 109.47034 * 59.99917 * 11 10 9 29 29 H 1.09001 * 109.46949 * 299.99818 * 11 10 9 30 30 H 1.08999 * 109.47603 * 59.99885 * 12 11 10 31 31 H 1.09001 * 109.46808 * 299.99524 * 12 11 10 32 32 H 1.09002 * 110.78248 * 92.71700 * 14 13 12 33 33 H 1.08993 * 110.78512 * 329.26961 * 14 13 12 34 34 H 1.08998 * 110.73230 * 143.89046 * 15 14 13 35 35 H 1.09004 * 110.73450 * 267.01983 * 15 14 13 36 36 H 1.08006 * 119.89387 * 0.25063 * 17 16 15 37 37 H 1.08002 * 120.03402 * 179.97438 * 18 17 16 38 38 H 1.07998 * 119.91624 * 179.85027 * 19 18 17 39 39 H 0.96997 * 119.99755 * 335.39569 * 21 20 19 40 40 H 0.97000 * 120.00420 * 155.40366 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4748 -6.1499 0.0018 13 7 1.7403 -7.4221 0.0031 14 6 1.0874 -7.6585 -1.3030 15 6 -0.1713 -8.4652 -0.9097 16 6 -0.4136 -8.0362 0.5238 17 6 -1.5195 -8.1609 1.3420 18 6 -1.4874 -7.6718 2.6345 19 6 -0.3445 -7.0560 3.1113 20 6 0.7690 -6.9301 2.2981 21 7 1.9235 -6.3054 2.7851 22 6 0.7413 -7.4253 0.9893 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8721 -3.6042 -0.8894 28 1 0.8535 -5.0451 -0.8886 29 1 0.8541 -5.0446 0.8914 30 1 3.1015 -6.0918 0.8918 31 1 3.1014 -6.0926 -0.8882 32 1 1.7329 -8.2439 -1.9578 33 1 0.8108 -6.7151 -1.7735 34 1 -1.0168 -8.1937 -1.5418 35 1 0.0232 -9.5362 -0.9671 36 1 -2.4125 -8.6416 0.9705 37 1 -2.3540 -7.7705 3.2715 38 1 -0.3206 -6.6719 4.1204 39 1 1.8589 -5.6643 3.5101 40 1 2.7879 -6.5136 2.3974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395462763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:27 Heat of formation + Delta-G solvation = 26.721117 kcal Electronic energy + Delta-G solvation = -19526.795574 eV Core-core repulsion = 16726.736801 eV Total energy + Delta-G solvation = -2800.058773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83828 -36.93643 -35.41630 -34.02911 -32.38966 -30.85880 -28.95105 -28.59632 -27.23753 -24.46038 -22.79174 -22.18747 -21.24827 -20.29837 -20.09347 -16.74502 -16.29936 -16.24122 -15.98595 -15.73766 -14.82187 -14.66310 -14.45245 -14.10420 -13.30095 -13.04125 -12.87427 -12.75959 -12.32412 -11.97162 -11.78955 -11.56307 -11.46525 -11.33205 -11.03671 -10.94701 -10.56901 -10.48315 -10.40813 -10.03944 -9.81298 -9.59266 -9.22932 -8.97790 -8.34133 -7.91480 -7.02417 -5.98556 -4.01143 1.54822 1.74280 3.30502 3.37904 3.41966 3.76978 4.08831 4.12868 4.46208 4.67662 4.75631 5.09934 5.19855 5.24566 5.36836 5.38885 5.49814 5.52293 5.60893 5.70919 5.81331 5.88603 5.89971 6.04331 6.12843 6.26652 6.34416 6.49123 6.53886 6.74291 6.75774 6.90050 6.94877 7.07928 7.18324 7.29201 7.70174 7.76549 7.85497 7.98246 8.02271 8.44847 9.06683 9.62889 11.12714 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024843 B = 0.004624 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.791738 B = 6054.400733 C = 6327.723361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.103 4.103 11 C -0.147 4.147 12 C 0.042 3.958 13 N -0.473 5.473 14 C 0.041 3.959 15 C -0.083 4.083 16 C -0.105 4.105 17 C -0.136 4.136 18 C -0.102 4.102 19 C -0.172 4.172 20 C 0.207 3.793 21 N -0.884 5.884 22 C 0.037 3.963 23 H 0.259 0.741 24 H 0.012 0.988 25 H 0.013 0.987 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.396 0.604 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 -17.860 2.314 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.141 4.141 11 C -0.186 4.186 12 C -0.084 4.084 13 N -0.188 5.188 14 C -0.085 4.085 15 C -0.120 4.120 16 C -0.109 4.109 17 C -0.156 4.156 18 C -0.122 4.122 19 C -0.195 4.195 20 C 0.102 3.898 21 N -0.429 5.429 22 C -0.063 4.063 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.224 0.776 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.506 -18.167 2.330 18.323 hybrid contribution 0.220 1.813 -0.002 1.827 sum 0.726 -16.354 2.328 16.535 Atomic orbital electron populations 1.69982 1.06063 1.26406 1.51059 1.25037 0.94825 0.99231 0.95416 0.86568 0.80115 0.83917 0.77585 1.19765 1.21010 1.21022 1.21317 0.92998 0.91185 1.50260 0.92751 1.19067 0.93975 0.91413 0.96971 1.21516 0.98888 0.93855 0.99882 1.22268 0.98628 0.95567 1.02111 1.22534 0.96844 0.86515 1.02519 1.61118 1.22741 1.31943 1.03001 1.23247 0.94388 1.00048 0.90798 1.21267 0.97720 1.00287 0.92722 1.20283 0.93292 1.01175 0.96153 1.20133 0.97415 1.04032 0.94022 1.20702 0.97354 0.98747 0.95365 1.20486 0.93831 1.05924 0.99250 1.17150 0.88660 0.94348 0.89631 1.42675 1.06394 1.50204 1.43665 1.19172 0.91728 1.03604 0.91844 0.93101 0.96950 0.96833 0.93569 0.93730 0.92868 0.91316 0.90499 0.90698 0.89257 0.91630 0.90343 0.89881 0.86732 0.86181 0.86069 0.77555 0.77207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.10 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.15 -2.61 4.42 -26.73 -0.12 -2.72 16 12 C 0.04 0.61 4.79 -3.82 -0.02 0.59 16 13 N -0.47 -6.61 5.31 -168.81 -0.90 -7.51 16 14 C 0.04 0.51 6.69 -2.43 -0.02 0.49 16 15 C -0.08 -0.95 7.03 -26.61 -0.19 -1.13 16 16 C -0.11 -1.47 6.23 -104.06 -0.65 -2.12 16 17 C -0.14 -1.76 10.03 -39.62 -0.40 -2.15 16 18 C -0.10 -1.29 10.05 -39.56 -0.40 -1.69 16 19 C -0.17 -2.30 9.91 -39.48 -0.39 -2.69 16 20 C 0.21 2.97 5.33 -83.39 -0.44 2.52 16 21 N -0.88 -11.06 7.73 32.60 0.25 -10.81 16 22 C 0.04 0.55 4.74 -83.12 -0.39 0.16 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.98 6.58 -51.93 -0.34 0.64 16 29 H 0.07 1.31 5.55 -51.93 -0.29 1.02 16 30 H 0.08 1.04 5.33 -51.93 -0.28 0.77 16 31 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.86 6.29 -51.93 -0.33 0.54 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.40 4.48 8.91 -40.82 -0.36 4.11 16 40 H 0.40 4.71 6.31 -40.82 -0.26 4.45 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -31.85 315.35 -9.92 -41.77 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.04 Total: 5.98 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -3.70 Total: -24.34 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.09 Total: -45.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.85 -9.92 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395462763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.491 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds