Wall clock time and date at job start Mon Mar 30 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99903 * 2 1 4 4 H 1.48502 * 109.47269 * 270.00476 * 3 2 1 5 5 H 1.48493 * 109.47179 * 30.00865 * 3 2 1 6 6 H 1.48504 * 109.46854 * 150.00878 * 3 2 1 7 7 C 1.37882 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99411 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46970 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46970 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46884 * 179.97438 * 12 11 10 14 14 C 1.46557 * 111.00264 * 48.96719 * 13 12 11 15 15 C 1.53491 * 109.11788 * 178.95035 * 14 13 12 16 16 N 1.47275 * 107.23362 * 298.28468 * 15 14 13 17 17 C 1.40470 * 117.63684 * 41.16581 * 16 15 14 18 18 C 1.38647 * 119.47336 * 168.41866 * 17 16 15 19 19 C 1.38265 * 120.00767 * 179.66044 * 18 17 16 20 20 C 1.38253 * 119.97568 * 0.02562 * 19 18 17 21 21 C 1.38123 * 120.30178 * 0.13181 * 20 19 18 22 22 C 1.39084 * 120.21416 * 359.96882 * 21 20 19 23 23 H 0.96999 * 120.00047 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47118 * 60.00147 * 9 7 2 25 25 H 1.08997 * 109.46929 * 299.99912 * 9 7 2 26 26 H 1.09000 * 109.47197 * 60.00010 * 10 9 7 27 27 H 1.09003 * 109.47037 * 300.00127 * 10 9 7 28 28 H 1.09000 * 109.47173 * 59.99970 * 11 10 9 29 29 H 1.09003 * 109.47323 * 299.99926 * 11 10 9 30 30 H 1.09000 * 109.47197 * 59.99985 * 12 11 10 31 31 H 1.08997 * 109.47038 * 299.99634 * 12 11 10 32 32 H 1.08998 * 109.53182 * 59.05554 * 14 13 12 33 33 H 1.09007 * 109.52687 * 298.84223 * 14 13 12 34 34 H 1.08997 * 109.90642 * 178.84599 * 15 14 13 35 35 H 1.09004 * 109.90440 * 57.70946 * 15 14 13 36 36 H 0.96997 * 121.18224 * 221.19308 * 16 15 14 37 37 H 1.08005 * 119.99371 * 359.68138 * 18 17 16 38 38 H 1.08003 * 120.00898 * 180.27380 * 19 18 17 39 39 H 1.08004 * 119.84755 * 180.10767 * 20 19 18 40 40 H 1.07997 * 119.88859 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6525 0.7002 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0018 13 7 1.7398 -7.4222 -0.0018 14 6 0.6989 -7.4277 -1.0335 15 6 -0.0221 -8.7826 -1.0130 16 7 0.9802 -9.8150 -1.3270 17 6 2.2516 -9.6877 -0.7435 18 6 3.1426 -10.7478 -0.8115 19 6 4.3995 -10.6320 -0.2471 20 6 4.7671 -9.4591 0.3856 21 6 3.8830 -8.4005 0.4597 22 6 2.6154 -8.5066 -0.1027 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8914 29 1 0.8532 -5.0451 0.8886 30 1 3.1011 -6.0928 0.8882 31 1 3.1009 -6.0919 -0.8918 32 1 1.1543 -7.2721 -2.0115 33 1 -0.0172 -6.6307 -0.8328 34 1 -0.8134 -8.7933 -1.7625 35 1 -0.4438 -8.9636 -0.0242 36 1 0.7700 -10.5563 -1.9162 37 1 2.8550 -11.6640 -1.3058 38 1 5.0952 -11.4562 -0.3039 39 1 5.7501 -9.3702 0.8243 40 1 4.1770 -7.4874 0.9559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395517638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:25 Heat of formation + Delta-G solvation = 23.559534 kcal Electronic energy + Delta-G solvation = -18870.434609 eV Core-core repulsion = 16070.238740 eV Total energy + Delta-G solvation = -2800.195869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55341 -37.14106 -35.77887 -34.16740 -32.21593 -30.59287 -29.97452 -28.74877 -26.39416 -24.44034 -23.85524 -22.53621 -20.93421 -20.09701 -19.71247 -17.65274 -16.75574 -16.28057 -16.13932 -15.13993 -15.03249 -14.49708 -14.39467 -14.08718 -13.70060 -13.68411 -13.22166 -12.79248 -12.47349 -12.13487 -11.80149 -11.74792 -11.56983 -11.35199 -11.04030 -10.89232 -10.63729 -10.49863 -10.32834 -10.10507 -9.72059 -9.62223 -9.28424 -9.03118 -8.33514 -8.13665 -7.09252 -5.98698 -4.00839 1.43851 1.60582 3.30464 3.32600 3.38775 3.42383 3.65726 4.03055 4.47112 4.69147 4.77710 5.02417 5.10020 5.12979 5.33190 5.34253 5.37344 5.39490 5.43783 5.53399 5.66423 5.77977 5.80138 5.94119 6.07557 6.10641 6.23621 6.28816 6.45090 6.63469 6.74563 6.76874 6.90695 7.01585 7.05983 7.17709 7.41872 7.69415 7.69706 7.84501 8.01901 8.44885 9.06518 9.63154 11.12679 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035816 B = 0.003492 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.578420 B = 8017.317606 C = 8676.656955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.060 3.940 13 N -0.490 5.490 14 C 0.034 3.966 15 C 0.123 3.877 16 N -0.760 5.760 17 C 0.171 3.829 18 C -0.169 4.169 19 C -0.113 4.113 20 C -0.144 4.144 21 C -0.124 4.124 22 C 0.063 3.937 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -21.748 -2.370 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.159 4.159 12 C -0.066 4.066 13 N -0.204 5.204 14 C -0.093 4.093 15 C -0.002 4.002 16 N -0.394 5.394 17 C 0.068 3.932 18 C -0.192 4.192 19 C -0.133 4.133 20 C -0.165 4.165 21 C -0.145 4.145 22 C -0.039 4.039 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.051 -21.443 -1.886 21.740 hybrid contribution 0.634 0.722 -0.853 1.285 sum 3.685 -20.720 -2.739 21.223 Atomic orbital electron populations 1.69964 1.06056 1.26546 1.51015 1.25031 0.94848 0.99251 0.95389 0.86606 0.79882 0.83517 0.78074 1.20702 1.21231 1.19861 1.21284 0.93044 0.91177 1.50368 0.92734 1.19084 0.93987 0.91321 0.97135 1.21595 0.99138 0.93664 1.00296 1.21833 0.97991 0.93924 1.02166 1.22413 0.96282 0.86421 1.01439 1.58388 1.13721 1.02424 1.45852 1.22501 0.95129 0.98612 0.93047 1.21736 0.90624 0.86596 1.01278 1.44751 1.09965 1.30039 1.54684 1.17537 0.86658 0.93298 0.95730 1.20445 0.94957 0.97383 1.06408 1.20752 0.95690 0.97734 0.99113 1.20750 0.99580 0.93702 1.02421 1.20946 0.92004 0.99972 1.01603 1.18491 0.92449 0.91153 1.01773 0.93042 0.96759 0.96585 0.93245 0.93529 0.92237 0.91439 0.90034 0.93947 0.93428 0.88004 0.89687 0.91502 0.76412 0.86495 0.86511 0.86445 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.35 16 11 C -0.12 -2.03 4.59 -26.73 -0.12 -2.15 16 12 C 0.06 0.87 4.29 -3.82 -0.02 0.86 16 13 N -0.49 -6.90 4.68 -170.91 -0.80 -7.70 16 14 C 0.03 0.43 4.87 -3.76 -0.02 0.41 16 15 C 0.12 1.23 7.35 -3.36 -0.02 1.21 16 16 N -0.76 -7.89 5.93 -57.61 -0.34 -8.23 16 17 C 0.17 2.14 6.48 -83.38 -0.54 1.60 16 18 C -0.17 -1.87 9.90 -39.42 -0.39 -2.26 16 19 C -0.11 -1.21 10.05 -39.57 -0.40 -1.61 16 20 C -0.14 -1.65 10.03 -39.62 -0.40 -2.05 16 21 C -0.12 -1.61 9.06 -39.31 -0.36 -1.97 16 22 C 0.06 0.88 5.88 -83.58 -0.49 0.39 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.16 6.47 -51.93 -0.34 0.83 16 31 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.24 6.27 -51.93 -0.33 0.91 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 3.18 8.89 -40.82 -0.36 2.82 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.13 1.57 6.05 -52.49 -0.32 1.26 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -31.45 319.44 -10.34 -41.79 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.28 Total: 0.12 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -3.44 Total: -21.18 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.41 Total: -42.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.45 -10.34 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395517638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.348 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds